obtain_bugsigdb: obtain_bugsigdb

In noriakis/wcGeneSummary: visualization and interpretation of textual information from omics summary data through network analysis

obtain_bugsigdb

Description

Obtain microbe-related information from bugsigdb

Usage

obtain_bugsigdb(mb_list, target = "title", curate = TRUE, api_key = NULL)

Arguments

mb_list	microbe list
target	title or abstract
curate	curated articles (TRUE) or search for PubMed (FALSE) if FALSE, same for fetching from PubMed by specified query
api_key	API key for PubMed

Details

Obtain microbe description from BugSigDB using bugsigdbr.

Value

biotext class object

See Also

generalf

Examples

## Not run: 
    obtain_bugsigdb("Veillonella dispar")

## End(Not run)

noriakis/wcGeneSummary documentation built on May 31, 2024, 4:42 p.m.