# All R packages

- A3
- Accurate, Adaptable, and Accessible Error Metrics for Predictive Models
- a4
- Automated Affymetrix Array Analysis Umbrella Package
- a4Base
- Automated Affymetrix Array Analysis Base Package
- a4Classif
- Automated Affymetrix Array Analysis Classification Package
- a4Core
- Automated Affymetrix Array Analysis Core Package
- a4Core
- Automated Affymetrix Array Analysis Core Package
- a4Preproc
- Automated Affymetrix Array Analysis Preprocessing Package
- a4Reporting
- Automated Affymetrix Array Analysis Reporting Package
- a4Reporting
- Automated Affymetrix Array Analysis Reporting Package
- ABAEnrichment
- Gene expression enrichment in human brain regions
- ABarray
- Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.
- abbyyR
- Access to Abbyy Optical Character Recognition (OCR) API
- abc
- Tools for Approximate Bayesian Computation (ABC)
- ABCanalysis
- Computed ABC Analysis
- abc.data
- Data Only: Tools for Approximate Bayesian Computation (ABC)
- abcdeFBA
- ABCDE_FBA: A-Biologist-Can-Do-Everything of Flux Balance Analysis with this package.
- ABCoptim
- Implementation of Artificial Bee Colony (ABC) Optimization
- ABCp2
- Approximate Bayesian Computational Model for Estimating P2
- ABC.RAP
- Array Based CpG Region Analysis Pipeline
- abcrf
- Approximate Bayesian Computation via Random Forests
- abctools
- Tools for ABC Analyses
- abd
- The Analysis of Biological Data
- abd
- The Analysis of Biological Data
- abf2
- Load Gap-Free Axon ABF2 Files
- ABHgenotypeR
- Easy Visualization of ABH Genotypes
- abind
- Combine Multidimensional Arrays
- abind
- Combine Multidimensional Arrays
- abmi
- Data Processing and Analysis for the Alberta Biodiversity Monitoring Institute
- abmiOld
- Data Processing and Analysis for the Alberta Biodiversity Monitoring Institute
- abn
- Modelling Multivariate Data with Additive Bayesian Networks
- abodOutlier
- Angle-Based Outlier Detection
- abrem
- Abernethy Reliability Methods
- abremDebias
- Maximum Likelihood Estimation Models for Reliability Analysis
- abremout
- Output functions for the Abernethy Reliability Methods package (abrem), including plotting.
- abremPivotals
- Linear Rank Regression Models with Pivotal Monte Carlo Methods for Reliability Analysis
- AbsFilterGSEA
- Improved False Positive Control of Gene-Permuting GSEA with Absolute Filtering
- ABSSeq
- ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences
- abundant
- Abundant regression and high-dimensional principal fitted components
- ACA
- Abrupt Change-Point or Aberration Detection in Point Series
- acc
- Functions for Processing and Analyzing Accelerometer Data
- accelerometry
- Functions for Processing Minute-to-Minute Accelerometer Data
- accelerometry
- Functions for Processing Minute-to-Minute Accelerometer Data
- accelmissing
- Missing Value Imputation for Accelerometer Data
- AcceptABEL
- A package for controlling false positives rate in GWAS by estimating local inflation factor
- AcceptanceSampling
- Creation and Evaluation of Acceptance Sampling Plans
- ACCLMA
- ACC & LMA Graph Plotting
- accrual
- Bayesian Accrual Prediction
- accrued
- Data Quality Visualization Tools for Partially Accruing Data
- ACD
- Categorical data analysis with complete or missing responses
- acde
- Artificial Components Detection of Differentially Expressed Genes
- ACDm
- Tools for Autoregressive Conditional Duration Models
- acebayes
- Optimal Bayesian Experimental Design using the ACE Algorithm
- acepack
- ACE and AVAS for Selecting Multiple Regression Transformations
- ACEt
- Estimating Dynamic Heritability and Twin Model Comparison
- ACEt
- Estimating Dynamic Heritability and Twin Model Comparison
- aCGH
- Classes and functions for Array Comparative Genomic Hybridization data.
- acid
- Analysing Conditional Income Distributions
- acm4r
- Align-and-Count Method comparisons of RFLP data
- ACME
- Algorithms for Calculating Microarray Enrichment (ACME)
- acmeR
- Implements ACME Estimator of Bird and Bat Mortality by Wind Turbines
- ACNE
- Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization
- acnr
- Annotated Copy-Number Regions
- acnr
- Annotated Copy-Number Regions
- acopula
- Modelling dependence with multivariate Archimax (or any user-defined continuous) copulas.
- acp
- Autoregressive Conditional Poisson
- aCRM
- Convenience functions for analytical Customer Relationship Management
- AcrossTic
- A Cost-Minimal Regular Spanning Subgraph with TreeClust
- acs
- Download, Manipulate, and Present American Community Survey and Decennial Data from the US Census
- ACSNMineR
- Gene Enrichment Analysis from ACSN Maps or GMT Files
- acss
- Algorithmic Complexity for Short Strings
- acss.data
- Data Only: Algorithmic Complexity of Short Strings (Computed via Coding Theorem Method)
- ACSWR
- A Companion Package for the Book "A Course in Statistics with R"
- ACTCD
- Asymptotic Classification Theory for Cognitive Diagnosis
- Actigraphy
- Actigraphy Data Analysis
- activity
- Animal Activity Statistics
- activpalProcessing
- Process activPAL Events Files
- actuar
- Actuarial Functions and Heavy Tailed Distributions
- ActuDistns
- Functions for actuarial scientists
- ada
- The R Package Ada for Stochastic Boosting
- adabag
- Applies Multiclass AdaBoost.M1, SAMME and Bagging
- ADaCGH2
- Analysis of big data from aCGH experiments using parallel computing and ff objects
- adagio
- Discrete and Global Optimization Routines
- adagio
- Discrete and Global Optimization Routines
- AdapEnetClass
- A Class of Adaptive Elastic Net Methods for Censored Data
- adapr
- Implementation of an Accountable Data Analysis Process
- adaptDA
- Adaptive Mixture Discriminant Analysis
- AdaptFit
- Adaptive Semiparametic Regression
- AdaptFitOS
- Adaptive Semiparametric Regression with Simultaneous Confidence Bands
- AdaptGauss
- Gaussian Mixture Models (GMM)
- AdaptiveSparsity
- Adaptive Sparsity Models
- adaptivetau
- Tau-Leaping Stochastic Simulation
- adaptMCMC
- Implementation of a generic adaptive Monte Carlo Markov Chain sampler
- adaptsmoFMRI
- Adaptive Smoothing of FMRI Data
- adaptTest
- Adaptive two-stage tests
- ADCT
- Adaptive Design in Clinical Trials
- addhaz
- Binomial and Multinomial Additive Hazards Models
- addhazard
- Fit Additive Hazards Models for Survival Analysis
- addinslist
- Discover and Install Useful RStudio Addins
- additivityTests
- Additivity Tests in the Two Way Anova with Single Sub-class Numbers
- addreg
- Additive Regression for Discrete Data
- ADDT
- Analysis of Accelerated Destructive Degradation Test Data
- ade4
- Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences
- ade4
- Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences
- ade4TkGUI
- 'ade4' Tcl/Tk Graphical User Interface
- ade4TkGUI
- 'ade4' Tcl/Tk Graphical User Interface
- adegenet
- Exploratory Analysis of Genetic and Genomic Data
- adegraphics
- An S4 Lattice-Based Package for the Representation of Multivariate Data
- adegraphics
- An S4 Lattice-Based Package for the Representation of Multivariate Data
- adehabitat
- Analysis of Habitat Selection by Animals
- adehabitatHR
- Home Range Estimation
- adehabitatHS
- Analysis of Habitat Selection by Animals
- adehabitatLT
- Analysis of Animal Movements
- adehabitatMA
- Tools to Deal with Raster Maps
- adephylo
- adephylo: exploratory analyses for the phylogenetic comparative method.
- adephylo
- adephylo: exploratory analyses for the phylogenetic comparative method.
- AdequacyModel
- Adequacy of Probabilistic Models and General Purpose Optimization
- adespatial
- Multivariate Multiscale Spatial Analysis
- adespatial
- Multivariate Multiscale Spatial Analysis
- ADGofTest
- Anderson-Darling GoF test
- ADGofTest
- Anderson-Darling GoF test
- adhoc
- calculate ad hoc distance thresholds for DNA barcoding identification
- adimpro
- Adaptive Smoothing of Digital Images
- AdjBQR
- Adjusted Bayesian Quantile Regression Inference
- adlift
- An adaptive lifting scheme algorithm
- ADM3
- An Interpretation of the ADM method - automated detection algorithm.
- admbsecr
- SECR models with supplementary location information
- AdMit
- Adaptive Mixture of Student-t distributions
- admixturegraph
- Admixture Graph Manipulation and Fitting
- ADMMnet
- Regularized Model with Selecting the Number of Non-Zeros
- ADPclust
- Fast Clustering Using Adaptive Density Peak Detection
- ads
- Spatial point patterns analysis
- adSplit
- Annotation-Driven Clustering
- AdvBinomApps
- Upper Clopper-Pearson Confidence Limits for Burn-in Studies under Additional Available Information
- advclust
- Object Oriented Advanced Clustering
- advclust
- Object Oriented Advanced Clustering
- advfclust
- Fuzzy Clustering (Ensembling and Optimization)
- adwave
- Wavelet Analysis of Genomic Data from Admixed Populations
- AEDForecasting
- Change Point Analysis in ARIMA Forecasting
- AEM
- Tools to construct Asymmetric eigenvector maps (AEM) spatial variables
- aemo
- Download and Process AEMO Price and Demand Data
- AER
- Applied Econometrics with R
- AF
- Model-Based Estimation of Confounder-Adjusted Attributable Fractions
- afe
- Analysis of Factorial Experiments
- afex
- Analysis of Factorial Experiments
- afex
- Analysis of Factorial Experiments
- affxparser
- Affymetrix File Parsing SDK
- affy
- Methods for Affymetrix Oligonucleotide Arrays
- affycomp
- Graphics Toolbox for Assessment of Affymetrix Expression Measures
- AffyCompatible
- Affymetrix GeneChip software compatibility
- affyContam
- structured corruption of affymetrix cel file data
- affycoretools
- Functions useful for those doing repetitive analyses with Affymetrix GeneChips
- AffyExpress
- Affymetrix Quality Assessment and Analysis Tool
- affyILM
- Linear Model of background subtraction and the Langmuir isotherm
- affyio
- Tools for parsing Affymetrix data files
- affylmGUI
- GUI for limma package with Affymetrix microarrays
- affyPara
- Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays
- affypdnn
- Probe Dependent Nearest Neighbours (PDNN) for the affy package
- affyPLM
- Methods for fitting probe-level models
- affyQCReport
- QC Report Generation for affyBatch objects
- AffyRNADegradation
- Analyze and correct probe positional bias in microarray data due to RNA degradation
- AffyTiling
- Easy extraction of individual probes in Affymetrix tiling arrays
- AFLP
- Analysis of AFLP data
- AFLPsim
- Hybrid Simulation and Genome Scan for Dominant Markers
- AFM
- Atomic Force Microscope Image Analysis
- after
- Run Code in the Background
- aftgee
- Accelerated Failure Time Model with Generalized Estimating Equations
- AGD
- Analysis of Growth Data
- AGDEX
- Agreement of Differential Expression Analysis
- AggregateR
- Aggregate Numeric, Date and Categorical Variables by an ID
- agilp
- Agilent expression array processing package
- AgiMicroRna
- Processing and Differential Expression Analysis of Agilent microRNA chips
- agop
- Aggregation Operators and Preordered Sets
- agRee
- Various Methods for Measuring Agreement
- Agreement
- Statistical Tools for Measuring Agreement
- agricolae
- Statistical Procedures for Agricultural Research
- agridat
- Agricultural Datasets
- agrmt
- Calculate Agreement or Consensus in Ordered Rating Scales
- agrmt
- Calculate Agreement or Consensus in Ordered Rating Scales
- AGSDest
- Estimation in Adaptive Group Sequential Trials
- agsemisc
- Miscellaneous plotting and utility functions
- ahaz
- Regularization for semiparametric additive hazards regression
- AhoCorasickTrie
- Fast Searching for Multiple Keywords in Multiple Texts
- ahp
- Analytic Hierarchy Process
- AHR
- Estimation and Testing of Average Hazard Ratios
- AICcmodavg
- Model Selection and Multimodel Inference Based on (Q)AIC(c)
- AID
- Estimation of Box-Cox Power Transformation Parameter
- aidar
- Tools for reading AIDA (http://aida.freehep.org/) files into R
- AIM
- AIM: adaptive index model
- aimPlot
- Create Pie Like Plot for Completeness
- AIMS
- AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype
- Ake
- Associated Kernel Estimations
- akima
- Interpolation of Irregularly and Regularly Spaced Data
- akmeans
- Adaptive Kmeans algorithm based on threshold
- ALA
- Data sets and examples for the book "Applied Longitudinal Analysis"
- ALA4R
- Atlas of Living Australia (ALA) Data and Resources in R
- alabama
- Constrained Nonlinear Optimization
- alabama
- Constrained nonlinear optimization
- alakazam
- Immunoglobulin Clonal Lineage and Diversity Analysis
- ald
- The Asymmetric Laplace Distribution
- ALDEx2
- Analysis Of Differential Abundance Taking Sample Variation Into Account
- ALDqr
- Quantile Regression Using Asymmetric Laplace Distribution
- alfa
- Apache Log File Analysis
- aLFQ
- Estimating Absolute Protein Quantities from Label-Free LC-MS/MS Proteomics Data
- AlgDesign
- Algorithmic Experimental Design
- AlgebraicHaploPackage
- Haplotype Two Snips Out of a Paired Group of Patients
- algorithmia
- Allows you to Easily Interact with the Algorithmia Platform
- algstat
- Algebraic statistics in R
- AlignStat
- Comparison of Alternative Multiple Sequence Alignments
- alineR
- Alignment of Phonetic Sequences Using the 'ALINE' Algorithm
- ALKr
- Generate Age-Length Keys for fish populations
- allan
- Automated Large Linear Analysis Node
- allanvar
- Allan Variance Analysis
- alleHap
- Allele Imputation and Haplotype Reconstruction from Pedigree Databases
- allelematch
- Identifying unique multilocus genotypes where genotyping error and missing data may be present
- AlleleRetain
- Allele Retention, Inbreeding, and Demography
- allelic
- A fast, unbiased and exact allelic exact test
- AllelicImbalance
- Investigates Allele Specific Expression
- AllPossibleSpellings
- Computes all of a word's possible spellings.
- alluvial
- Alluvial Diagrams
- alm
- R Client for the Lagotto Altmetrics Platform
- alpha
- Robust Cronbach's alpha with missing and non-normal data
- alphahull
- Generalization of the Convex Hull of a Sample of Points in the Plane
- alphaOutlier
- Obtain Alpha-Outlier Regions for Well-Known Probability Distributions
- alphashape3d
- Implementation of the 3D Alpha-Shape for the Reconstruction of 3D Sets from a Point Cloud
- alpine
- alpine
- alplot
- Plot array lists
- alr
- alternating logistic regression
- alr3
- Data to accompany Applied Linear Regression 3rd edition
- alr3
- Data to accompany Applied Linear Regression 3rd edition
- alr4
- Data to accompany Applied Linear Regression 4rd edition
- alr4
- Data to accompany Applied Linear Regression 4th edition
- ALS
- Multivariate Curve Resolution Alternating Least Squares (MCR-ALS)
- alsace
- ALS for the Automatic Chemical Exploration of mixtures
- ALSCPC
- Accelerated line search algorithm for simultaneous orthogonal transformation of several positive definite symmetric matrices to nearly diagonal form.
- ALSM
- Companion to Applied Linear Statistical Models
- altcdfenvs
- alternative CDF environments (aka probeset mappings)
- altmeta
- Alternative Meta-Analysis Methods
- ALTopt
- Optimal Experimental Designs for Accelerated Life Testing
- amap
- Another Multidimensional Analysis Package
- AMAP.Seq
- Compare Gene Expressions from 2-Treatment RNA-Seq Experiments
- ambur
- Analyzing Moving Boundaries Using R
- amburhva
- AMBUR-HVA
- AMCP
- A Multiple Comparison Perspective
- ameco
- European Commission Annual Macro-Economic (AMECO) Database
- amei
- Adaptive Management of Epidemiological Interventions
- Amelia
- A Program for Missing Data
- amen
- Additive and Multiplicative Effects Models for Networks and Relational Data
- AmericanCallOpt
- This package includes pricing function for selected American call options with underlying assets that generate payouts.
- AMGET
- Post-processing tool for ADAPT 5
- aml
- Adaptive Mixed LASSO
- AMModels
- Adaptive Management Model Manager
- AmmoniaConcentration
- Un-Ionized Ammonia Concentration
- AMOEBA
- A Multidirectional Optimum Ecotope-Based Algorithm
- AMORE
- A MORE flexible neural network package
- AmostraBrasil
- Generates Samples or Complete List of Brazilian IBGE (Instituto Brasileiro De Geografia e Estatistica) Census Households, Geocoding it by Google Maps
- AMOUNTAIN
- Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach
- ampd
- An Algorithm for Automatic Peak Detection in Noisy Periodic and Quasi- Periodic Signals
- AmpliconDuo
- Statistical Analysis of Amplicon Data of the Same Sample to Identify Artefacts
- ampliQueso
- Analysis of amplicon enrichment panels
- AmyloGram
- Prediction of Amyloid Proteins
- anacor
- Simple and Canonical Correspondence Analysis
- analogsea
- Interface to 'Digital Ocean'
- analogue
- Analogue and Weighted Averaging Methods for Palaeoecology
- analogueExtra
- Additional Functions for Use with the Analogue Package
- AnalysisPageServer
- A framework for sharing interactive data and plots from R through the web.
