submitMgrastJob: Create a job on MGRAST

In mmnet: A metagenomic pipeline for systems biology

Description

Submit your file to create a job after data uploaded.

Usage

submitMgrastJob(login.info,seqfile,new_project)

Arguments

login.info	a list of login info generated after user login into MGRAST which consists of webkey of the file, the invlid time of your webkey, cookie, websession and curlhandle. It is unique for each users
seqfile	character, the sequence name you want to analysis
new_project	character, the project name

Details

Users have to specify a project to upload a job to MG-RAST, just new project supported in this current version of our package. When the submission process has been successfully completed, MG-RAST ID's ("Accession numbers") will be automatically assigned and the data will be removed from your inbox.

Value

return the MGRAST ID of your sequence and the user name

See Also

listMgrastInbox, uploadMgrast

Examples

## login into MGRAST for webkey
# login.info <- loginMgrast("yiluheihei","heihei")

##
#submitMgrastJob(login.info,seq,new_project)

mmnet documentation built on May 31, 2017, 3:25 p.m.