Performs ratio, GC content correction and normalization of data obtained using low coverage (one read every 100-10,000 bp) high troughput sequencing. It performs a "discrete" normalization looking for the ploidy of the genome. It will also provide tumour content if at least two ploidy states can be found.
|Author||Stefano Berri <[email protected]>, Henry M. Wood <[email protected]>, Arief Gusnanto <[email protected]>|
|Bioconductor views||CopyNumberVariation Coverage DNASeq GenomicVariation Normalization Sequencing WholeGenome|
|Maintainer||Stefano Berri <[email protected]>|
|Package repository||View on Bioconductor|
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