obtain_enrich: obtain_enrich

In noriakis/wcGeneSummary: visualization and interpretation of textual information from omics summary data through network analysis

obtain_enrich

Description

Obtain enrichment analysis description

Usage

obtain_enrich(
  geneList,
  keyType = "SYMBOL",
  enrich = "kegg",
  org_db = org.Hs.eg.db,
  top_path = 30
)

Arguments

geneList	gene list
keyType	key type of gene list
enrich	'kegg' or 'reactome'
org_db	used to convert ID
top_path	the number of pathways to be obtained sorted by p-values

Details

The function performs enrichment analysis on queried vector, and returns the biotext object using the textual information from biological pathways.

Value

biotext class object

Examples

if (requireNamespace("clusterProfiler")) {
    testgenes <- c("IRF3","PNKP","DDX41","ERCC1","ERCC2","XRCC1")
    obtain_enrich(testgenes)
}

noriakis/wcGeneSummary documentation built on May 31, 2024, 4:42 p.m.