perform_ora: perform_ora
In noriakis/wcGeneSummary: visualization and interpretation of textual information from omics summary data through network analysis
perform_ora R Documentation
perform_ora
Description
Performs ORA on obtained text data.
Usage
perform_ora(ret, threshold = 0.05)
Arguments
ret
biotext class
threshold
ORA threshold to filter (bonferroni-corrected p-value)
Details
Performs over representation analysis on the obtained text data.
Used only with biotext object with type 'refseq'.
Value
biotext class object
Examples
testgenes <- c("IRF3","PNKP","DDX41","ERCC1","ERCC2","XRCC1")
obtain_refseq(testgenes) |> perform_ora()
noriakis/wcGeneSummary documentation built on May 31, 2024, 4:42 p.m.
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| perform_ora | R Documentation |
perform_ora
Description
Performs ORA on obtained text data.
Usage
perform_ora(ret, threshold = 0.05)
Arguments
ret |
biotext class |
threshold |
ORA threshold to filter (bonferroni-corrected p-value) |
Details
Performs over representation analysis on the obtained text data. Used only with biotext object with type 'refseq'.
Value
biotext class object
Examples
testgenes <- c("IRF3","PNKP","DDX41","ERCC1","ERCC2","XRCC1")
obtain_refseq(testgenes) |> perform_ora()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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