CNAnorm: A normalization method for Copy Number Aberration in cancer samples

Performs ratio, GC content correction and normalization of data obtained using low coverage (one read every 100-10,000 bp) high troughput sequencing. It performs a "discrete" normalization looking for the ploidy of the genome. It will also provide tumour content if at least two ploidy states can be found.

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Package details

AuthorStefano Berri <[email protected]>, Henry M. Wood <[email protected]>, Arief Gusnanto <[email protected]>
Bioconductor views CopyNumberVariation Coverage DNASeq GenomicVariation Normalization Sequencing WholeGenome
MaintainerStefano Berri <[email protected]>
Package repositoryView on Bioconductor
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CNAnorm documentation built on Nov. 1, 2018, 2:07 a.m.