returnSim: returnSim

In noriakis/wcGeneSummary: visualization and interpretation of textual information from omics summary data through network analysis

returnSim

Description

Return similarity matrix of cluster based on intersection over union of words

Usage

returnSim(
  cllist,
  keyType = "ENTREZID",
  numLimit = 5000,
  target = "refseq",
  argList = list()
)

Arguments

cllist	cluster list (named vector or list)
keyType	keytype
numLimit	threshold for gene number limit default to 5000
target	target to query
argList	parameters to pass to refseq()

Details

The function accepts the list of character vectors or named vector of identifiers to returns the textual similarity matrix.

Value

similarity matrix

Examples

ex <- returnExample()
returnSim(ex$color, keyType="ENSEMBL")

noriakis/wcGeneSummary documentation built on April 22, 2024, 7:12 a.m.