- analyz
- Model Layer for Automatic Data Analysis via CSV File Interpretation
- AnalyzeFMRI
- Functions for analysis of fMRI datasets stored in the ANALYZE or NIFTI format.
- AnalyzeTS
- Analyze Fuzzy Time Series
- anametrix
- Bidirectional Connector to Anametrix API
- anamiR
- An integrated analysis package of miRNA and mRNA expression data
- anapuce
- Tools for microarray data analysis
- Anaquin
- Statistical analysis of sequins
- AncestryMapper
- Assigning Ancestry Based on Population References
- anchors
- Statistical analysis of surveys with anchoring vignettes
- AnDE
- An extended Bayesian Learning Technique developed by Dr. Geoff Webb
- andrews
- Andrews curves
- anesrake
- ANES Raking Implementation
- AneuFinder
- Analysis of Copy Number Variation in Single-Cell-Sequencing Data
- anfis
- Adaptive Neuro Fuzzy Inference System in R
- AnglerCreelSurveySimulation
- Simulate a Bus Route Creel Survey of Anglers
- Animal
- Analyze time-coded animal behavior data
- animalTrack
- Animal track reconstruction for high frequency 2-dimensional (2D) or 3-dimensional (3D) movement data.
- animation
- A Gallery of Animations in Statistics and Utilities to Create Animations
- anim.plots
- Simple Animated Plots For R
- ANLP
- Build Text Prediction Model
- ANN
- Feedforward Artificial Neural Network optimized by Genetic Algorithm
- annaffy
- Annotation tools for Affymetrix biological metadata
- annmap
- Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.
- annotate
- Annotation for microarrays
- AnnotationDbi
- Annotation Database Interface
- AnnotationForge
- Code for Building Annotation Database Packages
- AnnotationFuncs
- Annotation translation functions
- AnnotationHub
- Client to access AnnotationHub resources
- AnnotationHubData
- Transform public data resources into Bioconductor Data Structures
- annotationTools
- Annotate microarrays and perform cross-species gene expression analyses using flat file databases.
- annotatr
- Annotation of Genomic Regions to Genomic Annotations
- AnnotLists
- AnnotLists: A tool to annotate multiple lists from a specific annotation file.
- anoint
- Analysis of Interactions
- ANOM
- Analysis of Means
- anominate
- alpha-NOMINATE Ideal Point Estimator
- anonymizer
- Anonymize Data Containing Personally Identifiable Information
- anota
- ANalysis Of Translational Activity (ANOTA).
- ant
- Version of ant specific to R
- AntAngioCOOL
- Anti-Angiogenic Peptide Prediction
- AnthropMMD
- A GUI for Mean Measures of Divergence
- Anthropometry
- Statistical Methods for Anthropometric Data
- antiProfiles
- Implementation of gene expression anti-profiles
- antitrust
- Tools for Antitrust Practitioners
- AntWeb
- programmatic interface to the AntWeb
- anytime
- Anything to 'POSIXct' or 'Date' Converter
- aod
- Analysis of Overdispersed Data
- aods3
- Analysis of Overdispersed Data using S3 methods
- aoos
- Another Object Orientation System
- aop
- Adverse Outcome Pathway Analysis
- aoristic
- aoristic analysis with spatial output (kml)
- apa
- Format Outputs of Statistical Tests According to APA Guidelines
- ApacheLogProcessor
- Process the Apache Web Server Access Log Files
- apaStyle
- Generate APA Tables for MS Word
- apaTables
- Create American Psychological Association (APA) Style Tables
- apc
- Age-Period-Cohort Analysis
- apcluster
- Affinity Propagation Clustering
- apComplex
- Estimate protein complex membership using AP-MS protein data
- apdesign
- An Implementation of the Additive Polynomial Design Matrix
- ape
- Analyses of Phylogenetics and Evolution
- apex
- Phylogenetic Methods for Multiple Gene Data
- apicultuR
- A wrapper to the apicultuR set of APIs for NLP in Spanish
- aplore3
- Datasets from Hosmer, Lemeshow and Sturdivant, "Applied Logistic Regression" (3rd Ed., 2013)
- aplpack
- Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, plotsummary, plothulls, and some slider functions
- apmsWAPP
- Pre- and Postprocessing for AP-MS data analysis based on spectral counts
- appell
- Compute Appell's F1 hypergeometric function
- apple
- Approximate Path for Penalized Likelihood Estimators
- AppliedPredictiveModeling
- Functions and Data Sets for 'Applied Predictive Modeling'
- AppliedPredictiveModeling
- Functions and Data Sets for 'Applied Predictive Modeling'
- appnn
- Amyloid Propensity Prediction Neural Network
- approximator
- Bayesian prediction of complex computer codes
- APR
- Applied Psychometrics With R
- aprean3
- Datasets from Draper and Smith "Applied Regression Analysis" (3rd Ed., 1998)
- apricom
- Tools for the a Priori Comparison of Regression Modelling Strategies
- aprof
- Amdahl's Profiler, Directed Optimization Made Easy
- APSIM
- General Utility Functions for the 'Agricultural Production Systems Simulator'
- APSIMBatch
- Analysis the output of Apsim software
- apsimr
- Edit, Run and Evaluate APSIM Simulations Easily Using R
- apsrtable
- apsrtable model-output formatter for social science
- apt
- Asymmetric Price Transmission
- APtools
- Average Positive Predictive Values (AP) for Binary Outcomes and Censored Event Times
- apTreeshape
- Analyses of Phylogenetic Treeshape
- aqfig
- Functions to help display air quality model output and monitoring data
- aqp
- Algorithms for Quantitative Pedology
- aqp
- Algorithms for Quantitative Pedology
- aqr
- Interface methods to use with an ActiveQuant Master Server
- aqr
- Interface methods to use with an ActiveQuant Master Server
- AquaEnv
- Integrated Development Toolbox for Aquatic Chemical Model Generation
- AquaEnv
- Integrated Development Toolbox for Aquatic Chemical Model Generation
- AR1seg
- Segmentation of an autoregressive Gaussian process of order 1
- arabicStemR
- Arabic Stemmer for Text Analysis
- ArArRedux
- Rigorous Data Reduction and Error Propagation of Ar40 / Ar39 Data
- arc
- Association Rule Classification
- ARCensReg
- Fitting Univariate Censored Linear Regression Model with Autoregressive Errors
- archdata
- Example Datasets from Archaeological Research
- archetypes
- Archetypal Analysis
- archetypes
- Archetypal Analysis
- archiDART
- Plant Root System Architecture Analysis Using DART and RSML Files
- archivist
- Tools for Storing, Restoring and Searching for R Objects
- archivist.github
- Tools for Archiving, Managing and Sharing R Objects via GitHub
- ArDec
- Time series autoregressive-based decomposition
- arf3DS4
- Activated Region Fitting, fMRI data analysis (3D).
- arf3DS4
- Activated Region Fitting, fMRI data analysis (3D).
- arfima
- Fractional ARIMA (and Other Long Memory) Time Series Modeling
- ArfimaMLM
- Arfima-MLM Estimation For Repeated Cross-Sectional Data
- arfS4
- Activated Region Fitting, fMRI data analysis.
- argosfilter
- Argos locations filter
- argparse
- Command Line Optional and Positional Argument Parser
- argparser
- Command-Line Argument Parser
- ArgumentCheck
- Improved Communication to Users with Respect to Problems in Function Arguments
- arm
- Data Analysis Using Regression and Multilevel/Hierarchical Models
- arm
- Data Analysis Using Regression and Multilevel/Hierarchical Models
- arnie
- "Arnie" box office records 1982-2014
- aroma.affymetrix
- Analysis of Large Affymetrix Microarray Data Sets
- aroma.apd
- A Probe-Level Data File Format Used by 'aroma.affymetrix' [deprecated]
- aroma.apd
- A probe-level data file format used by aroma.affymetrix [DEPRECATED]
- aroma.cn
- Copy-Number Analysis of Large Microarray Data Sets
- aroma.core
- Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework
- aroma.light
- Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types
- aroma.tcga
- Methods for accessing online The Cancer Genome Atlas (TCGA) data
- ARPobservation
- Tools for Simulating Direct Behavioral Observation Recording Procedures Based on Alternating Renewal Processes
- aRpsDCA
- Arps Decline Curve Analysis in R
- arrApply
- Apply a Function to a Margin of an Array
- array
- Array factor for 2D periodic arrays
- ArrayBin
- Binarization of numeric data arrays
- ArrayExpress
- Access the ArrayExpress Microarray Database at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
- ArrayExpressHTS
- ArrayExpress High Throughput Sequencing Processing Pipeline
- arrayhelpers
- Convenience Functions for Arrays
- arrayhelpers
- Convenience Functions for Arrays
- arrayMvout
- multivariate outlier detection for expression array QA
- arrayQuality
- Assessing array quality on spotted arrays
- arrayQualityMetrics
- Quality metrics report for microarray data sets
- ArrayTools
- geneChip Analysis Package
- ArrayTV
- Implementation of wave correction for arrays
- ARRmNormalization
- Adaptive Robust Regression normalization for Illumina methylation data
- ars
- Adaptive Rejection Sampling
- ART
- Aligned Rank Transform for Nonparametric Factorial Analysis
- artfima
- ARTFIMA Model Estimation
- ARTIVA
- Time-Varying DBN Inference with the ARTIVA (Auto Regressive TIme VArying) Model
- ARTool
- Aligned Rank Transform
- ARTP
- Gene and Pathway p-values computed using the Adaptive Rank Truncated Product
- ARTP2
- Pathway and Gene-Level Association Test
- arules
- Mining Association Rules and Frequent Itemsets
- arulesCBA
- Classification Based on Association Rules
- arulesNBMiner
- Mining NB-Frequent Itemsets and NB-Precise Rules
- arulesNBMiner
- Mining NB-Frequent Itemsets and NB-Precise Rules
- arulesSequences
- Mining Frequent Sequences
- arulesViz
- Visualizing Association Rules and Frequent Itemsets
- arulesViz
- Visualizing Association Rules and Frequent Itemsets
- arulesVizOld
- arulesViz - Visualizing Association Rules and Frequent Itemsets
- aRxiv
- Interface to the arXiv API
- ASAFE
- Ancestry Specific Allele Frequency Estimation
- ASAtable
- Model-output formatter for sociological research.
- asaur
- Data Sets for "Applied Survival Analysis Using R""
- asbio
- A Collection of Statistical Tools for Biologists
- ascii
- Export R objects to several markup languages
- as.color
- Assign Random Colors to Unique Items in a Vector
- asd
- Simulations for Adaptive Seamless Designs
- asdreader
- Reading ASD Binary Files in R
- ASEB
- Predict Acetylated Lysine Sites
- ASGSCA
- Association Studies for multiple SNPs and multiple traits using Generalized Structured Equation Models
- ash
- David Scott's ASH Routines
- asht
- Applied Statistical Hypothesis Tests
- AsioHeaders
- 'Asio' C++ Header Files
- aslib
- Interface to the Algorithm Selection Benchmark Library
- ASMap
- Linkage Map Construction using the MSTmap Algorithm
- asmn
- All sample mean normalization.
- asnipe
- Animal Social Network Inference and Permutations for Ecologists
- aspace
- A collection of functions for estimating centrographic statistics and computational geometries for spatial point patterns
- ASPBay
- Bayesian Inference on Causal Genetic Variants using Affected Sib-Pairs Data
- aspect
- A General Framework for Multivariate Analysis with Optimal Scaling
- aspect
- A General Framework for Multivariate Analysis with Optimal Scaling
- aspi
- Analysis of Symmetry of Parasitic Infections
- ASpli
- Analysis of alternative splicing using RNA-Seq
- aSPU
- Adaptive Sum of Powered Score Test
- asremlPlus
- Augments the Use of 'ASReml-R' in Fitting Mixed Models
- assertive
- Readable Check Functions to Ensure Code Integrity
- assertive.base
- A Lightweight Core of the 'assertive' Package
- assertive.code
- Assertions to Check Properties of Code
- assertive.data
- Assertions to Check Properties of Data
- assertive.data.uk
- Assertions to Check Properties of Strings
- assertive.data.us
- Assertions to Check Properties of Strings
- assertive.datetimes
- Assertions to Check Properties of Dates and Times
- assertive.files
- Assertions to Check Properties of Files
- assertive.matrices
- Assertions to Check Properties of Matrices
- assertive.models
- Assertions to Check Properties of Models
- assertive.numbers
- Assertions to Check Properties of Numbers
- assertive.properties
- Assertions to Check Properties of Variables
- assertive.reflection
- Assertions for Checking the State of R
- assertive.sets
- Assertions to Check Properties of Sets
- assertive.strings
- Assertions to Check Properties of Strings
- assertive.types
- Assertions to Check Types of Variables
- assertr
- Assertive Programming for R Analysis Pipelines
- assertthat
- Easy pre and post assertions.
- ASSET
- An R package for subset-based association analysis of heterogeneous traits and subtypes
- ASSET
- An R package for subset-based association analysis of heterogeneous traits and subtypes
- AssetPricing
- Optimal pricing of assets with fixed expiry date.
- ASSIGN
- Adaptive Signature Selection and InteGratioN (ASSIGN)
- assist
- A Suite of R Functions Implementing Spline Smoothing Techniques
- ASSISTant
- Adaptive Subgroup Selection in Group Sequential Trials
- AssocTests
- Genetic Association Studies
- assortnet
- Calculate the Assortativity Coefficient of Weighted and Binary Networks
- AssotesteR
- Statistical Tests for Genetic Association Studies
- aster
- Aster Models
- aster2
- Aster Models
- astro
- Astronomy Functions, Tools and Routines
- astrochron
- A Computational Tool for Astrochronology
- astrodatR
- Astronomical Data
- astroFns
- Astronomy: time and position functions, misc. utilities
- astrolibR
- Astronomy Users Library
- astsa
- Applied Statistical Time Series Analysis
- asuR
- Advanced statistics using R
- asVPC
- Average Shifted Visual Predictive Checks
- asymLD
- Asymmetric Linkage Disequilibrium (ALD) for Polymorphic Genetic Data
- asymmetry
- Visualizing Asymmetric Data
- asympTest
- Asymptotic statistic
- AsynchLong
- Regression Analysis of Sparse Asynchronous Longitudinal Data
- asypow
- Calculate Power Utilizing Asymptotic Likelihood Ratio Methods
- ATE
- Inference for Average Treatment Effects using Covariate Balancing
- AtelieR
- A GTK GUI for teaching basic concepts in statistical inference, and doing elementary bayesian tests.
- AtelieR
- A GTK GUI for teaching basic concepts in statistical inference, and doing elementary bayesian tests.
- AtlasRDF
- Gene Expression Atlas query and gene set enrichment package.
- atmcmc
- Automatically Tuned Markov Chain Monte Carlo
- ATmet
- Advanced Tools for Metrology
- atmosphere
- weather and climate analysis
- AtmRay
- Acoustic Traveltime Calculations for 1-D Atmospheric Models
- Atools
- Atools
- aTSA
- Alternative Time Series Analysis
- atsd
- Support Querying Axibase Time-Series Database
- attract
- Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape
- attribrisk
- Population Attributable Risk
- AUC
- Threshold independent performance measures for probabilistic classifiers.
- aucm
- AUC Maximization
- AUCRF
- Variable Selection with Random Forest and the Area Under the Curve
- audio
- Audio Interface for R
- audiolyzR
- audiolyzR: Give your data a listen
- audit
- Bounds for Accounting Populations
- audited
- Automatic Tracing and Display of Changes to Row Count
- aurelhy
- Hydrometeorological interpolation
- auRoc
- Various Methods to Estimate the AUC
- austin
- A package for doing things with words
- AUtests
- Approximate Unconditional and Permutation Tests
- autocorr
- Testing Autocorrelation through bootstrap and surrogate methods
- AutoDeskR
- An Interface to the 'AutoDesk' 'API'
- autoencoder
- Sparse Autoencoder for Automatic Learning of Representative Features from Unlabeled Data
- autoimage
- Display Multiple Images with Scaled Colors
- automap
- Automatic interpolation package
- AutoModel
- Automated Hierarchical Multiple Regression with Assumptions Checking
- automultinomial
- Autologistic and Automultinomial Spatial Regression and Variable Selection
- autopls
- Partial Least Squares Regression with Backward Selection of Predictors
- AutoregressionMDE
- Minimum Distance Estimation in Autoregressive Model
- AutoSEARCH
- General-to-Specific (GETS) Modelling
- autoSEM
- Performs Specification Search in Structural Equation Models
- autovarCore
- Automated Vector Autoregression Models and Networks
- averisk
- Calculation of Average Population Attributable Fractions and Confidence Intervals
- aVirtualTwins
- Adaptation of Virtual Twins Method from Jared Foster
- aws
- Adaptive Weights Smoothing
- aws.alexa
- Client for the Amazon Alexa Web Information Services API
- awsMethods
- Class and Methods Definitions for Packages 'aws', 'adimpro', 'fmri', 'dwi'
- aws.signature
- Amazon Web Services Request Signatures
- aylmer
- A generalization of Fisher's exact test
- AzureML
- Interface with Azure Machine Learning Datasets, Experiments and Web Services
- B2Z
- Bayesian Two-Zone Model
- b6e6rl
- Adaptive differential evolution, b6e6rl variant
- BaalChIP
- BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes
- babar
- Bayesian Bacterial Growth Curve Analysis in R
- babel
- Ribosome Profiling Data Analysis
- BaBooN
- Bayesian Bootstrap Predictive Mean Matching - Multiple and Single Imputation for Discrete Data
- babynames
- US Baby Names 1880-2014
- BAC
- Bayesian Analysis of Chip-chip experiment
- BACA
- Bubble Chart to Compare Biological Annotations by using DAVID
- BacArena
- Modeling Framework for Cellular Communities in their Environments
- BACCO
- Bayesian Analysis of Computer Code Output (BACCO)
- BACCT
- Bayesian Augmented Control for Clinical Trials
- backblazer
- Bindings to the Backblaze B2 API
- background
- This packages allow users to ``background'' computations.
