obtain_alliance: obtain_alliance

View source: R/steps.R

obtain_allianceR Documentation

obtain_alliance

Description

Obtain biotext class object from The Alliance of Genome Resources

Usage

obtain_alliance(
  geneList,
  file = "GENE-DESCRIPTION-TSV_HUMAN.tsv",
  keyType = "SYMBOL",
  org_db = org.Hs.eg.db
)

Arguments

geneList

gene ID list

file

filename, default to "GENE-DESCRIPTION-TSV_HUMAN.tsv"

keyType

key type of gene list

org_db

used to convert ID

Details

Obtain gene description from The Alliance of Genome Resources (https://www.alliancegenome.org/downloads)

Value

biotext class object

Examples

## Not run: obtain_alliance(c("PNKP"))

noriakis/wcGeneSummary documentation built on May 31, 2024, 4:42 p.m.