heatmap_subgroup_specificity: Heatmap for visualizing subgroup specific genomic regions
In jokergoo/epik: Integrative Analysis and Visualization of Epigenomic Sequencing Data

Heatmap for visualizing subgroup specific genomic regions

1 2	heatmap_subgroup_specificity(gr_list, genomic_features = NULL, ha = HeatmapAnnotation(subgroup = attr(gr_list, "subgroup")), ...)

`gr_list`	a list of `GRanges` objects which is generated by `subgroup_specific_genomic_regions`
`genomic_features`	Genomic features that are used for annotating regions in `gr_list`, it should be a list or a single `GRanges` objects
`ha`	the default column annotation is the subgroups used in `subgroup_specific_genomic_regions` step. The value should be a `HeatmapAnnotation-class` object.
`...`	pass to `draw,HeatmapList-method`

Columns are clustered within each subgroup and rows are clustered for each type of specificity.

A HeatmapList-class object

Zuguang Gu <z.gu@dkfz.de>

1 2	# There is no example NULL

jokergoo/epik documentation built on Sept. 28, 2019, 9:20 a.m.

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