API for noriakis/wcGeneSummary
visualization and interpretation of textual information from omics summary data through network analysis
| Global functions | |
|---|---|
| DimPlotWithTexts | Man page Source code |
| TextMarkers | Man page Source code |
| TextMarkersScran | Man page Source code |
| alliance | Man page |
| appendEdges | Source code |
| appendNodesAndTexts | Source code |
| assign_community | Source code |
| biotextgraph | Man page Source code |
| bugsigdb | Man page |
| changeLayout | Man page Source code |
| compareWordNet | Man page Source code |
| connectGenes | Man page Source code |
| convertMetaCyc | Man page |
| enzyme | Man page Source code |
| exportCyjs | Man page Source code |
| exportCyjsWithoutImage | Man page Source code |
| exportVisjs | Man page Source code |
| exportWCNetwork | Man page Source code |
| findTerm | Man page |
| generalf | Man page |
| geom_node_shadowtext | Man page Source code |
| geom_sc_wordcloud | Man page Source code |
| getPubMed | Source code |
| getSlot | Man page |
| getSlot,biotext-method | Man page |
| getUPtax | Man page Source code |
| getWordsOnDendro | Man page Source code |
| ggplot_add.geom_sc_wordcloud | Man page Source code |
| graph_cluster | Man page Source code |
| makeBar | Man page Source code |
| makeCorpus | Man page |
| make_TDM | Man page Source code |
| make_corpus | Man page Source code |
| make_graph | Man page Source code |
| manual | Man page Source code |
| obtainMarkersWC | Man page Source code |
| obtainMarkersWCScran | Man page Source code |
| obtainMatrix | Source code |
| obtainTextPosition | Man page Source code |
| obtain_alliance | Man page Source code |
| obtain_bugsigdb | Man page Source code |
| obtain_enrich | Man page Source code |
| obtain_enzyme | Man page Source code |
| obtain_manual | Man page Source code |
| obtain_pubmed | Man page Source code |
| obtain_refseq | Man page Source code |
| parseMetaCycPathway | Man page Source code |
| perform_ora | Man page Source code |
| plotDynamic | Man page Source code |
| plotEigengeneNetworksWithWords | Man page |
| plotNet | Man page |
| plotNet,biotext-method | Man page |
| plotORA | Man page Source code |
| plotReducedDimWithTexts | Man page Source code |
| plotWC | Man page |
| plotWC,biotext-method | Man page |
| plot_biofabric | Man page Source code |
| plot_biotextgraph | Man page Source code |
| plot_wordcloud | Man page Source code |
| preserveDict | Source code |
| process_network_gene | Man page Source code |
| process_network_manual | Man page Source code |
| process_network_microbe | Man page Source code |
| pubmed | Man page Source code |
| refseq | Man page |
| refseqDESeq2 | Man page Source code |
| refseqWGCNA | Man page Source code |
| retFiltWords | Source code |
| retUdpipeNet | Source code |
| returnExample | Man page Source code |
| returnP | Man page Source code |
| returnPyramid | Man page Source code |
| returnQuanteda | Man page Source code |
| returnSim | Man page |
| return_gene_path_graph | Source code |
| set_filter_words | Man page Source code |
| split_by_ea | Source code |
| tag_words | Man page Source code |
| textORA | Man page Source code |
