ssizeRNA: Sample Size Calculation for RNA-Seq Experimental Design
Version 1.2.9

We propose a procedure for sample size calculation while controlling false discovery rate for RNA-seq experimental design. Our procedure depends on the Voom method proposed for RNA-seq data analysis by Law et al. (2014) and the sample size calculation method proposed for microarray experiments by Liu and Hwang (2007) . We develop a set of functions that calculates appropriate sample sizes for two-sample t-test for RNA-seq experiments with fixed or varied set of parameters. The outputs also contain a plot of power versus sample size, a table of power at different sample sizes, and a table of critical test values at different sample sizes. To install this package, please use 'source("http://bioconductor.org/biocLite.R"); biocLite("ssizeRNA")'.

Package details

AuthorRan Bi [aut, cre], Peng Liu [aut], Tim Triche [ctb]
Bioconductor views DNASeq DifferentialExpression ExperimentalDesign GeneExpression Microarray RNASeq Sequencing
Date of publication2017-01-09 10:00:34
MaintainerRan Bi <[email protected]>
LicenseGPL (>= 2)
Version1.2.9
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("ssizeRNA")

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ssizeRNA documentation built on May 29, 2017, 5:45 p.m.