returnSim: returnSim

returnSimR Documentation

returnSim

Description

Return similarity matrix of cluster based on intersection over union of words

Usage

returnSim(
  cllist,
  keyType = "ENTREZID",
  numLimit = 5000,
  target = "refseq",
  argList = list()
)

Arguments

cllist

cluster list (named vector or list)

keyType

keytype

numLimit

threshold for gene number limit default to 5000

target

target to query

argList

parameters to pass to refseq()

Details

The function accepts the list of character vectors or named vector of identifiers to returns the textual similarity matrix.

Value

similarity matrix

Examples

ex <- returnExample()
returnSim(ex$color, keyType="ENSEMBL")

noriakis/wcGeneSummary documentation built on May 31, 2024, 4:42 p.m.