makeBar: makeBar

In noriakis/wcGeneSummary: visualization and interpretation of textual information from omics summary data through network analysis

makeBar

Description

Make a barplot of word frequency from queried identifiers

Usage

makeBar(
  queries,
  top = 10,
  keyType = "SYMBOL",
  pal = NULL,
  textSize = 20,
  reord = TRUE,
  orgDb = org.Hs.eg.db,
  flip = FALSE,
  grad = FALSE,
  retList = FALSE,
  argList = list()
)

Arguments

queries	gene IDs
top	how many numbers of words to be shown
keyType	default to SYMBOL
pal	palette used in barplot
textSize	text size in barplot
reord	order by frequency or not
orgDb	orgDb
flip	flip the barplot (gene name in y-axis)
grad	use gradient of frequency
retList	return result of refseq
argList	passed to refseq()

Details

The function accepts the biological entities, returns the bar plots of their frequencies in the database.

Value

barplot of word frequency

Examples

geneList <- c("DDX41")
makeBar(geneList)

noriakis/wcGeneSummary documentation built on May 31, 2024, 4:42 p.m.