plotPeaks-methods: Methods for Function plotPeaks in Package 'CNAnorm'

In CNAnorm: A normalization method for Copy Number Aberration in cancer samples

Description

plotPeaks plot annotated distribution of ratio Test/Normal

Usage

## S4 method for signature 'CNAnorm'
plotPeaks(object, special1 = character(0), special2 = character(0),
    show ='suggested', ...)

Arguments

object	An object of Class "CNAnorm"
special1	The chromosome/contig whose distribution will be shown with a different color
special2	The chromosome/contig whose distribution will be shown with a different color
show	A character verctor with one or both of the following: "suggested", "validated". Specify what need to be plotted
...	Further arguments to pass to the function plot

Author(s)

Stefano Berri [e-mail]

See Also

plot, validation, peakPloidy

Examples

data(CN)
# see peakPloidy documentation to know how object CN is created
plotPeaks(CN, special1 = 'chrX', special2 = 'chrY')

CNAnorm documentation built on Nov. 8, 2020, 5:29 p.m.