ngscopy_cmdline_example: Run an example of NGScopy at UNIX-like command line

In NGScopy: NGScopy: Detection of Copy Number Variations in Next Generation Sequencing sequencing

Description

Run an example of NGScopy at UNIX-like command line

Usage

ngscopy_cmdline_example(ifRun = FALSE, pcThreads = 1)

Arguments

ifRun	logical, whether to run
pcThreads	numeric, the number of processors performing the parallel computing.

Value

character, the command line.

Author(s)

Xiaobei Zhao

Examples

## To run at R prompt
ngscopy_cmdline_example()
## Not run: 
ngscopy_cmdline_example(ifRun=TRUE) # Note: this would take a while. And
                                    # R will create a folder for output
                                    # at current working directory

## End(Not run)

## ## To run at Unix-like command line (not at R prompt)
## Rscript -e "require(methods);NGScopy::ngscopy_cmdline_example(TRUE)"

NGScopy documentation built on May 6, 2019, 2:43 a.m.