Files in noriakis/wcGeneSummary
visualization and interpretation of textual information from omics summary data through network analysis
.Rbuildignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/alliance.R
R/biotextgraph.R
R/bugsigdb.R
R/compareWordNet.R
R/enzyme.R
R/exportWCNetwork.R
R/external.R
R/geom_sc_wordcloud.R
R/getWordsOnDendro.R
R/manual.R
R/pathviewText.R
R/pubmed.R
R/refseq.R
R/sc.R
R/steps.R
R/textORA.R
R/useUdpipe.R
R/utils.R
README.md
_pkgdown.yml
inst/extdata/sysdata.rda
man/DimPlotWithTexts.Rd
man/TextMarkers.Rd
man/TextMarkersScran.Rd
man/biotextgraph.Rd
man/changeLayout.Rd
man/compareWordNet.Rd
man/connectGenes.Rd
man/convertMetaCyc.Rd
man/enzyme.Rd
man/exportCyjs.Rd
man/exportCyjsWithoutImage.Rd
man/exportVisjs.Rd
man/exportWCNetwork.Rd
man/findTerm.Rd
man/generalf.Rd
man/geom_node_shadowtext.Rd
man/geom_sc_wordcloud.Rd
man/getSlot-biotext-method.Rd
man/getSlot.Rd
man/getUPtax.Rd
man/getWordsOnDendro.Rd
man/ggplot_add.geom_sc_wordcloud.Rd
man/graph_cluster.Rd
man/makeBar.Rd
man/makeCorpus.Rd
man/make_TDM.Rd
man/make_corpus.Rd
man/make_graph.Rd
man/obtainMarkersWC.Rd
man/obtainMarkersWCScran.Rd
man/obtainTextPosition.Rd
man/obtain_alliance.Rd
man/obtain_bugsigdb.Rd
man/obtain_enrich.Rd
man/obtain_enzyme.Rd
man/obtain_manual.Rd
man/obtain_pubmed.Rd
man/obtain_refseq.Rd
man/parseMetaCycPathway.Rd
man/perform_ora.Rd
man/plotDynamic.Rd
man/plotEigengeneNetworksWithWords.Rd
man/plotORA.Rd
man/plotReducedDimWithTexts.Rd
man/plot_biofabric.Rd
man/plot_biotextgraph.Rd
man/plot_wordcloud.Rd
man/plotnet.Rd
man/plotwc.Rd
man/process_network_gene.Rd
man/process_network_manual.Rd
man/process_network_microbe.Rd
man/refseqDESeq2.Rd
man/refseqWGCNA.Rd
man/returnExample.Rd
man/returnP.Rd
man/returnPyramid.Rd
man/returnQuanteda.Rd
man/returnSim.Rd
man/set_filter_words.Rd
man/tag_words.Rd
man/textORA.Rd
tests/testthat.R
tests/testthat/test-basic.R
vignettes/basic_usage_of_biotextgraph.Rmd
