federicomarini/quantiseqr: Quantification of the Tumor Immune contexture from RNA-seq data
This package provides a streamlined workflow for the quanTIseq method, developed to perform the quantification of the Tumor Immune contexture from RNA-seq data. The quantification is performed against the TIL10 signature (dissecting the contributions of ten immune cell types), carefully crafted from a collection of human RNA-seq samples. The TIL10 signature has been extensively validated using simulated, flow cytometry, and immunohistochemistry data.
Getting started
Browse package contents
Package details |
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| Bioconductor views | Annotation Classification ExperimentHubSoftware FeatureExtraction FlowCytometry GeneExpression ImmunoOncology Microarray Sequencing Software StatisticalMethod Transcription Transcriptomics Visualization |
| Maintainer | |
| License | GPL-3 |
| Version | 1.13.0 |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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