parseMetaCycPathway: parseMetaCycPathway

In noriakis/wcGeneSummary: visualization and interpretation of textual information from omics summary data through network analysis

parseMetaCycPathway

Description

Parse MetaCyc "pathways.dat"

Usage

parseMetaCycPathway(
  file,
  candSp,
  withTax = FALSE,
  noComma = FALSE,
  clear = FALSE
)

Arguments

file	path to pathways.dat
candSp	species to grepl
withTax	parse taxonomy information
noComma	no comma separated when taxonomy parsing
clear	delete HTML tags and some symbols

Details

Parse the MetaCyc pathway information for the use in the package.

Value

data.frame of MetaCyc pathway information

Examples

file <- "pathways.dat"
## Not run: parseMetaCycPathway(file, candSp="all")

noriakis/wcGeneSummary documentation built on May 31, 2024, 4:42 p.m.