plotDynamic: plotDynamic

In noriakis/wcGeneSummary: visualization and interpretation of textual information from omics summary data through network analysis

plotDynamic

Description

List network of words using graphlayouts::layout_as_dynamic

Usage

plotDynamic(
  listOfNets,
  concat = "union",
  alpha = 0.5,
  titles = NULL,
  tag = FALSE,
  useDynamic = TRUE
)

Arguments

listOfNets	list consisting results of wc* functions (plotType="network")
concat	"union" or "intersection"
alpha	pass to layout_as_dynamic
titles	title to be shown on plot
tag	show tag on plot
useDynamic	use layout_as_dynamic

Details

The function accepts the list of biotext object storing inferred networks. The networks are aligned by the specific layout and plotted.

Value

plot comparing gene clusters

Examples

library(igraph)
wc1 <- refseq(c("DDX41","IRF3","XRCC1","ERCC1","ERCC2","ERCC3"), plotType="network")
wc2 <- refseq(c("DDX41","PNKP","XRCC1","COPA","CD4","NLRP3"), plotType="network")
compare <- plotDynamic(list(wc1, wc2))

noriakis/wcGeneSummary documentation built on April 22, 2024, 7:12 a.m.