check_signature: Check the signature matrix

In federicomarini/quantiseqr: Quantification of the Tumor Immune contexture from RNA-seq data

Check the signature matrix

Description

Checks requirements for the signature matrix, with respect to the expression matrix data provided (the one on which the deconvolution algorithm needs to be run)

Usage

check_signature(signature_matrix, mix_mat)

Arguments

signature_matrix	A data.frame or a matrix object, containing the signature matrix
mix_mat	Mixture matrix, storing the information provided as expression_data to the main function, run_quantiseqr()

Details

Performs a number of checks to ensure the compatibility of the provided signature matrix in quantiseqr, referring also to the content of the mix_mat mixture matrix, to be deconvoluted

Value

Invisible NULL

federicomarini/quantiseqr documentation built on May 7, 2024, 9:50 a.m.