suggValid-methods: Methods for Function to retrieve suggested/validated ploidy...

In CNAnorm: A normalization method for Copy Number Aberration in cancer samples

Description

sugg.peaks returns the location of peaks before normalization as suggested by peakPloidy.

sugg.ploidy returns the ploidy of the peaks as suggested by peakPloidy.

valid.peaks returns the location of peaks before normalization as validated after calling method "validation"

valid.ploidy returns the validated ploidy of the peaks as validated after calling method "validation"

Usage

sugg.peaks(object)
sugg.ploidy(object)
valid.peaks(object)
valid.ploidy(object)

Arguments

object

An object of Class "CNAnorm" after method "peakPloidy" was called

Value

A numeric vector

Author(s)

Stefano Berri <[e-mail]>

See Also

gcNorm, CNAnorm-class, DNAcopy

Examples

data(CN)
# see peakPloidy documentation to know how object CN is created
plot(sugg.ploidy(CN), sugg.peaks(CN))

CNAnorm documentation built on Nov. 8, 2020, 5:29 p.m.