- backpipe
- Backward Pipe Operator
- backports
- Reimplementations of Functions Introduced Since R-3.0.0
- backShift
- Learning Causal Cyclic Graphs from Unknown Shift Interventions
- backtest
- Exploring Portfolio-Based Conjectures About Financial Instruments
- backtestGraphics
- Interactive Graphics for Portfolio Data
- bacon
- Controlling bias and inflation in association studies using the empirical null distribution
- BACprior
- Choice of the Hyperparameter Omega in the Bayesian Adjustment for Confounding (BAC) Algorithm
- bacr
- Bayesian Adjustment for Confounding
- BADER
- Bayesian Analysis of Differential Expression in RNA Sequencing Data
- badgecreatr
- Create Badges for 'Travis', 'Repostatus' 'Codecov.io' Etc in Github Readme
- BADGER
- A package for identifying sample mixups in combined expression and genotyping studies.
- BadRegionFinder
- BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage
- BAEssd
- Bayesian Average Error approach to Sample Size Determination
- Bagidis
- BAses GIving DIStances
- bagRboostR
- Ensemble bagging and boosting classifiers
- BAGS
- A Bayesian Approach for Geneset Selection
- BalanceCheck
- Balance Check for Multiple Covariates in Matched Observational Studies
- BalancedSampling
- Balanced and Spatially Balanced Sampling
- ballgown
- Flexible, isoform-level differential expression analysis
- BaM
- Functions and Datasets for Books by Jeff Gill
- bamdit
- Bayesian Meta-Analysis of Diagnostic Test Data
- bamlss
- Bayesian Additive Models for Location Scale and Shape (and Beyond)
- BAMMtools
- Analysis and Visualization of Macroevolutionary Dynamics on Phylogenetic Trees
- bamsignals
- Extract read count signals from bam files
- bandit
- Functions for simple A/B split test and multi-armed bandit analysis
- BANFF
- Bayesian Network Feature Finder
- bannerCommenter
- Make Banner Comments with a Consistent Format
- BANOVA
- Hierarchical Bayesian ANOVA Models
- banxicoR
- Download Data from the Bank of Mexico
- BAPC
- Projection of cancer incidence and mortality data using Bayesian APC models fitted with INLA
- bapred
- Batch Effect Removal and Addon Normalization (in Phenotype Prediction using Gene Data)
- BaPreStoPro
- Bayesian Prediction of Stochastic Processes
- barcode
- Barcode distribution plots
- barcode
- Barcode distribution plots
- BarcodingR
- Species Identification using DNA Barcodes
- barebone
- Multivariate Methods in Ecology with R: Basic Algorithms
- Barnard
- Barnard's Unconditional Test
- bartMachine
- Bayesian Additive Regression Trees
- bartMachineJARs
- bartMachine JARs
- Barycenter
- Wasserstein Barycenter
- BAS
- Bayesian Model Averaging using Bayesian Adaptive Sampling
- base64
- Base64 Encoder and Decoder
- base64
- Base 64 encoder/decoder
- base64enc
- Tools for base64 encoding
- base64url
- Fast and URL-Safe Base64 Encoder and Decoder
- basefun
- Infrastructure for Computing with Basis Functions
- basefun
- Infrastructure for Computing with Basis Functions
- baseline
- Baseline Correction of Spectra
- BaseSpaceR
- R SDK for BaseSpace RESTful API
- Basic4Cseq
- Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data
- basicspace
- Recovering a Basic Space from Issue Scales
- BasicSTARRseq
- Basic peak calling on STARR-seq data
- BASIX
- BASIX: An efficient C/C++ toolset for R.
- BaSTA
- Age-Specific Survival Analysis from Incomplete Capture-Recapture/Recovery Data
- bastah
- Big Data Statistical Analysis for High-Dimensional Models
- BAT
- Biodiversity Assessment Tools
- batade
- HTML reports and so on
- batch
- Batching Routines in Parallel and Passing Command-Line Arguments to R
- BatchExperiments
- Statistical Experiments on Batch Computing Clusters
- BatchGetSymbols
- Downloads and Organizes Financial Data for Multiple Tickers
- BatchJobs
- Batch Computing with R
- batchmeans
- Consistent Batch Means Estimation of Monte Carlo Standard Errors
- BatchQC
- Batch Effects Quality Control Software
- batchtools
- Tools for Computation on Batch Systems
- batman
- Convert Categorical Representations of Logicals to Actual Logicals
- batman
- Bayesian AuTomated Metabolite Analyser for NMR spectra
- batteryreduction
- An R Package for Data Reduction by Battery Reduction
- baybi
- Bayesian Biclustering with Subject and Variable Importance
- BayClone2
- Bayesian Feature Allocation Model for Tumor Heterogeneity
- bayesAB
- Fast Bayesian Methods for AB Testing
- BayesBD
- Bayesian Inference for Image Boundaries
- BayesBinMix
- Bayesian Estimation of Mixtures of Multivariate Bernoulli Distributions
- bayesbio
- Miscellaneous Functions for Bioinformatics and Bayesian Statistics
- bayesboot
- An Implementation of Rubin's (1981) Bayesian Bootstrap
- BayesBridge
- Bridge Regression
- BayesComm
- Bayesian Community Ecology Analysis
- bayescount
- Power Calculations and Bayesian Analysis of Count Distributions and FECRT Data using MCMC
- BayesCR
- Bayesian Analysis of Censored Regression Models Under Scale Mixture of Skew Normal Distributions
- BayesDA
- Functions and Datasets for the book "Bayesian Data Analysis"
- bayesDccGarch
- The Bayesian Dynamic Conditional Correlation GARCH Model
- bayesDem
- Graphical User Interface for bayesTFR, bayesLife and bayesPop
- bayesdnamix
- Procedure for evaluate marginal likelihood for quantitative STR DNA mixture bayesian models
- BayesFactor
- Computation of Bayes factors for common designs
- BayesFactor
- Computation of Bayes Factors for Common Designs
- BayesFactors.gibi
- Compute Bayes factors using the GIBI interface
- BayesFM
- Bayesian Inference for Factor Modeling
- bayesGARCH
- Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations
- bayesGDS
- Scalable Rejection Sampling for Bayesian Hierarchical Models
- BayesGESM
- Bayesian Analysis of Generalized Elliptical Semi-Parametric Models and Flexible Measurement Error Models
- BayesH
- Bayesian Regression Model with Mixture of Two Scaled Inverse Chi Square as Hyperprior
- BayesianAnimalTracker
- Bayesian Melding of GPS and DR Path for Animal Tracking
- Bayesianbetareg
- Bayesian Beta regression: joint mean and precision modeling
- BayesianNetwork
- Bayesian Network Modeling and Analysis
- bayesImageS
- Bayesian Methods for Image Segmentation using a Potts Model
- BayesKnockdown
- BayesKnockdown: Posterior Probabilities for Edges from Knockdown Data
- BayesLCA
- Bayesian Latent Class Analysis
- bayesLife
- Bayesian Projection of Life Expectancy
- BayesLogit
- Logistic Regression
- bayesm
- Bayesian Inference for Marketing/Micro-Econometrics
- BayesMAMS
- Designing Bayesian Multi-Arm Multi-Stage Studies
- bayesMCClust
- Mixtures-of-Experts Markov Chain Clustering and Dirichlet Multinomial Clustering
- BayesMed
- Default Bayesian Hypothesis Tests for Correlation, Partial Correlation, and Mediation
- bayesmeta
- Bayesian Random-Effects Meta-Analysis
- bayesmix
- Bayesian Mixture Models with JAGS
- BayesMixSurv
- Bayesian Mixture Survival Models using Additive Mixture-of-Weibull Hazards, with Lasso Shrinkage and Stratification
- BayesNI
- BayesNI: Bayesian Testing Procedure for Noninferiority with Binary Endpoints
- BayesPeak
- Bayesian Analysis of ChIP-seq Data
- BayesPiecewiseICAR
- Hierarchical Bayesian Model for a Hazard Function
- bayesplot
- Plotting for Bayesian Models
- bayesPop
- Probabilistic Population Projection
- bayespref
- Hierarchical Bayesian analysis of ecological count data
- bayesQR
- Bayesian quantile regression
- BayesR
- Bayesian Regression in R
- bayesreg
- Bayesian Regression Models with Continuous Shrinkage Priors
- bayess
- Bayesian Essentials with R
- BayesSAE
- Bayesian Analysis of Small Area Estimation
- BayesSingleSub
- Computation of Bayes factors for interrupted time-series designs
- BayesSingleSub
- Computation of Bayes factors for interrupted time-series designs
- BayesSummaryStatLM
- MCMC Sampling of Bayesian Linear Models via Summary Statistics
- bayesSurv
- Bayesian Survival Regression with Flexible Error and Random Effects Distributions
- bayesTFR
- Bayesian Fertility Projection
- Bayesthresh
- Bayesian thresholds mixed-effects models for categorical data
- BayesTree
- Bayesian Additive Regression Trees
- BayesTreePrior
- Bayesian Tree Prior Simulation
- BayesValidate
- BayesValidate Package
- BayesVarSel
- Bayes Factors, Model Choice and Variable Selection in Linear Models
- BayesX
- R Utilities Accompanying the Software Package BayesX
- BayesXdev
- R Package Distribution of the BayesX C++ Development Sources
- BayesXsrc
- R Package Distribution of the BayesX C++ Sources
- BayHap
- Bayesian analysis of haplotype association using Markov Chain Monte Carlo
- BayHaz
- R Functions for Bayesian Hazard Rate Estimation
- BaylorEdPsych
- R Package for Baylor University Educational Psychology Quantitative Courses
- bayou
- Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies
- baySeq
- Empirical Bayesian analysis of patterns of differential expression in count data
- BaySIC
- Bayesian Analysis of Significantly Mutated Genes in Cancer
- BAYSTAR
- On Bayesian analysis of Threshold autoregressive model (BAYSTAR)
- BB
- Solving and Optimizing Large-Scale Nonlinear Systems
- BB
- Solving and Optimizing Large-Scale Nonlinear Systems
- BBCAnalyzer
- BBCAnalyzer: an R/Bioconductor package for visualizing base counts
- bbefkr
- Bayesian bandwidth estimation and semi-metric selection for the functional kernel regression with unknown error density
- bbemkr
- Bayesian bandwidth estimation for multivariate kernel regression with Gaussian error
- BBEST
- Bayesian Estimation of Incoherent Neutron Scattering Backgrounds
- BBmisc
- Miscellaneous Helper Functions for B. Bischl
- bbmle
- Tools for General Maximum Likelihood Estimation
- bbmle
- Tools for general maximum likelihood estimation
- BBMM
- Brownian bridge movement model
- bbo
- Biogeography-Based Optimization
- BBRecapture
- Bayesian Behavioural Capture-Recapture Models
- bc3net
- Gene Regulatory Network Inference with Bc3net
- BCA
- Business and Customer Analytics
- BCBCSF
- Bias-Corrected Bayesian Classification with Selected Features
- BCDating
- Business Cycle Dating and Plotting Tools
- BcDiag
- Diagnostics Plots for Bicluster Data
- BcDiag
- Diagnostics Plots for Bicluster Data
- BCE
- Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data
- BCE
- Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data
- BCEA
- Bayesian Cost Effectiveness Analysis
- BCEE
- The Bayesian Causal Effect Estimation Algorithm
- BCellMA
- B Cell Receptor Somatic Hyper Mutation Analysis
- BCEs0
- Bayesian Models for Cost-Effectiveness Analysis in the Presence of Structural Zero Costs
- Bchron
- Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate Estimation, and Non-Parametric Phase Modelling
- Bclim
- Bayesian Palaeoclimate Reconstruction from Pollen Data
- bclust
- Bayesian Hierarchical Clustering Using Spike and Slab Models
- bclust
- Bayesian Hierarchical Clustering Using Spike and Slab Models
- bcp
- Bayesian Analysis of Change Point Problems
- bcpa
- Behavioral change point analysis of animal movement
- bcpmeta
- Bayesian Multiple Changepoint Detection Using Metadata
- BCRA
- Breast Cancer Risk Assessment
- BCRANK
- Predicting binding site consensus from ranked DNA sequences
- bcRep
- Advanced Analysis of B Cell Receptor Repertoire Data
- bcrm
- Bayesian Continual Reassessment Method for Phase I Dose-Escalation Trials
- bcROCsurface
- Bias-Corrected Methods for Estimating the ROC Surface of Continuous Diagnostic Tests
- bcrypt
- 'Blowfish' Password Hashing Algorithm
- BCSub
- A Bayesian Semiparametric Factor Analysis Model for Subtype Identification (Clustering)
- bcv
- Cross-Validation for the SVD (Bi-Cross-Validation)
- bda
- Density Estimation for Grouped Data
- bde
- Bounded Density Estimation
- BDgraph
- Bayesian Structure Learning in Graphical Models using Birth-Death MCMC
- bdlp
- A Package for Transparent Artificial Data Generation
- bdots
- Bootstrapped Differences of Time Series
- bdpopt
- Optimisation of Bayesian Decision Problems
- bdpv
- Inference and design for predictive values in binary diagnostic tests
- BDR
- Big Data Ready
- bdrift
- Beta Drift Analysis
- bdscale
- Remove Weekends and Holidays from ggplot2 Axes
- bdsmatrix
- Routines for Block Diagonal Symmetric matrices
- bdsmatrix
- Routines for Block Diagonal Symmetric matrices
- bdvis
- Biodiversity Data Visualizations
- BDWreg
- Bayesian Inference for Discrete Weibull Regression
- bdynsys
- Bayesian Dynamical System Model
- BEACH
- Biometric Exploratory Analysis Creation House
- beadarray
- Quality assessment and low-level analysis for Illumina BeadArray data
- beadarrayFilter
- Bead filtering for Illumina bead arrays
- beadarrayMSV
- Analysis of Illumina BeadArray SNP data including MSV markers
- beadarraySNP
- Normalization and reporting of Illumina SNP bead arrays
- BeadDataPackR
- Compression of Illumina BeadArray data
- beanplot
- Visualization via Beanplots (like Boxplot/Stripchart/Violin Plot)
- BEANSP
- Bayesian Estimate of Age-specific Nest Survival Probabilities
- beanz
- Bayesian Analysis of Heterogeneous Treatment Effect
- bea.R
- Bureau of Economic Analysis API
- BEAT
- BEAT - BS-Seq Epimutation Analysis Toolkit
- BEclear
- Correct for batch effects in DNA methylation data
- BEDASSLE
- Quantifies effects of geo/eco distance on genetic differentiation
- BEDMatrix
- Matrices Backed by Binary PED Files (PLINK)
- bedr
- Genomic Region Processing using Tools Such as BEDtools, BEDOPS and Tabix
- beepr
- Easily Play Notification Sounds on any Platform
- beeswarm
- The Bee Swarm Plot, an Alternative to Stripchart
- belex
- Download Historical Data from the Belgrade Stock Exchange
- benchden
- 28 benchmark densities from Berlinet/Devroye (1994)
- benchmark
- Benchmark Experiments Toolbox
- Benchmarking
- Benchmark and Frontier Analysis Using DEA and SFA
- benchmarkme
- Crowd Sourced System Benchmarks
- benchmarkmeData
- Data Set for the 'benchmarkme' Package
- benchr
- High Precise Measurement of R Expressions Execution Time
- benford.analysis
- Benford Analysis for Data Validation and Forensic Analytics
- BenfordTests
- Statistical Tests for Evaluating Conformity to Benford's Law
- bentcableAR
- Bent-Cable Regression for Independent Data or Autoregressive Time Series
- BEQI2
- Benthic Ecosystem Quality Index 2
- ber
- Batch Effects Removal
- Bergm
- Bayesian analysis for exponential random graph models
- berryFunctions
- Function Collection Related to Plotting and Hydrology
- bertin
- Bertin matrix display
- Bessel
- Bessel Functions Computations and Approximations
- Bessel
- Bessel -- Bessel Functions Computations and Approximations
- BEST
- Bayesian Estimation Supersedes the t-Test
- bestglm
- Best Subset GLM
- BetaBit
- Mini Games from Adventures of Beta and Bit
- betafam
- Detecting rare variants for quantitative traits using nuclear families
- betalink
- Beta-Diversity of Species Interactions
- betapart
- Partitioning Beta Diversity into Turnover and Nestedness Components
- betapart
- Partitioning beta diversity into turnover and nestedness components
- betaper
- Functions to incorporate taxonomic uncertainty on multivariate analyses of ecological data
- betareg
- Beta Regression
- betareg
- Beta Regression
- betas
- Standardized Beta Coefficients
- betategarch
- Simulation, Estimation and Forecasting of Beta-Skew-t-EGARCH Models
- bethel
- Bethel's algorithm.
