parseMetaCycPathway: parseMetaCycPathway

View source: R/utils.R

parseMetaCycPathwayR Documentation

parseMetaCycPathway

Description

Parse MetaCyc "pathways.dat"

Usage

parseMetaCycPathway(
  file,
  candSp,
  withTax = FALSE,
  noComma = FALSE,
  clear = FALSE
)

Arguments

file

path to pathways.dat

candSp

species to grepl

withTax

parse taxonomy information

noComma

no comma separated when taxonomy parsing

clear

delete HTML tags and some symbols

Details

Parse the MetaCyc pathway information for the use in the package.

Value

data.frame of MetaCyc pathway information

Examples

file <- "pathways.dat"
## Not run: parseMetaCycPathway(file, candSp="all")

noriakis/wcGeneSummary documentation built on May 31, 2024, 4:42 p.m.