set_filter_words | R Documentation |
Set filtering words to class.
set_filter_words(
ret,
exclude_by = "frequency",
exclude_type = ">",
exclude = "GS",
exclude_number = 2000,
filterMax = FALSE,
additional_remove = NULL,
pre = TRUE,
pre_microbe = FALSE
)
ret |
biotext object |
exclude_by |
'frequency' or 'tfidf' |
exclude_type |
">" or "<" |
exclude |
GS for using GeneSummary, |
exclude_number |
threshold to exclude |
filterMax |
filter based on pre-computed maximum values for each word |
additional_remove |
your customized words to remove |
pre |
remove pre-defined words |
pre_microbe |
remove pre-defined words for microbes |
Set filtering words to class. If filtered words are already present, add the specified words to them.
biotext class object
obtain_refseq(c("PNKP")) |> set_filter_words()
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