parseMetaCycPathway: parseMetaCycPathway
In noriakis/wcGeneSummary: visualization and interpretation of textual information from omics summary data through network analysis
parseMetaCycPathway R Documentation
parseMetaCycPathway
Description
Parse MetaCyc "pathways.dat"
Usage
parseMetaCycPathway(
file,
candSp,
withTax = FALSE,
noComma = FALSE,
clear = FALSE
)
Arguments
file
path to pathways.dat
candSp
species to grepl
withTax
parse taxonomy information
noComma
no comma separated when taxonomy parsing
clear
delete HTML tags and some symbols
Details
Parse the MetaCyc pathway information for the use in the package.
Value
data.frame of MetaCyc pathway information
Examples
file <- "pathways.dat"
## Not run: parseMetaCycPathway(file, candSp="all")
noriakis/wcGeneSummary documentation built on April 22, 2024, 7:12 a.m.
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| parseMetaCycPathway | R Documentation |
parseMetaCycPathway
Description
Parse MetaCyc "pathways.dat"
Usage
parseMetaCycPathway(
file,
candSp,
withTax = FALSE,
noComma = FALSE,
clear = FALSE
)
Arguments
file |
path to pathways.dat |
candSp |
species to grepl |
withTax |
parse taxonomy information |
noComma |
no comma separated when taxonomy parsing |
clear |
delete HTML tags and some symbols |
Details
Parse the MetaCyc pathway information for the use in the package.
Value
data.frame of MetaCyc pathway information
Examples
file <- "pathways.dat"
## Not run: parseMetaCycPathway(file, candSp="all")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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