connectGenes: connectGenes

In noriakis/wcGeneSummary: visualization and interpretation of textual information from omics summary data through network analysis

connectGenes

Description

Connect genes by words

Usage

connectGenes(nets, query_word, return_tbl_graph = FALSE, neighbors = FALSE)

Arguments

nets	named list of nets (if no names are given, automatically set)
query_word	word to connect
return_tbl_graph	return tbl_graph
neighbors	obtain neighbors words for queried words, default to FALSE

Details

When an interesting word is found in two or more networks, connect the words and gene names and return the graph. Note that genePlot must be set to TRUE in all the networks.

Value

igraph object

Examples

n1 <- refseq(c("IRF3","PNKP","DDX41","ERCC1","ERCC2","XRCC1"), genePlot=TRUE) 
n2 <- refseq(c("IRF3","PNKP","DDX41","ERCC1","ERCC2","XRCC1"), genePlot=TRUE)
connectGenes(list(n1, n2), query_word="dna")

noriakis/wcGeneSummary documentation built on May 31, 2024, 4:42 p.m.