CNAnorm: A normalization method for Copy Number Aberration in cancer samples
Version 1.22.1

Performs ratio, GC content correction and normalization of data obtained using low coverage (one read every 100-10,000 bp) high troughput sequencing. It performs a "discrete" normalization looking for the ploidy of the genome. It will also provide tumour content if at least two ploidy states can be found.

Getting started

Package details

AuthorStefano Berri <sberri@illumina.com>, Henry M. Wood <H.M.Wood@leeds.ac.uk>, Arief Gusnanto <a.gusnanto@leeds.ac.uk>
Bioconductor views CopyNumberVariation Coverage DNASeq GenomicVariation Normalization Sequencing WholeGenome
MaintainerStefano Berri <sberri@illumina.com>
LicenseGPL-2
Version1.22.1
URL http://www.r-project.org
Package repositoryView on Bioconductor
Installation Install the latest version of this package by entering the following in R:
source("https://bioconductor.org/biocLite.R")
biocLite("CNAnorm")

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CNAnorm documentation built on May 31, 2017, 11:41 a.m.