LS041: Mapped reads in tumor and matched blood for patient LS041

In CNAnorm: A normalization method for Copy Number Aberration in cancer samples

Description

This data set provide reads in tumor and matched blood for patient LS041. Each row has information about non-overlapping window across the genome. In particular it reports: chromosome name, starting position of the window (1 based), number of mapped reads in the test (lung tumor), number of reads in the control (matched blood) and GC content of the window.

Usage

data(LS041)

Format

A dataframe

References

Gusnanto, A., Wood, H.M., Pawitan, Y., Rabbitts, P. and Berri, S. (2011) Correcting for cancer genome size and tumour cell content enables better estimation of copy number alterations from next generation sequence data. Bioinformatics

CNAnorm documentation built on Nov. 8, 2020, 5:29 p.m.