set_filter_words: set_filter_words

In noriakis/wcGeneSummary: visualization and interpretation of textual information from omics summary data through network analysis

set_filter_words

Description

Set filtering words to class.

Usage

set_filter_words(
  ret,
  exclude_by = "frequency",
  exclude_type = ">",
  exclude = "GS",
  exclude_number = 2000,
  filterMax = FALSE,
  additional_remove = NULL,
  pre = TRUE,
  pre_microbe = FALSE
)

Arguments

ret	biotext object
exclude_by	'frequency' or 'tfidf'
exclude_type	">" or "<"
exclude	GS for using GeneSummary,
exclude_number	threshold to exclude
filterMax	filter based on pre-computed maximum values for each word
additional_remove	your customized words to remove
pre	remove pre-defined words
pre_microbe	remove pre-defined words for microbes

Details

Set filtering words to class. If filtered words are already present, add the specified words to them.

Value

biotext class object

Examples

obtain_refseq(c("PNKP")) |> set_filter_words()

noriakis/wcGeneSummary documentation built on May 31, 2024, 4:42 p.m.