- betr
- Identify differentially expressed genes in microarray time-course data
- BeviMed
- Bayesian Evaluation of Variant Involvement in Mendelian Disorders
- bezier
- Bezier Curve and Spline Toolkit
- bfa
- Bayesian Factor Analysis
- bfa
- Bayesian Factor Analysis
- bfast
- Breaks For Additive Season and Trend (BFAST)
- bfast
- Breaks For Additive Season and Trend
- bfork
- Basic Unix Process Control
- bfp
- Bayesian Fractional Polynomials
- bfp
- Bayesian Fractional Polynomials
- bgafun
- BGAfun A method to identify specifity determining residues in protein families
- BgeeDB
- Annotation and gene expression data retrieval from Bgee database
- bgeva
- Binary Generalized Extreme Value Additive Models
- bglm
- Bayesian Estimation in Generalized Linear Models
- BGLR
- Bayesian Generalized Linear Regression
- BGLR
- Bayesian Generalized Linear Regression
- BGLRutils
- Utilities for Bayesian Generalized Linear Regression
- bgmfiles
- Example BGM Files for the Atlantis Ecosystem Model
- BGmix
- Bayesian models for differential gene expression
- bgmm
- Gaussian Mixture Modeling Algorithms And The Belief-based Mixture Modeling
- BGPhazard
- Markov Beta and Gamma Processes for Modeling Hazard Rates
- BGSIMD
- Block Gibbs Sampler with Incomplete Multinomial Distribution
- bgsmtr
- Bayesian Group Sparse Multi-Task Regression
- bgx
- Bayesian Gene eXpression
- BH
- Boost C++ Header Files
- BH
- The Boost C++ Libraries
- Bhat
- General likelihood exploration
- BHC
- Bayesian Hierarchical Clustering
- BHH2
- Useful Functions for Box, Hunter and Hunter II
- bhm
- Biomarker Threshold Models
- biasbetareg
- Bias correction of the parameter estimates of the beta regression model
- BiasedUrn
- Biased Urn Model Distributions
- bib2df
- Parse a BibTeX File to a Tibble
- BiBitR
- R Wrapper for Java Implementation of BiBit
- bibliometrix
- Bibliometric and Co-Citation Analysis Tool
- bibliospec
- Reading Mass Spectrometric Search Results
- bibtex
- bibtex parser
- bibtex
- bibtex parser
- BicARE
- Biclustering Analysis and Results Exploration
- biclust
- BiCluster Algorithms
- biclust
- BiCluster Algorithms
- biclustRank
- Ranking of biclusters using another data source
- BiDimRegression
- Calculates the bidimensional regression between two 2D configurations
- bifactorial
- Inferences for bi- and trifactorial trial designs
- bife
- Binary Choice Models with Fixed Effects
- BIFIEsurvey
- Tools for Survey Statistics in Educational Assessment
- bigalgebra
- BLAS routines for native R matrices and big.matrix objects.
- bigalgebra
- BLAS routines for native R matrices and big.matrix objects.
- biganalytics
- A library of utilities for big.matrix objects of package bigmemory.
- biganalytics
- Utilities for 'big.matrix' Objects from Package 'bigmemory'
- bigdata
- Big Data Analytics
- BIGDAWG
- Case-Control Analysis of Multi-Allelic Loci
- bigFastlm
- Fast Linear Models for Objects from the 'bigmemory' Package
- bigGP
- Distributed Gaussian Process Calculations
- BiGGR
- Constraint based modeling in R using metabolic reconstruction databases
- biglars
- Scalable Least-Angle Regression and Lasso
- biglasso
- Big Lasso: Extending Lasso Model Fitting to Big Data in R
- biglm
- bounded memory linear and generalized linear models
- biglme
- Procedure for doing inference of one-way Linear Mixed Effects models.
- bigmelon
- Illumina methylation array analysis for large experiments
- bigmemory
- Manage massive matrices with shared memory and memory-mapped files
- bigmemory
- Manage Massive Matrices with Shared Memory and Memory-Mapped Files
- bigmemoryExtras
- An extension of the bigmemory package with added safety, convenience, and a factor class
- bigmemory.sri
- A shared resource interface for Bigmemory Project packages
- bigmemory.sri
- A shared resource interface for Bigmemory Project packages
- bigml
- Bindings for the BigML API
- bigmlogit
- Estimation of models with limited dependent variables
- bigpca
- PCA, Transpose and Multicore Functionality for 'big.matrix' Objects
- bigQueryR
- Interface with Google BigQuery with Shiny Compatibility
- BigQuic
- Big Quadratic Inverse Covariance Estimation
- bigReg
- Generalized Linear Models (GLM) for Large Data Sets
- bigrquery
- An Interface to Google's 'BigQuery' 'API'
- bigRR
- Generalized Ridge Regression (with special advantage for p >> n cases)
- bigRR
- Generalized Ridge Regression (with special advantage for p >> n cases)
- BigSEM
- Constructing Large Systems of Structural Equations
- bigsplines
- Smoothing Splines for Large Samples
- bigstep
- Stepwise Selection for Large Data Sets
- bigtabulate
- Table, Apply, and Split Functionality for Matrix and 'big.matrix' Objects
- bigtcr
- Nonparametric Analysis of Bivariate Gap Time with Competing Risks
- BigTSP
- Top Scoring Pair based methods for classification
- BigVAR
- Dimension Reduction Methods for Multivariate Time Series
- bikeshare14
- Bay Area Bike Share Trips in 2014
- bild
- BInary Longitudinal Data
- bimetallic
- Power for SNP analyses using silver standard cases
- bimixt
- Estimates Mixture Models for Case-Control Data
- BimodalIndex
- The Bimodality Index
- Binarize
- Binarization of One-Dimensional Data
- BinaryEMVS
- Variable Selection for Binary Data Using the EM Algorithm
- BinaryEPPM
- Mean and Variance Modeling of Binary Data
- binaryLogic
- Binary Logic
- binda
- Multi-Class Discriminant Analysis using Binary Predictors
- bindata
- Generation of Artificial Binary Data
- bindr
- Parametrized Active Bindings
- binequality
- Methods for Analyzing Binned Income Data
- binford
- Binford's Hunter-Gatherer Data
- bingat
- Binary Graph Analysis Tools
- binGroup
- Evaluation and experimental design for binomial group testing
- binhf
- Haar-Fisz functions for binomial data
- binMto
- Asymptotic simultaneous confidence intervals for many-to-one comparisons of proportions
- BinNonNor
- Data Generation with Binary and Continuous Non-Normal Components
- BinNor
- Simultaneous Generation of Multivariate Binary and Normal Variates
- binom
- Binomial Confidence Intervals For Several Parameterizations
- binom
- Binomial Confidence Intervals For Several Parameterizations
- binomen
- 'Taxonomic' Specification and Parsing Methods
- binomialcftp
- Generates binomial random numbers via the coupling from the past algorithm
- binomlogit
- Efficient MCMC for Binomial Logit Models
- binomSamSize
- Confidence Intervals and Sample Size Determination for a Binomial Proportion under Simple Random Sampling and Pooled Sampling
- binomTools
- Performing diagnostics on binomial regression models
- binomTools
- Performing diagnostics on binomial regression models
- BinOrdNonNor
- Concurrent Generation of Binary, Ordinal and Continuous Data
- binr
- Cut Numeric Values into Evenly Distributed Groups
- binseqtest
- Exact Binary Sequential Designs and Analysis
- binsmooth
- Generate PDFs and CDFs from Binned Data
- binst
- Data Preprocessing, Binning for Classification and Regression
- bio3d
- Biological Structure Analysis
- bioassayR
- Cross-target analysis of small molecule bioactivity
- Biobase
- Biobase: Base functions for Bioconductor
- biobroom
- Turn Bioconductor objects into tidy data frames
- BioCalc
- Bioclim Variables Calculator
- bioCancer
- Interactive Multi-Omics Cancers Data Visualization and Analysis
- BiocCaseStudies
- BiocCaseStudies: Support for the Case Studies Monograph
- BiocCheck
- Bioconductor-specific package checks
- BiocGenerics
- S4 generic functions for Bioconductor
- biocGraph
- Graph examples and use cases in Bioinformatics
- BiocInstaller
- Install/Update Bioconductor, CRAN, and github Packages
- Biocomb
- Feature Selection and Classification with the Embedded Validation Procedures for Biomedical Data Analysis
- BiocParallel
- Bioconductor facilities for parallel evaluation
- BioCro
- Simulation of Biomass Crops
- BiocStyle
- Standard styles for vignettes and other Bioconductor documents
- biocViews
- Categorized views of R package repositories
- BiocWorkflowTools
- Tools to aid the development of Bioconductor Workflow packages
- Biodem
- Biodemography Functions
- bioDist
- Different distance measures
- BiodiversityR
- Package for Community Ecology and Suitability Analysis
- BIOdry
- Multilevel Modeling of Dendroclimatical Fluctuations
- BioFTF
- Biodiversity Assessment Using Functional Tools
- biogas
- Process Biogas Data and Predict Biogas Production
- biogeo
- Point Data Quality Assessment and Coordinate Conversion
- BioGeoBEARS
- BioGeography with Bayesian (and Likelihood) Evolutionary Analysis in R Scripts
- biogram
- N-Gram Analysis of Biological Sequences
- Biograph
- Explore Life Histories
- bioimagetools
- Some Tools for Imaging
- bioinactivation
- Simulation of Dynamic Microbial Inactivation
- bio.infer
- Predict environmental conditions from biological observations
- biom
- An interface package (beta) for the BIOM file format.
- BioMark
- Find Biomarkers in Two-Class Discrimination Problems
- biomaRt
- Interface to BioMart databases (e.g. Ensembl, COSMIC, Wormbase and Gramene)
- biomartr
- Genomic Data Retrieval with R
- BIOMASS
- Estimating Above-Ground Biomass and Its Uncertainty in Tropical Forests
- biomformat
- An interface package for the BIOM file format
- BIOMOD
- Ensemble platform for species distribution modeling
- biomod2
- Ensemble Platform for Species Distribution Modeling
- biomod2
- Ensemble Platform for Species Distribution Modeling
- BIOM.utils
- Utilities for the BIOM (Biological Observation Matrix) Format
- BioMVCClass
- Model-View-Controller (MVC) Classes That Use Biobase
- biomvRCNS
- Copy Number study and Segmentation for multivariate biological data
- BioNet
- Routines for the functional analysis of biological networks
- bionetdata
- Biological and chemical data networks
- BioPET
- Biomarker Prognostic Enrichment Tool
- BioPhysConnectoR
- BioPhysConnectoR
- bioplots
- Visualization of Overlapping Results with Heatmap
- bioPN
- Simulation of deterministic and stochastic biochemical reaction networks using Petri Nets
- BioQC
- Detect tissue heterogeneity in expression profiles with gene sets
- biorxivr
- Search and Download Papers from the bioRxiv Preprint Server
- bios2mds
- From BIOlogical Sequences to MultiDimensional Scaling
- BioSeqClass
- Classification for Biological Sequences
- biosignalEMG
- Tools for Electromyogram Signals (EMG) Analysis
- biosigner
- Signature discovery from omics data
- BioStatR
- Initiation Ã la Statistique avec R
- biostatUZH
- Misc Tools of the Department of Biostatistics, EBPI, University of Zurich
- Biostrings
- String objects representing biological sequences, and matching algorithms
- biosvd
- Package for high-throughput data processing, outlier detection, noise removal and dynamic modeling
- biotic
- Calculation of Freshwater Biotic Indices
- biotools
- Tools for Biometry and Applied Statistics in Agricultural Science
- biovizBase
- Basic graphic utilities for visualization of genomic data.
- bipartite
- Visualising Bipartite Networks and Calculating Some (Ecological) Indices
- biplotbootGUI
- Bootstrap on Classical Biplots and Clustering Disjoint Biplot
- BiplotGUI
- Interactive Biplots in R
- BiplotGUI
- Interactive Biplots in R
- BIPOD
- BIPOD (Bayesian Inference for Partially Observed diffusions)
- birdnik
- Connector for the Wordnik API
- birdring
- Methods to Analyse Ring Re-Encounter Data
- BiRewire
- High-performing routines for the randomization of a bipartite graph (or a binary event matrix), undirected and directed signed graph preserving degree distribution (or marginal totals)
- birk
- MA Birk's Functions
- birta
- Bayesian Inference of Regulation of Transcriptional Activity
- birte
- Bayesian Inference of Regulatory Influence on Expression (biRte)
- bisectr
- Tools to find bad commits with git bisect
- BiSEp
- Toolkit to Identify Candidate Synthetic Lethality
- BiSeq
- Processing and analyzing bisulfite sequencing data
- bisoreg
- Bayesian Isotonic Regression with Bernstein Polynomials
- bit
- A class for vectors of 1-bit booleans
- bit
- A Class for Vectors of 1-Bit Booleans
- bit64
- A S3 Class for Vectors of 64bit Integers
- bit64
- A S3 Class for Vectors of 64bit Integers
- bitops
- Bitwise Operations
- BiTrinA
- Binarization and Trinarization of One-Dimensional Data
- bitrugs
- Bayesian Inference of Transmission Routes Using Genome Sequences
- BitSeq
- Transcript expression inference and differential expression analysis for RNA-seq data
- biVar
- Bias-Variance Analysis of the Misclassification Rate
- BivarP
- Estimating the Parameters of Some Bivariate Distributions
- bivarRIpower
- Sample size calculations for bivariate longitudinal data
- BivUnifBin
- Generation of Bivariate Uniform Data and Its Relation to Bivariate Binary Data
- biwavelet
- Conduct Univariate and Bivariate Wavelet Analyses
- biwavelet
- Conduct univariate and bivariate wavelet analyses
- biwt
- Functions to compute the biweight mean vector and covariance & correlation matrices
- bizdays
- Business Days Calculations and Utilities
- bkmr
- Bayesian Kernel Machine Regression
- BKPC
- Bayesian Kernel Projection Classifier
- blackbox
- Black Box Optimization and Exploration of Parameter Space
- BlakerCI
- Blaker's Binomial Confidence Limits
- BlandAltmanLeh
- Plots (Slightly Extended) Bland-Altman Plots
- blatr
- Send Emails Using 'Blat' for Windows
- Blaunet
- Calculate and Analyze Blau Status for Measuring Social Distance
- blavaan
- Bayesian Latent Variable Analysis
- BLCOP
- Black-Litterman and Copula Opinion Pooling Frameworks
- BLCOP
- Black-Litterman and copula-opinion pooling frameworks
- blendedLink
- A New Link Function that Blends Two Specified Link Functions
- blender
- Analyze biotic homogenization of landscapes
- blighty
- United Kingdom coastlines
- blima
- Package for the preprocessing and analysis of the Illumina microarrays on the detector (bead) level.
- blkbox
- Data Exploration with Multiple Machine Learning Algorithms
- blkergm
- Fitting block ERGM given the block structure on social networks
- blm
- Binomial linear and linear-expit regression
- blme
- Bayesian Linear Mixed-Effects Models
- blmeco
- Data Files and Functions Accompanying the Book "Bayesian Data Analysis in Ecology using R, BUGS and Stan"
- blmr
- Broken Line Model Regression
- blockcluster
- Coclustering Package for Binary, Categorical, Contingency and Continuous Data-Sets
- blockDemac
- parallel DEMC with several parameter blocks
- blockmatrix
- blockmatrix: Tools to solve algebraic systems with partitioned matrices
- BlockMessage
- Creates strings that show a text message in 8 by 8 block letters
- blockmodeling
- An R package for Generalized and classical blockmodeling of valued networks
- blockmodeling
- An R package for generalized and classical blockmodeling of valued networks
- blockmodels
- Latent and Stochastic Block Model Estimation by a 'V-EM' Algorithm
- blockra
- Block Rearrangement Algorithm
- blockrand
- Randomization for block random clinical trials
- blockrand
- Randomization for block random clinical trials
- blocksdesign
- Nested and Crossed Block Designs for Unstructured Treatment Sets
- blockseg
- Two Dimensional Change-Points Detection
- blockTools
- Block, Assign, and Diagnose Potential Interference in Randomized Experiments
- Blossom
- Statistical Comparisons with Distance-Function Based Permutation Tests
- blotter
- Tools for Transaction-Oriented Trading Systems Development
- BLR
- Bayesian Linear Regression
- BLR
- Bayesian Linear Regression
- blsAPI
- Request Data from the U.S. Bureau of Labor Statistics API
- blscrapeR
- An API Wrapper for the Bureau of Labor Statistics (BLS)
- blupsurv
- Recurrent events with BLUPs
- BMA
- Bayesian Model Averaging
- bmd
- Benchmark dose analysis for dose-response data
- bmem
- Mediation analysis with missing data using bootstrap
- bmem
- Mediation analysis with missing data using bootstrap
- bmeta
- Bayesian Meta-Analysis and Meta-Regression
- BMhyd
- PCM for Hybridization
- Bmix
- Bayesian Sampling for Stick-Breaking Mixtures
- bmk
- MCMC diagnostics package
- bmlm
- Bayesian Multilevel Mediation
- bmmix
- Bayesian multinomial mixture
- BMN
- The pseudo-likelihood method for pairwise binary markov networks
- bmp
- Read Windows Bitmap (BMP) images
- bmrm
- Bundle Methods for Regularized Risk Minimization Package
- BMRV
- Bayesian Models for Rare Variant Association Analysis
- BMRV
- Bayesian Models for Rare Variant Association Analysis
- BMS
- Bayesian Model Averaging Library
- BNDataGenerator
- Data Generator based on Bayesian Network Model
- bnlearn
- Bayesian Network Structure Learning, Parameter Learning and Inference
- bnnSurvival
- Bagged k-Nearest Neighbors Survival Prediction
- bnormnlr
- Bayesian Estimation for Normal Heteroscedastic Nonlinear Regression Models
- BNPdensity
- Ferguson-Klass Type Algorithm for Posterior Normalized Random Measures
- BNPMIXcluster
- Bayesian Nonparametric Model for Clustering with Mixed Scale Variables
- bnpmr
- Bayesian monotonic nonparametric regression
- BNPTSclust
- A Bayesian Nonparametric Algorithm for Time Series Clustering
- BNSP
- Bayesian Non- and Semi-Parametric Model Fitting
- bnspatial
- Spatial Implementation of Bayesian Networks and Mapping
- bnstruct
- Bayesian Network Structure Learning from Data with Missing Values
- boa
- Bayesian Output Analysis Program (BOA) for MCMC
- BoardGames
- Board Games and Tools for Building Board Games
- bodenmiller
- Profilling of Peripheral Blood Mononuclear Cells using CyTOF
- BOG
- Bacterium and Virus Analysis of Orthologous Groups (BOG) is a Package for Identifying Differentially Regulated Genes in the Light of Gene Functions
- boilerpipeR
- Interface to the boilerpipe Java library by Christian Kohlschutter (http://code.google.com/p/boilerpipe/)
- boilerpipeR
- Interface to the Boilerpipe Java Library
- BOIN
- Bayesian Optimal INterval (BOIN) Design for Single-Agent and Drug- Combination Phase I Clinical Trials
- bold
- Interface to Bold Systems 'API'
- Bolstad
- Functions for Elementary Bayesian Inference
- Bolstad2
- Bolstad functions
- bomDataRipper
- BOM data getter
- BonEV
- An Improved Multiple Testing Procedure for Controlling False Discovery Rates
- bookdown
- Authoring Books and Technical Documents with R Markdown
- boolean3
- Boolean Binary Response Models
- BoolNet
- Construction, Simulation and Analysis of Boolean Networks
- Boom
- Bayesian Object Oriented Modeling
- BoomSpikeSlab
- MCMC for Spike and Slab Regression
- BoostHeaders
- The Boost C++ Libraries
- boostmtree
- Boosted Multivariate Trees for Longitudinal Data
- boostr
- A modular framework to bag or boost any estimation procedure.
