validation-methods: Methods for Function addSmooth in Package 'CNAnorm'

In CNAnorm: A normalization method for Copy Number Aberration in cancer samples

Description

validation segment and smooth perform ratio values in Package ‘CNAnorm’

Usage

## S4 method for signature 'CNAnorm'
validation(object, peaks = sugg.peaks(object), 
    ploidy = sugg.ploidy(object))

Arguments

object	An object of Class "CNAnorm"
peaks	The user validated location (ratio Test/Normal) of the peaks before normalization.
ploidy	The user validated ploidy of the peaks before normalization.

Value

An object of class "CNAnorm"

Note

It is implicitly called by discreteNorm if no validation was manually performed

Author(s)

Stefano Berri [e-mail]

See Also

ratio.s, CNAnorm-class

Examples

data(CN)
# see peakPloidy documentation to know how object CN is created
CN <- validation(CN)

CNAnorm documentation built on Nov. 8, 2020, 5:29 p.m.