get_peak_list: Get a list of peak regions for a given histone mark
In jokergoo/epik: Integrative Analysis and Visualization of Epigenomic Sequencing Data

Get a list of peak regions for a given histone mark

1	get_peak_list(mark, sample_id = chipseq_hooks$sample_id(mark), ...)

`mark`	name of the histone mark
`sample_id`	a vector of sample IDs. If not defined, it is the total samples that are available for this histone mark.
`...`	more arguments pass to `chipseq_hooks`$peak().

It works after chipseq_hooks is set.

A list of GRanges objects.

If you e.g. set "chr" as the third argument when defining chipseq_hooks$peak(), "chr" can also be passed here through ....

Zuguang Gu <z.gu@dkfz.de>

1 2	# There is no example NULL

jokergoo/epik documentation built on Sept. 28, 2019, 9:20 a.m.

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