- boostSeq
- Optimized GWAS cohort subset selection for resequencing studies
- boot
- Bootstrap Functions (Originally by Angelo Canty for S)
- bootBCa
- Function to find nonparametric BCa intervals
- bootES
- Bootstrap Effect Sizes
- bootfs
- Derive Robust Feature Sets for Two or Multiclass Classification Problems
- bootLR
- Bootstrapped Confidence Intervals for (Negative) Likelihood Ratio Tests
- BootMRMR
- Bootstrap-MRMR Technique for Informative Gene Selection
- bootnet
- Bootstrap Methods for Various Network Estimation Routines
- BootPR
- Bootstrap Prediction Intervals and Bias-Corrected Forecasting
- bootRes
- Bootstrapped Response and Correlation Functions
- bootruin
- A bootstrap test for the probability of ruin in the classical risk process
- bootspecdens
- Testing equality of spectral densities
- bootsPLS
- Bootstrap Subsamplings of Sparse Partial Least Squares - Discriminant Analysis for Classification and Signature Identification
- bootStepAIC
- Bootstrap stepAIC
- bootstrap
- Functions for the Book "An Introduction to the Bootstrap"
- bootSVD
- Fast, Exact Bootstrap Principal Component Analysis for High Dimensional Data
- bootTimeInference
- Robust Performance Hypothesis Testing with the Sharpe Ratio
- boottol
- Bootstrap Tolerance Levels for Credit Scoring Validation Statistics
- BootWPTOS
- Test Stationarity using Bootstrap Wavelet Packet Tests
- boral
- Bayesian Ordination and Regression AnaLysis
- Boruta
- Wrapper Algorithm for All Relevant Feature Selection
- BOS
- Model-based clustering of multivariate ordinal data relying on a stochastic binary search algorithm
- BoSSA
- a Bunch of Structure and Sequence Analysis
- bounds
- Bounds for causal and sufficient-cause interactions
- boussinesq
- Analytic Solutions for (ground-water) Boussinesq Equation
- boxoffice
- Downloads Box Office Information for Given Dates (How Much Each Movie Earned in Theaters)
- boxplotdbl
- Double Box Plot for Two-Axes Correlation
- boxr
- Interface for the 'Box.com API'
- bpa
- Basic Pattern Analysis
- bpca
- Biplot of Multivariate Data Based on Principal Components Analysis
- bpcp
- Beta Product Confidence Procedure for Right Censored Data
- bPeaks
- bPeaks: an intuitive peak-calling strategy to detect transcription factor binding sites from ChIP-seq data in small eukaryotic genomes
- BPEC
- Bayesian Phylogeographic and Ecological Clustering
- bpkde
- Back-Projected Kernel Density Estimation
- bpkde
- Back-Projected Kernel Density Estimation
- bpm
- Basic functions for panel data analysis
- BPRMeth
- Model higher-order methylation profiles
- bptwin
- Cumulative incidence models for twin data
- bqtl
- Bayesian QTL Mapping Toolkit
- BradleyTerry2
- Bradley-Terry Models
- braidReports
- Visualize Combined Action Response Surfaces and Report BRAID Analyses
- braidrm
- Fitting Dose Response with the BRAID Combined Action Model
- BrailleR
- Improved Access for Blind Users
- BRAIN
- Baffling Recursive Algorithm for Isotope distributioN calculations
- brainGraph
- Graph Theory Analysis of Brain MRI Data
- brainR
- Helper functions to misc3d and rgl packages for brain imaging
- BrainStars
- query gene expression data and plots from BrainStars (B*)
- brainwaver
- Basic wavelet analysis of multivariate time series with a visualisation and parametrisation using graph theory.
- Branching
- Simulation and Estimation for Branching Processes
- braQCA
- Bootstrapped Robustness Assessment for Qualitative Comparative Analysis
- brea
- Bayesian Recurrent Event Analysis
- breakage
- SICM pipette tip geometry estimation
- breakaway
- Species Richness Estimation and Modeling
- breakpoint
- An R Package for Multiple Break-Point Detection via the Cross-Entropy Method
- breakpointError
- Breakpoint detection error
- bReeze
- Functions for wind resource assessment
- brew
- Templating Framework for Report Generation
- brew
- Templating Framework for Report Generation
- brewdata
- Extracting Usable Data from the Grad Cafe Results Search
- brglm
- Bias reduction in binomial-response generalized linear models.
- brglm
- Bias reduction in binomial-response generalized linear models.
- bride
- Brier score decomposition of probabilistic forecasts for binary events
- bride
- Brier score decomposition of probabilistic forecasts for binary events
- bridge
- Bayesian Robust Inference for Differential Gene Expression
- BridgeDbR
- Code for using BridgeDb identifier mapping framework from within R
- bridgedist
- An Implementation of the Bridge Distribution with Logit-Link as in Wang and Louis (2003)
- bridger2
- Genome-Wide RNA Degradation Analysis Using BRIC-Seq Data
- briskaR
- Biological Risk Assessment
- brm
- Binary Regression Model
- brms
- Bayesian Regression Models using Stan
- brnn
- Bayesian Regularization for Feed-Forward Neural Networks
- Brobdingnag
- Very large numbers in R
- broman
- Karl Broman's R Code
- broom
- Convert Statistical Analysis Objects into Tidy Data Frames
- brotli
- A Compression Format Optimized for the Web
- BrowserViz
- BrowserViz: interactive R/browser graphics using websockets and JSON
- BrowserVizDemo
- BrowserVizDemo: How to subclass BrowserViz
- brr
- Bayesian Inference on the Ratio of Two Poisson Rates
- brranching
- Fetch 'Phylogenies' from Many Sources
- BRugs
- Interface to the 'OpenBUGS' MCMC Software
- BSagri
- Statistical methods for safety assessment in agricultural field trials
- bsam
- Bayesian State-Space Models for Animal Movement
- BSDA
- Basic Statistics and Data Analysis
- bsearchtools
- Binary Search Tools
- BSgenome
- Infrastructure for Biostrings-based genome data packages and support for efficient SNP representation
- BSGS
- Bayesian Sparse Group Selection
- BSGW
- Bayesian Survival Model with Lasso Shrinkage Using Generalized Weibull Regression
- bshazard
- Nonparametric Smoothing of the Hazard Function
- BsMD
- Bayes Screening and Model Discrimination
- bspec
- Bayesian Spectral Inference
- bspmma
- bspmma: Bayesian Semiparametric Models for Meta-Analysis
- BSquare
- Bayesian Simultaneous Quantile Regression
- BSSasymp
- Asymptotic Covariance Matrices of Some BSS Mixing and Unmixing Matrix Estimates
- bsseq
- Analyze, manage and store bisulfite sequencing data
- bssn
- Birnbaum-Saunders Model Based on Skew-Normal Distribution
- bst
- Gradient Boosting
- bsts
- Bayesian Structural Time Series
- btb
- Beyond the Border
- btergm
- Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood
- btergm
- Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood
- btf
- Estimates univariate function via Bayesian trend filtering
- BTLLasso
- Modelling Heterogeneity in Paired Comparison Data
- BTR
- Training and Analysing Asynchronous Boolean Models
- BTSPAS
- Bayesian Time-Strat. Population Analysis
- btutils
- Utilities for Simple Back Testing of Trading Strategies
- BTYD
- Implementing Buy 'Til You Die Models
- BubbleTree
- BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality in somatic mosaicism using next generation sequencing data
- BufferedMatrix
- A matrix data storage object held in temporary files
- BufferedMatrixMethods
- Microarray Data related methods that utlize BufferedMatrix objects
- BUGSExamples
- Collection of BUGS examples
- bujar
- Buckley-James Regression for Survival Data with High-Dimensional Covariates
- bumphunter
- Bump Hunter
- bunchr
- Analyze Bunching in a Kink or Notch Setting
- bundesligR
- All Final Tables of the Bundesliga
- burnr
- Advanced Fire History Analysis in R
- BurStFin
- Burns Statistics Financial
- BurStMisc
- Burns Statistics Miscellaneous
- bursts
- Markov model for bursty behavior in streams
- BUS
- Gene network reconstruction
- BuyseTest
- Generalized Pairwise Comparisons
- bvarsv
- Bayesian Analysis of a Vector Autoregressive Model with Stochastic Volatility and Time-Varying Parameters
- bvenn
- A Simple alternative to proportional Venn diagrams
- bvls
- The Stark-Parker algorithm for bounded-variable least squares
- bvpSolve
- Solvers for Boundary Value Problems of Differential Equations
- bvpSolve
- Solvers for Boundary Value Problems of Differential Equations
- BVS
- Bayesian Variant Selection: Bayesian Model Uncertainty Techniques for Genetic Association Studies
- bvsflex
- Integrative Bayesian variable selection with flexible priors
- bWGR
- Bagging Whole-Genome Regression
- BWStest
- Baumgartner Weiss Schindler Test of Equal Distributions
- bytescircle
- Statistics About Bytes Contained in a File as a Circle Plot
- c060
- Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models
- c060
- Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models
- c3net
- Infering large-scale gene networks with C3NET
- c3net
- Infering large-scale gene networks with C3NET
- C50
- C5.0 Decision Trees and Rule-Based Models
- C50
- C5.0 Decision Trees and Rule-Based Models
- ca
- Simple, Multiple and Joint Correspondence Analysis
- ca
- Simple, Multiple and Joint Correspondence Analysis
- cablecuttr
- A CanIStream.It API Wrapper
- cabootcrs
- Bootstrap Confidence Regions for Correspondence Analysis.
- cacIRT
- Classification Accuracy and Consistency under Item Response Theory
- CaDENCE
- Conditional Density Estimation Network Construction and Evaluation
- CADFtest
- This package performs the CADF unit root test proposed in Hansen (1995).
- CADStat
- Provides a GUI to Several Statistical Methods
- CAFE
- Chromosmal Aberrations Finder in Expression data
- CAGEr
- Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
- cAIC4
- Conditional Akaike information criterion for lme4
- Cairo
- R graphics device using cairo graphics library for creating high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG, PostScript) and display (X11 and Win32) output
- cairoDevice
- Embeddable Cairo Graphics Device Driver
- calACS
- Calculations for All Common Subsequences
- Calculator.LR.FNs
- Calculator for LR Fuzzy Numbers
- CALF
- Coarse Approximation Linear Function
- CALIB
- Calibration model for estimating absolute expression levels from microarray data
- CALIBERcodelists
- Generate ICD10, Read and OPCS codelists
- CALIBERdatamanage
- Data Management Tools for CALIBER Datasets
- CALIBERdrugdose
- Extract drug dose from unstructured dosage text
- CALIBERfma
- R interface to the Freetext Matching Algorithm
- CALIBERrfimpute
- Multiple imputation using MICE and Random Forest
- CALIBERrfimpute
- Multiple imputation using MICE and Random Forest
- calibFit
- Statistical models and tools for assay calibration
- calibrar
- Automated Parameter Estimation for Complex (Ecological) Models
- calibrate
- Calibration of Scatterplot and Biplot Axes
- CalibrateSSB
- Weighting and Estimation for Panel Data with Non-Response
- calibrator
- Bayesian calibration of complex computer codes
- callr
- Call R from R
- calmate
- Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation
- CAM
- Causal Additive Model (CAM)
- CAMAN
- Finite Mixture Models and Meta-Analysis Tools - Based on C.A.MAN
- CAMAN
- Finite Mixture Models and Meta-Analysis Tools - Based on C.A.MAN
- camel
- Calibrated Machine Learning
- CAMERA
- Collection of annotation related methods for mass spectrometry data
- camsRad
- Client for CAMS Radiation Service
- camtrapR
- Camera Trap Data Management and Preparation of Occupancy and Spatial Capture-Recapture Analyses
- canceR
- A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC.
- cancerclass
- Development and validation of diagnostic tests from high-dimensional molecular data
- cancerGI
- Analyses of Cancer Gene Interaction
- CancerInSilico
- An R interface for computational modeling of tumor progression
- CancerMutationAnalysis
- Cancer mutation analysis
- CancerSubtypes
- Cancer subtypes identification, validation and visualization based on genomic data
- cancerTiming
- Estimation of Temporal Ordering of Cancer Abnormalities
- CAnD
- Perform Chromosomal Ancestry Differences (CAnD) Analyses
- CandidateBacon
- Provides a measure of the average connectedness among as set of candidate genes and a network-specific distribution of the connectedness of random gene pairs for an arbitrary network of pair wise interactions.
- candisc
- Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis
- candisc
- Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis
- candlesticks
- Candlestick Pattern Recognition
- Canopy
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing
- CANSIM2R
- Directly Extracts Complete CANSIM Data Tables
- CANS.works
- Import, manipulate and analyze data from the Massachusetts CANS tool
- caOmicsV
- Visualization of multi-dimentional cancer genomics data
- cape
- Combined Analysis of Pleiotropy and Epistasis
- caper
- Comparative Analyses of Phylogenetics and Evolution in R
- capm
- Companion Animal Population Management
- captioner
- Numbers Figures and Creates Simple Captions
- captr
- Client for the Captricity API
- capushe
- CAlibrating Penalities Using Slope HEuristics
- capwire
- Estimates population size from non-invasive sampling
- car
- Companion to Applied Regression
- car
- Companion to Applied Regression
- CARBayes
- Spatial Generalised Linear Mixed Models for Areal Unit Data
- CARBayesdata
- Data Used in the Vignettes Accompanying the CARBayes and CARBayesST Packages
- CARBayesST
- Spatio-Temporal Generalised Linear Mixed Models for Areal Unit Data
- carcass
- Estimation of the Number of Fatalities from Carcass Searches
- cardidates
- Identification of Cardinal Dates in Ecological Time Series
- cardidates
- Identification of Cardinal Dates in Ecological Time Series
- Cardinal
- A mass spectrometry imaging toolbox for statistical analysis
- cardioModel
- Cardiovascular Safety Exposure-Response Modeling in Early-Phase Clinical Studies
- care
- High-Dimensional Regression and CAR Score Variable Selection
- CARE1
- Statistical package for population size estimation in capture-recapture models.
- caret
- Classification and Regression Training
- caret
- Classification and Regression Training
- caretEnsemble
- Ensembles of Caret Models
- caretLaTeX
- LaTeX Classes for the caret Package
- caribou
- Estimation of caribou abundance based on large scale aggregations monitored by radio telemetry
- CarletonStats
- Functions for Statistics Classes at Carleton College
- CARLIT
- Ecological Quality Ratios Calculation and Plot
- caroline
- A Collection of Database, Data Structure, Visualization, and Utility Functions for R
- carpenter
- Build Common Tables of Summary Statistics for Reports
- caRpools
- CRISPR AnalyzeR for Pooled CRISPR Screens
- CARrampsOcl
- Reparameterized and marginalized posterior sampling for conditional autoregressive models, OpenCL implementation
- cartogram
- Create Cartograms with R
- cartography
- Thematic Cartography
- carx
- Censored Autoregressive Model with Exogenous Covariates
- caschrono
- Sries Temporelles Avec R
- caseMatch
- Identify Similar Cases for Qualitative Case Studies
- casper
- Characterization of Alternative Splicing based on Paired-End Reads
- caspr
- Cellular Automata for Spatial Pressure in R
- cat
- Analysis of categorical-variable datasets with missing values
- catdap
- Categorical Data Analysis Program Package
- catdata
- Categorical Data
- CatDyn
- Fishery Stock Assessment by Generalized Depletion Models
- cate
- High Dimensional Factor Analysis and Confounder Adjusted Testing and Estimation
- Category
- Category Analysis
- categoryCompare
- Meta-analysis of high-throughput experiments using feature annotations
- catenary
- Fits a Catenary to Given Points
- CatEncoders
- Encoders for Categorical Variables
- CateSelection
- Categorical Variable Selection Methods
- cati
- Community Assembly by Traits: Individuals and Beyond
- catIrt
- An R Package for Simulating IRT-Based Computerized Adaptive Tests
- catlearn
- Formal Modeling for Psychology
- catlearn
- Formal Modeling for Psychology
- catnet
- Categorical Bayesian Network Inference
- caTools
- Tools: moving window statistics, GIF, Base64, ROC AUC, etc.
- catR
- Generation of IRT Response Patterns under Computerized Adaptive Testing
- catspec
- Special models for categorical variables
- causaldrf
- Tools for Estimating Causal Dose Response Functions
- causaleffect
- Deriving Expressions of Joint Interventional Distributions and Transport Formulas in Causal Models
- CausalFX
- Methods for Estimating Causal Effects from Observational Data
- CausalGAM
- Estimation of Causal Effects with Generalized Additive Models
- CausalR
- Causal Reasoning Methods
- causalsens
- Selection Bias Approach to Sensitivity Analysis for Causal Effects
- Causata
- Analysis utilities for binary classification and Causata users.
