make_TDM: make_TDM

In noriakis/wcGeneSummary: visualization and interpretation of textual information from omics summary data through network analysis

make_TDM

Description

Make text document matrix (TDM) from biotext object.

Usage

make_TDM(
  ret,
  tfidf = FALSE,
  normalize = FALSE,
  takeMean = FALSE,
  takeMax = FALSE,
  docsum = FALSE
)

Arguments

ret	biotext class
tfidf	use TF-IDF
normalize	normalize the values to document number
takeMean	take the mean value for words to rank
takeMax	take the max value for words to rank
docsum	count words per doc

Details

Make TDM based on biotext class using tm.

Value

biotext class object

Examples

obtain_refseq("PNKP") |> make_corpus() |> make_TDM()

noriakis/wcGeneSummary documentation built on April 22, 2024, 7:12 a.m.