getUPtax: getUPtax
In noriakis/wcGeneSummary: visualization and interpretation of textual information from omics summary data through network analysis
getUPtax R Documentation
getUPtax
Description
Get UniProt taxonomy information.
Usage
getUPtax(file, candUP, candTax = NULL)
Arguments
file
downloaded file
candUP
candidate UniProt organism identification codes
candTax
candidate taxonomy name
Details
Obtain the list of UniProt organism identification codes, by querying taxonomy or UniProt codes.
https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/complete/docs/speclist.txt
The file above must be downloaded and specified to file argument.
Value
data.frame consisting of taxonomy name and UniProt IDs
Examples
file <- "speclist.txt"
## Not run: getUPtax(file, candUP="all")
noriakis/wcGeneSummary documentation built on April 22, 2024, 7:12 a.m.
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| getUPtax | R Documentation |
getUPtax
Description
Get UniProt taxonomy information.
Usage
getUPtax(file, candUP, candTax = NULL)
Arguments
file |
downloaded file |
candUP |
candidate UniProt organism identification codes |
candTax |
candidate taxonomy name |
Details
Obtain the list of UniProt organism identification codes, by querying taxonomy or UniProt codes. https://ftp.uniprot.org/pub/databases/uniprot/current_release/knowledgebase/complete/docs/speclist.txt The file above must be downloaded and specified to file argument.
Value
data.frame consisting of taxonomy name and UniProt IDs
Examples
file <- "speclist.txt"
## Not run: getUPtax(file, candUP="all")
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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