- CAvariants
- Correspondence Analysis Variants
- cba
- Clustering for Business Analytics
- cbmisc
- Claudia's collection of miscellaneous functions
- cbmodels
- Collection of "combined" models: PCA-LDA, PLS-LDA, etc.
- CBPS
- Covariate Balancing Propensity Score
- cbsodataR
- Statistics Netherlands (CBS) Open Data API Client
- CCA
- Canonical correlation analysis
- CCAGFA
- Bayesian Canonical Correlation Analysis and Group Factor Analysis
- ccaPP
- (Robust) Canonical Correlation Analysis via Projection Pursuit
- cccd
- Class Cover Catch Digraphs
- ccChooser
- Developing a core collections
- cccp
- Cone Constrained Convex Problems
- cccp
- Cone Constrained Convex Problems
- cccrm
- Concordance Correlation Coefficient for Repeated (and Non-Repeated) Measures
- ccda
- Combined Cluster and Discriminant Analysis
- ccdrAlgorithm
- CCDr Algorithm for Learning Sparse Gaussian Bayesian Networks
- ccgarch
- Conditional Correlation GARCH models
- ccgarch2
- Conditional Correlation GARCH Models
- cchs
- Cox Model for Case-Cohort Data with Stratified Subcohort-Selection
- cclust
- Convex Clustering Methods and Clustering Indexes
- CCM
- Correlation classification method (CCM)
- ccmap
- Combination Connectivity Mapping
- CCMnet
- Simulate Congruence Class Model for Networks
- CCP
- Significance Tests for Canonical Correlation Analysis (CCA)
- CCpop
- One and two locus GWAS of binary phenotype with case-control-population design
- CCPROMISE
- PROMISE analysis with Canonical Correlation for Two Forms of High Dimensional Genetic Data
- ccrepe
- ccrepe_and_nc.score
- CCTpack
- Cultural Consensus Theory applications to data
- cda
- Coupled-Dipole Approximation for Electromagnetic Scattering by Three-Dimensional Clusters of Sub-Wavelength Particles
- cdb
- Reading and Writing Constant DataBases
- cdb
- Reading and Writing Constant DataBases
- cdcfluview
- Retrieve U.S. Flu Season Data from the CDC FluView Portal
- cdcsis
- Conditional Distance Correlation and Its Related Feature Screening Method
- CDF.PSIdekick
- Evaluate Differentially Private Algorithms for Publishing Cumulative Distribution Functions
- cdfquantreg
- Quantile Regression for Random Variables on the Unit Interval
- CDFt
- Statistical downscaling through CDF-transform
- CDLasso
- Coordinate Descent Algorithms for Lasso Penalized L1, L2, and Logistic Regression
- cdlTools
- Tools to Download and Work with USDA Cropscape Data
- CDM
- Cognitive Diagnosis Modeling
- CDNmoney
- Components of Canadian Monetary and Credit Aggregates
- cdom
- R Functions to Model CDOM Spectra
- CDROM
- Phylogenetically Classifies Retention Mechanisms of Duplicate Genes from Gene Expression Data
- cds
- Constrained Dual Scaling for Detecting Response Styles
- cdtRefficient
- cdtRefficient
- cdtRggplot2
- cdtRggplot2
- cdtRintroduction
- cdtRintroduction
- cdtRmodelling
- cdtRmodelling
- cdtRprogramming
- cdtRprogramming
- CDVine
- Statistical Inference of C- And D-Vine Copulas
- CEC
- Cross-Entropy Clustering
- cec2005benchmark
- Benchmark for the CEC 2005 Special Session on Real-Parameter Optimization
- cec2013
- Benchmark functions for the Special Session and Competition on Real-Parameter Single Objective Optimization at CEC-2013
- CEGO
- Combinatorial Efficient Global Optimization
- celestial
- Collection of Common Astronomical Conversion Routines and Functions
- cellGrowth
- Fitting cell population growth models
- cellHTS
- Analysis of cell-based screens
- cellHTS2
- Analysis of cell-based screens - revised version of cellHTS
- cellity
- Quality Control for Single-Cell RNA-seq Data
- CellMapper
- Predict genes expressed selectively in specific cell types
- CellNOptR
- Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.
- cellranger
- Translate Spreadsheet Cell Ranges to Rows and Columns
- cellTree
- Inference and visualisation of Single-Cell RNA-seq data as a hierarchical tree structure
- CellularAutomaton
- One-Dimensional Cellular Automata
- cellVolumeDist
- Functions to fit cell volume distributions and thereby estimate cell growth rates and division times
- cellWise
- Analyzing Data with Cellwise Outliers
- cem
- Coarsened Exact Matching
- cems
- Conditional Expectation Manifolds
- CensMixReg
- Censored Linear Mixture Regression Models
- censNID
- censored NID samples
- censorcopula
- Estimate Parameter of Bivariate Copula
- censReg
- Censored Regression (Tobit) Models
- censReg
- Censored Regression (Tobit) Models
- CensRegMod
- Fits Normal and Student-t Censored Regression Model
- CensSpatial
- Censored Spatial Models
- censusGeography
- Changes United States Census Geographic Code into Name of Location
- censusr
- Collect Data from the Census API
- CENTIPEDE
- CENTIPEDE learns a DNaseI footprint of a transcription factor and predicts its binding sites
- cents
- Censored time series
- CEoptim
- Cross-Entropy R Package for Optimization
- CePa
- Centrality-based pathway enrichment
- CepLDA
- Discriminant Analysis of Time Series in the Presence of Within-Group Spectral Variability
- cepp
- Context Driven Exploratory Projection Pursuit
- CerioliOutlierDetection
- Outlier Detection Using the Iterated RMCD Method of Cerioli (2010)
- cernn
- Covariance Estimation Regularized by Nuclear Norm Penalties
- CexoR
- An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates
- CFAssay
- Statistical analysis for the Colony Formation Assay
- CFC
- Cause-Specific Framework for Competing-Risk Analysis
- CfEstimateQuantiles
- Estimate quantiles using any order Cornish-Fisher expansion
- cffdrs
- Canadian Forest Fire Danger Rating System
- cffdrs
- Canadian Forest Fire Danger Rating System
- CFL
- Compensatory Fuzzy Logic
- cg
- Compare Groups, Analytically and Graphically
- cgam
- Constrained Generalized Additive Model
- cgAUC
- Calculate AUC-type measure when gold standard is continuous and the corresponding optimal linear combination of variables with respect to it.
- cgdsr
- R-Based API for Accessing the MSKCC Cancer Genomics Data Server (CGDS)
- CGEN
- An R package for analysis of case-control studies in genetic epidemiology
- cgenpp
- Parallel genomic evaluations
- cggd
- Continuous Generalized Gradient Descent
- cgh
- Microarray CGH analysis using the Smith-Waterman algorithm
- CGHbase
- CGHbase: Base functions and classes for arrayCGH data analysis.
- CGHcall
- Calling aberrations for array CGH tumor profiles.
- cghFLasso
- Detecting hot spot on CGH array data with fused lasso regression.
- cghMCR
- Find chromosome regions showing common gains/losses
- CGHnormaliter
- Normalization of array CGH data with imbalanced aberrations.
- CGHregions
- Dimension Reduction for Array CGH Data with Minimal Information Loss.
- cghseg
- Segmentation methods for array CGH analysis
- cghseg
- Segmentation Methods for Array CGH Analysis
- cgmisc
- Various functions useful in computational genetics, e.g. GWAS.
- CGP
- Composite Gaussian process models
- cgwtools
- Miscellaneous Tools
- CHAID
- CHi-squared Automated Interaction Detection
- ChainLadder
- Statistical Methods and Models for Claims Reserving in General Insurance
- ChAMP
- Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
- changepoint
- Methods for Changepoint Detection
- changepoint.np
- Methods for Nonparametric Changepoint Detection
- ChangepointTesting
- Change Point Estimation for Clustered Signals
- ChannelAttribution
- Markov Model for the Online Multi-Channel Attribution Problem
- ChannelAttributionApp
- Shiny Web Application for the Multichannel Attribution Problem
- Chaos01
- 0-1 Test for Chaos
- ChaosGame
- Chaos Game
- ChargeTransport
- Charge Transfer Rates and Charge Carrier Mobilities
- charm
- Analysis of DNA methylation data from CHARM microarrays
- charmData
- An example dataset for use with the charm package
- CHAT
- Clonal Heterogeneity Analysis Tool
- CHCN
- Canadian Historical Climate Network
- cheb
- Discrete Linear Chebyshev Approximation
- chebpol
- Multivariate Chebyshev Interpolation
- CheckDigit
- Calculate and verify check digits
- checkmate
- Fast and Versatile Argument Checks
- checkpoint
- Install Packages from Snapshots on the Checkpoint Server for Reproducibility
- cheddar
- Analysis and Visualisation of Ecological Communities
- chemCal
- Calibration Functions for Analytical Chemistry
- ChemmineOB
- R interface to a subset of OpenBabel functionalities
- ChemmineR
- Cheminformatics Toolkit for R
- chemometrics
- Multivariate Statistical Analysis in Chemometrics
- ChemometricsWithR
- Chemometrics with R - Multivariate Data Analysis in the Natural Sciences and Life Sciences
- ChemometricsWithRData
- Data for package ChemometricsWithR
- ChemoSpec
- Exploratory Chemometrics for Spectroscopy
- cherry
- Multiple Testing Methods for Exploratory Research
- CHFF
- Closest History Flow Field Forecasting for Bivariate Time Series
- chi
- The Chi Distribution
- Chicago
- CHiCAGO: Capture Hi-C Analysis of Genomic Organization
- childsds
- Calculation of standard deviation scores adduced from different growth standards
- chillR
- Statistical Methods for Phenology Analysis in Temperate Fruit Trees
- chimera
- A package for secondary analysis of fusion products
- ChIPComp
- Quantitative comparison of multiple ChIP-seq datasets
- chipenrich
- Gene Set Enrichment For ChIP-seq Peak Data
- chipPCR
- Toolkit of Helper Functions to Pre-Process Amplification Data
- ChIPpeakAnno
- Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges
- ChIPQC
- Quality metrics for ChIPseq data
- ChIPseeker
- ChIPseeker for ChIP peak Annotation, Comparison, and Visualization
- chipseq
- chipseq: A package for analyzing chipseq data
- ChIPseqR
- Identifying Protein Binding Sites in High-Throughput Sequencing Data
- ChIPsim
- Simulation of ChIP-seq experiments
- ChIPtest
- Nonparametric Methods for Identifying Differential Enrichment Regions with ChIP-Seq Data
- ChIPXpress
- ChIPXpress: enhanced transcription factor target gene identification from ChIP-seq and ChIP-chip data using publicly available gene expression profiles
- chngpt
- Change Point Regression
- CHNOSZ
- Chemical Thermodynamics and Activity Diagrams
- CHNOSZ
- Chemical Thermodynamics and Activity Diagrams
- choiceDes
- Design Functions for Choice Studies
- ChoiceModelR
- Choice Modeling in R
- choplump
- Choplump tests
- chopsticks
- The snp.matrix and X.snp.matrix classes
- chopthin
- The Chopthin Resampler
- chords
- Estimation in respondent driven samples.
- choroplethr
- Simplify the Creation of Choropleth Maps in R
- choroplethrAdmin1
- Contains an Administrative-Level-1 Map of the World
- choroplethrMaps
- Contains maps used by the choroplethr package
- chroGPS
- chroGPS: visualizing the epigenome
- chromatosimul
- What the package does (short line)
- chromDraw
- chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion.
- chromer
- Interface to Chromosome Counts Database API
- ChromHeatMap
- Heat map plotting by genome coordinate
- chromoR
- Analysis of chromosomal interactions data (correction, segmentation and comparison)
- chromPlot
- Global visualization tool of genomic data
- chromstaR
- Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data
- chron
- Chronological Objects which can Handle Dates and Times
- CHRONOS
- CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis
- CHsharp
- Choi and Hall Style Data Sharpening
- chunked
- Chunkwise Text-File Processing for 'dplyr'
- CIDnetworks
- Generative Models for Complex Networks with Conditionally Independent Dyadic Structure
- CIFsmry
- Weighted summary of cumulative incidence functions
- cin
- Causal Inference for Neuroscience
- CINdex
- Chromosome Instability Index
- cinf
- Basic tools for chemoinformatics
- CINID
- Curculionidae INstar IDentification
- CINOEDV
- Co-Information based N-Order Epistasis Detector and Visualizer
- CircE
- Circumplex models Estimation
- circlize
- Circular Visualization
- CircNNTSR
- Statistical Analysis of Circular Data using Nonnegative Trigonometric Sums (NNTS) Models
- CircOutlier
- Detection of Outliers in Circular-Circular Regression
- CircStats
- Circular Statistics, from "Topics in circular Statistics" (2001)
- circular
- Circular Statistics
- circular
- Circular Statistics
- cIRT
- Choice Item Response Theory
- cisPath
- Visualization and management of the protein-protein interaction networks.
- cit
- Causal Inference Test
- CITAN
- CITation ANalysis Toolpack
- CITAN
- CITation ANalysis toolpack
- citbcmst
- CIT Breast Cancer Molecular SubTypes Prediction
- citccmst
- CIT Colon Cancer Molecular SubTypes Prediction
- Cite
- An RStudio Addin to Insert BibTex Citation in Rmarkdown Documents
- CItools
- Computation, comparison and sensitivity analysis of composite indicators of performance
- citr
- 'RStudio' Add-in to Insert Markdown Citations
- CityPlot
- Visualization of structure and contents of a database
- cjoint
- AMCE Estimator for Conjoint Experiments
- ckanr
- Client for the Comprehensive Knowledge Archive Network ('CKAN') 'API'
- Ckmeans.1d.dp
- Optimal and Fast Univariate k-Means Clustering
- cladoRcpp
- C++ implementations of phylogenetic cladogenesis calculations
- CLAG
- An unsupervised non hierarchical clustering algorithm handling biological data
- clamix
- Clustering modal multi valued symbolic data
- ClamR
- Time Series Modeling for Climate Change Proxies
- clarifai
- Access to Clarifai API
- class
- Functions for Classification
- ClassComparison
- Classes and Methods for "Class Comparison" Problems on Microarrays
- ClassDiscovery
- Classes and Methods for "Class Discovery" with Microarrays or Proteomics
- classGraph
- Construct Graphs of S4 Class Hierarchies
- classifly
- Explore classification models in high dimensions
- classify
- Classification Accuracy and Consistency under IRT models.
- ClassifyR
- A framework for two-class classification problems, with applications to differential variability and differential distribution testing
- classInt
- Choose Univariate Class Intervals
- classInt
- Choose Univariate Class Intervals
- ClassPrediction
- Classes and Methods for "Class Prediction" with Microarrays or Proteomics
- classSNitch
- Classifies RNA Structure Change in Chemical Mapping Data
- classyfire
- Robust multivariate classification using highly optimised SVM ensembles
- cleangeo
- Cleaning Geometries from Spatial Objects
- cleanNLP
- A Tidy Data Model for Natural Language Processing
- cleanUpdTSeq
- This package classifies putative polyadenylation sites as true or false/internally oligodT primed
- cleaver
- Cleavage of Polypeptide Sequences
- clere
- Simultaneous Variables Clustering and Regression
- clhs
- Conditioned Latin Hypercube Sampling
- ClickClust
- Model-Based Clustering of Categorical Sequences
- clickR
- Fix Data and Create Report Tables from Different Objects
- clickstream
- Analyzes Clickstreams Based on Markov Chains
- clifro
- Easily Download and Visualise Climate Data from CliFlo
- clikcorr
- Censoring Data and Likelihood-Based Correlation Estimation
- climatol
- Climate Tools (Series Homogenization and Derived Products)
- climbeR
- Calculate Average Minimal Depth of a Maximal Subtree for 'ranger' Package Forests
- ClimClass
- Climate Classification According to Several Indices
- climdex.pcic
- PCIC Implementation of Climdex Routines
- ClimDown
- Climate Downscaling Library for Daily Climate Model Output
- clime
- Constrained L1-minimization for Inverse (covariance) Matrix Estimation
- climextRemes
- Tools for Analyzing Climate Extremes
- ClimMob
- Crowdsourcing climate-smart agriculture
- climstats
- R functions for working with station and gridded climate data.
- climtrends
- Statistical Methods for Climate Sciences
- climtrends
- Statistical Methods for Climate Sciences
- climwin
- Climate Window Analysis
- clinfun
- Clinical Trial Design and Data Analysis Functions
- clinsig
- Clinical Significance Functions
- clinUtiDNA
- Clinical Utility of DNA Testing
- clippda
- A package for the clinical proteomic profiling data analysis
- clipper
- Gene Set Analysis Exploiting Pathway Topology
- clipr
- Read and Write from the System Clipboard
- clisymbols
- Unicode Symbols at the R Prompt
- CLME
- Constrained Inference for Linear Mixed Effects Models
- clogitboost
- Boosting Conditional Logit Model
- clogitL1
- Fitting exact conditional logistic regression with lasso and elastic net penalties.
- clogitLasso
- Lasso Estimation of Conditional Logistic Regression Models for Matched Case-Control Studies
- Clomial
- Infers clonal composition of a tumor
- Clonality
- Clonality testing
- clonotypeR
- High throughput analysis of T cell antigen receptor sequences
- cloudUtil
- Cloud Utilization Plots
- clpAPI
- R Interface to C API of COIN-OR Clp
- CLSOCP
- A smoothing Newton method SOCP solver
- clst
- Classification by local similarity threshold
- clstutils
- Tools for performing taxonomic assignment.
- clttools
- Central Limit Theorem Experiments (Theoretical and Simulation)
- clubSandwich
- Cluster-Robust (Sandwich) Variance Estimators with Small-Sample Corrections
- clue
- Cluster Ensembles
- ClueR
- CLUster Evaluation (CLUE)
- clues
- Clustering Method Based on Local
- CluMix
- Clustering and Visualization of Mixed-Type Data
- clusrank
- Wilcoxon Rank Sum Test for Clustered Data
- clust.bin.pair
- Statistical Methods for Analyzing Clustered Matched Pair Data
- clustComp
- Clustering Comparison Package
- clustDDist
- Clustering Discrete Distributions
- cluster
- "Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.
