exportCyjsWithoutImage: exportCyjsWithoutImage

In noriakis/wcGeneSummary: visualization and interpretation of textual information from omics summary data through network analysis

exportCyjsWithoutImage

Description

Export Cytoscape.js from the network without images

Usage

exportCyjsWithoutImage(
  g,
  rootDir,
  netDir,
  edgeWidth = "weight",
  nodeColor = "tag",
  nodeSize = "Freq",
  nodeColorDiscretePal = "RdBu",
  sizeMin = 10,
  sizeMax = 50
)

Arguments

g	igraph object
rootDir	root directory path
netDir	directory to store scripts
edgeWidth	attribute name for edgeWidth
nodeColor	attribute name for node color
nodeSize	attribute name for node size
nodeColorDiscretePal	color mapping palette for discrete variables
sizeMin	minimum size for scaling node size
sizeMax	maximum size for scaling node size

Details

Export Cytoscape.js script, HTML and stylesheet for the graph without image

Value

return nothing, export to a specified directory

Examples

library(igraph)
g <- graph_from_literal( ME1-+ME2 )
V(g)$size <- c(1,1)
## Not run: exportCyjsWithoutImage(g, "./", "net")

noriakis/wcGeneSummary documentation built on May 31, 2024, 4:42 p.m.