- clusterCrit
- Clustering Indices
- cluster.datasets
- Cluster Analysis Data Sets
- ClusteredMutations
- Location and Visualization of Clustered Somatic Mutations
- clusterExperiment
- Compare clusterings for single-cell sequencing
- clusterfly
- Explore clustering interactively using R and GGobi
- clusterGeneration
- Random Cluster Generation (with Specified Degree of Separation)
- clusterGenomics
- Identifying clusters in genomics data by recursive partitioning
- clusterhap
- Clustering Genotypes in Haplotypes
- Clustericat
- This package performs clustering for categorical dataset.
- clustering.sc.dp
- Optimal Distance-Based Clustering for Multidimensional Data with Sequential Constraint
- clusternomics
- Integrative Clustering for Heterogeneous Biomedical Datasets
- clusterpathRcpp
- Fast agglomerative convex clustering, original Rcpp implementation
- clusterPower
- Power calculations for cluster-randomized and cluster-randomized crossover trials
- clusterProfiler
- statistical analysis and visualization of functional profiles for genes and gene clusters
- ClusterR
- Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans and K-Medoids Clustering
- ClusterRankTest
- Rank Tests for Clustered Data
- clusterRepro
- Reproducibility of gene expression clusters
- clusterSEs
- Calculate Cluster-Robust p-Values and Confidence Intervals
- ClusterSignificance
- The ClusterSignificance package provides tools to assess if clusters have a separation different from random or permuted data
- clusterSim
- Searching for Optimal Clustering Procedure for a Data Set
- clusterStab
- Compute cluster stability scores for microarray data
- ClusterStability
- Assessment of Stability of Individual Objects or Clusters in Partitioning Solutions
- clustertend
- Check the Clustering Tendency
- clusteval
- Evaluation of Clustering Algorithms
- ClustGeo
- Clustering of Observations with Geographical Constraints
- clustMD
- Model Based Clustering for Mixed Data
- clustMixType
- k-Prototypes Clustering for Mixed Variable-Type Data
- ClustMMDD
- Variable Selection in Clustering by Mixture Models for Discrete Data
- ClustOfVar
- Clustering of variables
- clustrd
- Methods for Joint Dimension Reduction and Clustering
- clustsig
- Significant Cluster Analysis
- ClustVarLV
- Clustering of Variables Around Latent Variables
- clustvarsel
- Variable Selection for Model-Based Clustering
- clv
- Cluster Validation Techniques
- clValid
- Validation of Clustering Results
- CMA
- Synthesis of microarray-based classification
- cmaes
- Covariance Matrix Adapting Evolutionary Strategy
- cmaes
- Covariance Matrix Adapting Evolutionary Strategy
- cmaesr
- Covariance Matrix Adaptation Evolution Strategy
- CMC
- Cronbach-Mesbah Curve
- CMF
- Collective matrix factorization
- cmm
- Categorical Marginal Models
- cmna
- Computational Methods for Numerical Analysis
- cMonkey
- cMonkey integrated biclustering algorithm
- CMPControl
- Control Charts for Conway-Maxwell-Poisson Distribution
- CMplot
- Circle Manhattan Plot
- cmprsk
- Subdistribution Analysis of Competing Risks
- cmprskQR
- Analysis of Competing Risks Using Quantile Regressions
- cmprskWeb
- Multistage Competing Risks Analysis for Web data
- CMRCT
- Fit Capture-Mark-Recapture models in continuous time.
- cmrutils
- Misc Functions of the Center for the Mathematical Research
- cmsaf
- Tools for CM SAF NetCDF Data
- cmvnorm
- The Complex Multivariate Gaussian Distribution
- cna
- A Package for Coincidence Analysis (CNA)
- cnagIO
- Methods for reading CNAG files
- CNAnorm
- A normalization method for Copy Number Aberration in cancer samples
- cncaGUI
- Canonical Non-Symmetrical Correspondence Analysis in R
- CNEr
- CNE Detection and Visualization
- cnf2freq
- same Chromosome N-loci F2 frequencies
- cnf2freqibdtracer
- same Chromosome N-loci F2 frequencies, with IBD tracing
- cn.farms
- cn.FARMS - factor analysis for copy number estimation
- cnmlcd
- Maximum Likelihood Estimation of a Log-Concave Density Function
- cn.mops
- cn.mops - Mixture of Poissons for CNV detection in NGS data
- CNOGpro
- Copy Numbers of Genes in prokaryotes
- CNORdt
- Add-on to CellNOptR: Discretized time treatments
- CNORfeeder
- Integration of CellNOptR to add missing links
- CNORfuzzy
- Addon to CellNOptR: Fuzzy Logic
- CNORode
- ODE add-on to CellNOptR
- CNPBayes
- Bayesian mixture models for copy number polymorphisms
- CNprep
- Pre-process DNA Copy Number (CN) Data for Detection of CN Events
- CNTools
- Convert segment data into a region by sample matrix to allow for other high level computational analyses.
- CNVassoc
- Association Analysis of CNV Data and Imputed SNPs
- CNVassocData
- Example data sets for association analysis of CNV data
- cnvGSA
- Gene Set Analysis of (Rare) Copy Number Variants
- CNVPanelizer
- Reliable CNV detection in targeted sequencing applications
- CNVrd2
- CNVrd2: a read depth-based method to detect and genotype complex common copy number variants from next generation sequencing data.
- CNVtools
- A package to test genetic association with CNV data
- coala
- A Framework for Coalescent Simulation
- coalescentMCMC
- MCMC Algorithms for the Coalescent
- coalesceR
- A pedagogical tool to teach the basics of coalescent theory
- coarseDataTools
- A Collection of Functions to Help with Analysis of Coarsely Observed Data
- cobalt
- Covariate Balance Tables and Plots
- cobindR
- Finding Co-occuring motifs of transcription factor binding sites
- COBRA
- Nonlinear Aggregation of Predictors
- cobs
- COnstrained B-Splines (Sparse Matrix Based)
- cobs
- COnstrained B-Splines (Sparse Matrix Based)
- cobs99
- Constrained B-splines -- outdated 1999 version
- CoCiteStats
- Different test statistics based on co-citation.
- CoClust
- Copula Based Cluster Analysis
- COCONUT
- COmbat CO-Normalization Using conTrols (COCONUT)
- cocor
- Comparing Correlations
- cocoreg
- Extracts Shared Variation in Collections of Datasets Using Regression Models
- cocorresp
- Co-correspondence analysis methods
- cocorresp
- Co-Correspondence Analysis Methods
- cocron
- Statistical Comparisons of Two or more Alpha Coefficients
- coda
- Output Analysis and Diagnostics for MCMC
- codadiags
- Markov chain Monte Carlo burn-in based on "bridge" statistics
- cOde
- Automated C Code Generation for Use with the 'deSolve' and 'bvpSolve' Packages
- codebooks
- Management of Survey Data
- codelink
- Manipulation of Codelink microarray data
- codep
- Multiscale Codependence Analysis
- codetools
- Code Analysis Tools for R
- CODEX
- A Normalization and Copy Number Variation Detection Method for Whole Exome Sequencing
- codingMatrices
- Alternative Factor Coding Matrices for Linear Model Formulae
- codyn
- Community Dynamics Metrics
- coefficientalpha
- Robust Coefficient Alpha and Omega with Missing and Non-Normal Data
- coefficientalpha
- Robust Cronbach's alpha with missing and non-normal data
- coefplot
- Plots Coefficients from Fitted Models
- coenocliner
- Coenocline Simulation
- coenoflex
- Gradient-Based Coenospace Vegetation Simulator
- coexist
- Species coexistence modeling and analysis
- cofclust
- Consensus Optimization Fuzzy Clustering
- cofeatureR
- Generate Cofeature Matrices
- CoGAPS
- Coordinated Gene Activity in Pattern Sets
- COGARCH
- Simulation and inferenc for COGARCH(1,1) processes
- cogena
- co-expressed gene-set enrichment analysis
- coGPS
- cancer outlier Gene Profile Sets
- COHCAP
- CpG Island Analysis Pipeline for Illumina Methylation Array and Targeted BS-Seq Data
- CoImp
- Copula Based Imputation Method
- coin
- Conditional Inference Procedures in a Permutation Test Framework
- coin
- Conditional Inference Procedures in a Permutation Test Framework
- CoinMinD
- Simultaneous Confidence Interval for Multinomial Proportion
- cointmonitoR
- Consistent Monitoring of Stationarity and Cointegrating Relationships
- cointReg
- Parameter Estimation and Inference in a Cointegrating Regression
- cold
- Count Longitudinal Data
- colf
- Constrained Optimization on Linear Function
- CollapsABEL
- Generalized CDH (GCDH) Analysis
- CollocInfer
- Collocation Inference for Dynamic Systems
- collUtils
- Auxiliary Package for Package 'CollapsABEL'
- coloc
- Colocalisation tests of two genetic traits
- coloredICA
- Implementation of Colored Independent Component Analysis and Spatial Colored Independent Component Analysis
- colorfulVennPlot
- Plot and add custom coloring to Venn diagrams for 2-dimensional, 3-dimensional and 4-dimensional data.
- colorhcplot
- Colorful Hierarchical Clustering Dendrograms
- colormap
- Color Palettes using Colormaps Node Module
- ColorPalette
- Color Palettes Generator
- colorplaner
- A 'ggplot2' Extension to Visualize Two Variables per Color Aesthetic Through Color Space Projections
- colorRamps
- Builds color tables
- colorscience
- Color Science Methods and Data
- colorscience
- Color Science Methods and Data
- colorspace
- Color Space Manipulation
- colorspace
- Color Space Manipulation
- colorSpec
- Color Calculations with Emphasis on Spectral Data
- colortools
- Tools for colors in a Hue-Saturation-Value (HSV) color model
- colourlovers
- R Client for the COLOURlovers API
- colourpicker
- A Colour Picker Tool for Shiny and for Selecting Colours in Plots
- colourschemes
- Data-driven colour scheme mappers
- colourvision
- Colour Vision Models
- comato
- Analysis of Concept Maps
- COMBIA
- Synergy/Antagonism Analyses of Drug Combinations
- combinat
- combinatorics utilities
- Combine
- Game-Theoretic Probability Combination
- CombinePortfolio
- Estimation of Optimal Portfolio Weights by Combining Simple Portfolio Strategies
- CombinePValue
- Combine a Vector of Correlated p-values
- CombinS
- Construction Methods of some Series of PBIB Designs
- combiter
- Combinatorics Iterators
- CombMSC
- Combined Model Selection Criteria
- comclim
- Community climate statistics.
- coMET
- coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns
- cometExactTest
- Exact Test from the Combinations of Mutually Exclusive Alterations (CoMEt) Algorithm
- comf
- Functions for Thermal Comfort Research
- ComICS
- Computational Methods for Immune Cell-Type Subsets
- commandr
- Command pattern in R
- commandr
- Command pattern in R
- CommEcol
- Community Ecology Analyses
- CommEcol
- Community Ecology Analyses
- commentr
- Print Nicely Formatted Comments for Use in Script Files
- CommonJavaJars
- Useful libraries for building a Java based GUI under R
- CommonJavaJars
- Useful libraries for building a Java based GUI under R
- commonmark
- High Performance CommonMark and Github Markdown Rendering in R
- CommonTrend
- Extract and plot common trends from a cointegration system. Calculate P-value for Johansen Statistics.
- CommT
- Comparative Phylogeographic Analysis using the Community Tree Framework
- COMMUNAL
- Robust Selection of Cluster Number K
- CommunityCorrelogram
- Ecological Community Correlogram
- CoModes
- This package performs clustering for categorical dataset by using a conditional modes mixture model
- Comp2ROC
- Compare Two ROC Curves that Intersect
- compactr
- Creates empty plots with compact axis notation
- compare
- Comparing Objects for Differences
- compareC
- Compare Two Correlated C Indices with Right-censored Survival Outcome
- CompareCausalNetworks
- Interface to Diverse Estimation Methods of Causal Networks
- compareDF
- Do a Git Style Diff of the Rows Between Two Dataframes with Similar Structure
- compareGroups
- Descriptive Analysis by Groups
- compareODM
- comparison of medical forms in CDISC ODM format
- CompareTests
- Correct for Verification Bias in Diagnostic Accuracy & Agreement
- comparison
- Multivariate likelihood ratio calculation and evaluation
- COMPASS
- Combinatorial Polyfunctionality Analysis of Single Cells
- compcodeR
- RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods
- compeir
- Event-specific incidence rates for competing risks data
- compendiumdb
- Tools for Retrieval and Storage of Functional Genomics Data
- compEpiTools
- Tools for computational epigenomics
- compete
- Analyzing Social Hierarchies
- CompGLM
- Conway-Maxwell-Poisson GLM and distribution functions
- CompGO
- An R pipeline for .bed file annotation, comparing GO term enrichment between gene sets and data visualisation
- compHclust
- Complementary Hierarchical Clustering
- Compind
- Composite Indicators Functions
- ComplexAnalysis
- Numerically Evaluate Integrals and Derivatives (also Higher Order) of Vector- And Complex-Valued Functions
- ComplexHeatmap
- Making Complex Heatmaps
- complexplus
- Functions of Complex or Real Variable
- complmrob
- Robust Linear Regression with Compositional Data as Covariates
- CompLognormal
- Functions for actuarial scientists
- compoisson
- Conway-Maxwell-Poisson Distribution
- COMPoissonReg
- Conway-Maxwell Poisson (COM-Poisson) Regression
- Compositional
- Compositional Data Analysis
- compositions
- Compositional Data Analysis
- compound.Cox
- Estimation and Gene Selection Based on the Compound Covariate Method Under the Cox Proportional Hazard Model
- Compounding
- Computing Continuous Distributions
- CompQuadForm
- Distribution Function of Quadratic Forms in Normal Variables
- CompR
- Paired Comparison Data Analysis
- CompRandFld
- Composite-Likelihood Based Analysis of Random Fields
- CompRandFld
- Composite-Likelihood Based Analysis of Random Fields
- compute.es
- Compute Effect Sizes
- Conake
- Continuous Associated Kernel Estimation
- concatenate
- Human-Friendly Text from Unknown Strings
- conclust
- Pairwise Constraints Clustering
- ConConPiWiFun
- Optimisation with Continuous Convex Piecewise (Linear and Quadratic) Functions
- concor
- Concordance
- concordance
- Product Concordance
- concreg
- Concordance regression
- cond
- Approximate conditional inference for logistic and loglinear models
- condformat
- Conditional Formatting in Data Frames
- condGEE
- Parameter estimation in conditional GEE for recurrent event gap times
- condmixt
- Conditional Density Estimation with Neural Network Conditional Mixtures
- condMVNorm
- Conditional Multivariate Normal Distribution
- CONDOP
- Condition-Dependent Operon Predictions
- CondReg
- Condition Number Regularized Covariance Estimation
- condSURV
- Estimation of the Conditional Survival Function for Ordered Multivariate Failure Time Data
- condvis
- Conditional Visualization for Statistical Models
- coneproj
- Primal or Dual Cone Projections with Routines for Constrained Regression
- conf.design
- Construction of factorial designs
- CONFESS
- Cell OrderiNg by FluorEScence Signal
- confidence
- Confidence Estimation of Environmental State Classifications
- config
- Manage Environment Specific Configuration Values
- conformal
- Conformal Prediction for Regression and Classification
- conformal
- Conformal mapping from a polygon to a disk
- confreq
- Configural Frequencies Analysis Using Log-Linear Modeling
- conicfit
- Algorithms for Fitting Circles, Ellipses and Conics Based on the Work by Prof. Nikolai Chernov
- conicfit
- Algorithms for Fitting Circles, Ellipses and Conics Based on the Work by Prof. Nikolai Chernov
- conics
- Plot Conics
- Conigrave
- Flexible Tools for Multiple Imputation
- conjoint
- Conjoint analysis package
- ConjointChecks
- A package to check the cancellation axioms of conjoint measurement.
- connect3
- A Tool for Reproducible Research by Converting 'LaTeX' Files Generated by R Sweave to Rich Text Format Files
- ConnMatTools
- Tools for Working with Connectivity Data
- conover.test
- Conover-Iman Test of Multiple Comparisons Using Rank Sums
- ConR
- Computation of Parameters Used in Preliminary Assessment of Conservation Status
- ConsensusClusterPlus
- ConsensusClusterPlus
- consensusSeekeR
- Detection of consensus regions inside a group of experiences using genomic positions and genomic ranges
- ConSpline
- Partial Linear Least-Squares Regression using Constrained Splines
- ConsRank
- Compute the Median Ranking(s) According to the Kemeny's Axiomatic Approach
- constants
- Defines some physical constants and functions commonly used in optics, plasmonics.
- constrainedKriging
- Constrained, Covariance-Matching Constrained and Universal Point or Block Kriging
- ContaminatedMixt
- Model-Based Clustering and Classification with the Multivariate Contaminated Normal Distribution
- contfrac
- Continued Fractions
- contiBAIT
- Improves Early Build Genome Assemblies using Strand-Seq Data
- conting
- Bayesian Analysis of Contingency Tables
- contoureR
- Contouring of Non-Regular Three-Dimensional Data
- contrast
- A collection of contrast methods
- contrast
- A Collection of Contrast Methods
- controlTest
- Median Comparison for Two-Sample Right-Censored Survival Data
- conumee
- Enhanced copy-number variation analysis using Illumina DNA methylation arrays
- ConvCalendar
- Converts dates between calendars
- ConvergenceConcepts
- Seeing convergence concepts in action
- convert
- Convert Microarray Data Objects
- convertGraph
- Convert Graphical Files Format
- convertr
- Convert Between Units
- convevol
- Quantifies and assesses the significance of convergent evolution
- convey
- Income Concentration Analysis with Complex Survey Samples
- convoi
- Convex Optimization in R
- convoSPAT
- Convolution-Based Nonstationary Spatial Modeling
- cooccur
- Probabilistic Species Co-Occurrence Analysis in R
- cooccurNet
- Co-Occurrence Network
- coop
- Co-Operation: Fast Covariance, Correlation, and Cosine Similarity Operations
- cooptrees
- Cooperative aspects of optimal trees in weighted graphs
- copa
- Functions to perform cancer outlier profile analysis.
- copBasic
- General Bivariate Copula Theory and Many Utility Functions
- copCAR
- Fitting the copCAR Regression Model for Discrete Areal Data
- COPDSexualDimorphism
- Sexual dimorphic and COPD differential analysis for gene expression and methylation.
- cope
- Coverage Probability Excursion (CoPE) Sets
- copula
- Multivariate Dependence with Copulas
- copula
- Multivariate Dependence with Copulas
- CopulaDTA
- Copula Based Bivariate Beta-Binomial Model for Diagnostic Test Accuracy Studies
- copulaedas
- Estimation of Distribution Algorithms Based on Copulas
- Copula.Markov
- Estimation and Statistical Process Control Under Copula-Based Time Series Models
- CopulaRegression
- Bivariate Copula Based Regression Models
- CopulaREMADA
- Copula Mixed Effect Models for Bivariate and Trivariate Meta-Analysis of Diagnostic Test Accuracy Studies
- CopyDetect
- Computing Statistical Indices to Detect Answer Copying on Multiple-Choice Tests
- copynumber
- Segmentation of single- and multi-track copy number data by penalized least squares regression.
- CopyNumber450k
- R package for calling CNV from Illumina 450k methylation microarrays
- CopyNumber450kCancer
- Baseline Correction for Copy Number Data from Cancer Samples
- CopywriteR
- Copy number information from targeted sequencing using off-target reads
- coRanking
- Co-Ranking Matrix
- Corbi
- Collection of Rudimentary Bioinformatics Tools
- Corbi
- Collection of Rudimentary Bioinformatics Tools
- corclass
- Correlational Class Analysis
- corcounts
- Generate correlated count random variables
- cord
- Community Estimation in G-Models via CORD
- cordillera
- OPTICS Cordillera
- CORE
- Cores of Recurrent Events
- CoRegNet
- CoRegNet : reconstruction and integrated analysis of co-regulatory networks
- corehunter
- Multi-Purpose Core Subset Selection
- CORElearn
- Classification, Regression and Feature Evaluation
- coreNLP
- Wrappers Around Stanford CoreNLP Tools
- coreSim
- Core Functionality for Simulating Quantities of Interest from Generalised Linear Models
- coreTDT
- TDT for compound heterozygous and recessive models
- corHMM
- Analysis of Binary Character Evolution
- corHMM
- Analysis of binary character evolution
- corkscrew
- Preprocessor for Data Modeling
- corlink
- Record Linkage, Incorporating Imputation for Missing Agreement Patterns, and Modeling Correlation Patterns Between Fields
- CORM
- The Clustering of Regression Models Method
- Cormotif
- Correlation Motif Fit
- CorMut
- Detect the correlated mutations based on selection pressure
- coRNAi
- Analysis of co-knock-down RNAi data
- corpcor
- Efficient Estimation of Covariance and (Partial) Correlation
- corpora
- Statistics and data sets for corpus frequency data
- corpora
- Statistics and Data Sets for Corpus Frequency Data
- corr2D
- Implementation of 2D Correlation Analysis in R
- CorrBin
- Nonparametrics with Clustered Binary and Multinomial Data
- CorrBin
- Nonparametrics with Clustered Binary and Multinomial Data
- correctedAUC
- Correcting AUC for Measurement Error
- CorrectOverloadedPeaks
- Correct Overloaded Peaks from GC-APCI-MS Data
- CorReg
- Linear Regression Based on Linear Structure Between Covariates
- corregp
- Functions and Methods for Correspondence Regression
- Correlplot
- A collection of functions for graphing correlation matrices
- CORREP
- Multivariate Correlation Estimator and Statistical Inference Procedures.
- corrgram
- Plot a Correlogram
- CorrMixed
- Estimate Correlations Between Repeatedly Measured Endpoints (E.g., Reliability) Based on Linear Mixed-Effects Models
- corrplot
- Visualization of a Correlation Matrix
- corrr
- Correlations in R
- corrsieve
- CorrSieve
- CorrToolBox
- Modeling Correlational Magnitude Transformations in Discretization Contexts
- corTools
- Tools for processing data after a Genome Wide Association Study
- CoSeg
- An R package for cosegregation analysis and simulating pedigrees
- coseq
- Co-Expression Analysis of Sequencing Data
- COSINE
- COndition SpecIfic sub-NEtwork
- cosinor
- Tools for estimating and predicting the cosinor model
- cosmiq
- cosmiq - COmbining Single Masses Into Quantities
- cosmoFns
- Functions for cosmological distances, times, luminosities, etc.
- CosmoPhotoz
- Photometric redshift estimation using generalized linear models
- cosmosR
- cosmosR
- COSNet
- Cost Sensitive Network for node label prediction on graphs with highly unbalanced labelings
- cosso
- Fit Regularized Nonparametric Regression Models Using COSSO Penalty.
- costat
- Time series costationarity determination
- CosW
- The CosW Distribution
- cotrend
- Consistant Cotrend Rank Selection
- couchDB
- Connect to and Work with CouchDB Databases
- COUNT
- Functions, Data and Code for Count Data
- CountClust
- Clustering and Visualizing RNA-Seq Expression Data using Grade of Membership Models
- Counterfactual
- Estimation and Inference Methods for Counterfactual Analysis
- Countr
- Flexible Univariate Count Models Based on Renewal Processes
- countreg
- Count Data Regression
- countrycode
- Convert Country Names and Country Codes
- CountsEPPM
- Mean and Variance Modeling of Count Data
- countytimezones
- Convert from UTC to Local Time for United States Counties
- countyweather
- Compiles Meterological Data for U.S. Counties
- COUSCOus
- A Residue-Residue Contact Detecting Method
- covafillr
- Local Polynomial Regression of State Dependent Covariates in State-Space Models
- covBM
- Brownian Motion Processes for 'nlme'-Models
- covEB
- Empirical Bayes estimate of block diagonal covariance matrices
- CoverageView
- Coverage visualization package for R
- covLCA
- Latent Class Models with Covariate Effects on Underlying and Measured Variables
- covmat
- Covariance Matrix Estimation
- covr
- Test Coverage for Packages
- covreg
- A simultaneous regression model for the mean and covariance
- covRNA
- Multivariate Analysis of Transcriptomic Data
- covRobust
- Robust Covariance Estimation via Nearest Neighbor Cleaning
- CovSel
- Model-Free Covariate Selection
- CovSelHigh
- Model-Free Covariate Selection in High Dimensions
- covsep
- Tests for Determining if the Covariance Structure of 2-Dimensional Data is Separable
- covTest
- Computes covariance test for adaptive linear modelling
- cowplot
- Streamlined Plot Theme and Plot Annotations for 'ggplot2'
- cowsay
- Messages, Warnings, Strings with Ascii Animals
- CoxBoost
- Cox models by likelihood based boosting for a single survival endpoint or competing risks
- CoxFlexBoost
- Boosting Flexible Cox Models (with Time-Varying Effects)
- coxinterval
- Cox-Type Models for Interval-Censored Data
- coxme
- Mixed Effects Cox Models
- Coxnet
- Regularized Cox Model
- coxphf
- Cox regression with Firth's penalized likelihood
- coxphw
- Weighted Estimation in Cox Regression
- CoxPlus
- Cox Regression (Proportional Hazards Model) with Multiple Causes and Mixed Effects
- CoxRidge
- Cox Models with Dynamic Ridge Penalties
- coxrobust
- Robust Estimation in Cox Model
- coxsei
- Fitting a CoxSEI Model
- CP
- Conditional Power Calculations
- cp4p
- Calibration Plot for Proteomics
- cpa
- Confirmatory Path Analysis through the d-sep tests
- cpca
- Methods to perform Common Principal Component Analysis (CPCA)
- CPE
- Concordance Probability Estimates in Survival Analysis
- CpGassoc
- Association Between Methylation and a Phenotype of Interest
- cpgen
- Parallelized Genomic Prediction and GWAS
- CpGFilter
- CpG Filtering Method Based on Intra-class Correlation Coefficients
- CPHshape
- Find the maximum likelihood estimator of the shape constrained hazard baseline and the effect parameters in the Cox proportional hazards model
- cpk
- Clinical Pharmacokinetics
- cplexAPI
- R Interface to C API of IBM ILOG CPLEX
- cplm
- Compound Poisson Linear Models
- cpm
- Sequential and Batch Change Detection Using Parametric and Nonparametric Methods
- CPMCGLM
- Correction of the pvalue after multiple coding
- Cprob
- Conditional probability function of a competing event
- cpvSNP
- Gene set analysis methods for SNP association p-values that lie in genes in given gene sets
- cqn
- Conditional quantile normalization
- cqrReg
- Quantile, Composite Quantile Regression and Regularized Versions
- cquad
- Conditional Maximum Likelihood for Quadratic Exponential Models for Binary Panel Data
- CR
- Power Calculation for Weighted Log-Rank Tests in Cure Rate Models
- CRAC
- Cosmology R Analysis Code
- cRacker
- R-script suite for automated processing of proteomic peptide lists
- crackR
- Probabilistic damage tolerance analysis for fatigue cracking of metallic aerospace structures
- cramer
- Multivariate nonparametric Cramer-Test for the two-sample-problem
- crandatapkgs
- Find Data-Only Packages on CRAN
- crank
- Completing Ranks
- cranlogs
- Download Logs from the 'RStudio' 'CRAN' Mirror
- crantastic
- Various R tools for http://crantastic.org/
- crawl
- Fit Continuous-Time Correlated Random Walk Models to Animal Movement Data
- crayon
- Colored Terminal Output
- crblocks
- Categorical Randomized Block Data Analysis
- crch
- Censored Regression with Conditional Heteroscedasticity
- CreditMetrics
- Functions for calculating the CreditMetrics risk model
- creditr
- Credit Default Swaps in R
- credule
- Credit Default Swap Functions
- cremo
- cremo: Comparative REndering of Model Outputs
- CRF
- Conditional Random Fields
- CRF
- Conditional Random Fields
- cricketr
- Analyze Cricketers Based on ESPN Cricinfo Statsguru
- CRImage
- CRImage a package to classify cells and calculate tumour cellularity
- crimCV
- Group-Based Modelling of Longitudinal Data
- crimelinkage
- Statistical Methods for Crime Series Linkage
- CRISPRseek
- Design of target-specific guide RNAs in CRISPR-Cas9, genome-editing systems
- crisprseekplus
- crisprseekplus
- CrispRVariants
- Tools for counting and visualising mutations in a target location
- crlmm
- Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays
- CRM
- Continual Reassessment Method (CRM) for Phase I Clinical Trials
- crmn
- CCMN and other noRMalizatioN methods for metabolomics data
- crmPack
- Object-Oriented Implementation of CRM Designs
- crn
- Downloads and Builds datasets for Climate Reference Network
- crop
- Graphics Cropping Tool
- crop
- Graphics Cropping Tool
- cropData
- Modelling crop trial data
- cropr
- simulate crop growth
- CrossClustering
- A Partial Clustering Algorithm with Automatic Estimation of the Number of Clusters and Identification of Outliers
- crossdes
- Construction of Crossover Designs
- crossmatch
- The Cross-match Test
- crossmeta
- Cross Platform Meta-Analysis of Microarray Data
- Crossover
- Analysis and Search of Crossover Designs
- crossReg
- Confidence intervals for crossover points of two simple regression lines
- CrossVA
- Verbal Autopsy Data Transform for Use with Various Coding Algorithms
- crossval
- Generic Functions for Cross Validation
- CrossVal
- Classes and methods for cross validation of "class prediction" with microarrays or proteomics
- CrossValidate
- Classes and Methods for Cross Validation of "Class Prediction" with Microarrays or Proteomics
- crp.CSFP
- CreditRisk+ Portfolio Model
- crqa
- Cross-Recurrence Quantification Analysis for Categorical and Continuous Time-Series
- crrp
- Penalized Variable Selection in Competing Risks Regression
- crrSC
- Competing risks regression for Stratified and Clustered data
- crrstep
- Stepwise Covariate Selection for the Fine & Gray Competing Risks Regression Model
- crs
- Categorical Regression Splines
- crskdiag
- Diagnostics for Fine and Gray Model
- crsnls
- Nonlinear Regression Parameters Estimation by 'CRS4HC' and 'CRS4HCe'
- crtests
- Classification and Regression Tests
- CRTgeeDR
- Doubly Robust Inverse Probability Weighted Augmented GEE Estimator
- CRTSize
- Sample Size Estimation Functions for Cluster Randomized Trials
- crul
- HTTP Client
- crules
- Classification Rules
- crunch
- Crunch.io Data Tools
- cruts
- Interface to Climatic Research Unit Time-Series Version 3.21 Data
- CrypticIBDcheck
- Identifying cryptic relatedness in genetic association studies
- CryptRndTest
- Statistical Tests for Cryptographic Randomness
- cryst
- Calculate the Relative Crystallinity of Starch by XRD and FTIR
- csampling
- Functions for Conditional Simulation in Regression-Scale Models
- CSAR
- Statistical tools for the analysis of ChIP-seq data
- csaw
- ChIP-Seq Analysis with Windows
- CSclone
- Bayesian Nonparametric Modeling in R
- CSFA
- Connectivity Scores with Factor Analysis
- cSFM
- Covariate-adjusted Skewed Functional Model (cSFM)
- cshapes
- The CShapes Dataset and Utilities
- cshapes
- CShapes Dataset and Utilities
- cslogistic
- Conditionally Specified Logistic Regression
- csn
- Closed Skew-Normal Distribution
- csn
- Closed Skew-Normal Distribution
- csound
- Accessing Csound functionality through R
- csp
- Correlates of State Policy Data Set in R
- csrplus
- Methods to Test Hypotheses on the Distribution of Spatial Point Processes
- csSAM
- csSAM - cell-specific Significance Analysis of Microarrays
- csSAM
- csSAM - cell-specific Significance Analysis of Microarrays
- CSSP
- ChIP-Seq Statistical Power
- cssTools
- Cognitive Social Structure Tools
- cstab
- Selection of Number of Clusters via Normalized Clustering Instability
- cstar
- Substantive significance testing for regression estimates and marginal effects.
- csvread
- Fast Specialized CSV File Loader
- csvy
- Import and Export CSV Data with a YAML Metadata Header
- ctc
- Cluster and Tree Conversion.
- ctglm
- ctglm
- cthmm
- Latent Continuous Time Markov Chains
- cthreshER
- Continuous Threshold Expectile Regression
- ctl
- Correlated Trait Locus (CTL) Mapping in R
- ctm
- Conditional Transformation Models
- CTM
- A Text Mining Toolkit for Chinese Document
- ctmcd
- Estimating the Parameters of a Continuous-Time Markov Chain from Discrete-Time Data
- ctmcmove
- Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains
- ctmcmove
- Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains
- ctmcMove
- Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains
- ctmDevel
- Conditional Transformation Models
- ctmm
- Continuous-Time Movement Modeling
- ctqr
- Censored and Truncated Quantile Regression
- cts
- Continuous Time Autoregressive Models
- ctsem
- Continuous Time Structural Equation Modelling
- ctsGE
- Clustering of Time Series Gene Expression data
- CTT
- Classical Test Theory Functions
- CTTShiny
- Classical Test Theory via Shiny
- ctv
- CRAN Task Views
- ctv
- CRAN Task Views
- CUB
- A Class of Mixture Models for Ordinal Data
- cubature
- Adaptive multivariate integration over hypercubes
- cubfits
- Codon Usage Bias Fits
- Cubist
- Rule- and Instance-Based Regression Modeling
- Cubist
- Rule- and Instance-Based Regression Modeling
- cudaBayesreg
- CUDA Parallel Implementation of a Bayesian Multilevel Model for fMRI Data Analysis
- cudaBayesregData
- Data sets for the examples used in the package "cudaBayesreg"
- cudia
- CUDIA Cross-level Imputation
- CUFF
- Charles's Utility Function using Formula
- CulturalAnalytics
- Functions for statistical analysis and plotting of image properties
- cummeRbund
- Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.
- CUMP
- Analyze Multivariate Phenotypes by Combining Univariate Results
- cumplyr
- Extends ddply to allow calculation of cumulative quantities.
- cumSeg
- Change point detection in genomic sequences
- curl
- A Modern and Flexible Web Client for R
- curlconverter
- Tools to Transform 'cURL' Command-Line Calls to 'httr' Requests
- currentSurvival
- Estimation of CCI and CLFS Functions
- curry
- Partial Function Application with %<%, %-<%, and %><%
- curve
- Dynamic Systems Estimation - Curvature Extensions
- curvetest
- The package will formally test two curves represented by discrete data sets to be statistically equal or not when the errors of the two curves were assumed either equal or not using the tube formula to calculate the tail probabilities.
- curvHDR
- Filtering of Flow Cytometry Samples
- cusp
- Cusp-Catastrophe Model Fitting Using Maximum Likelihood
- cusp
- Cusp-Catastrophe Model Fitting Using Maximum Likelihood
- customizedTraining
- Customized Training for Lasso and Elastic-Net Regularized Generalized Linear Models
- customProDB
- Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search.
- CUSUMdesign
- Compute Decision Interval and Average Run Length for CUSUM Charts
- cutoffR
- CUTOFF: A Spatio-temporal Imputation Method
- cuttlefish.model
- An R package to perform LPUE standardization and stock assessment of the English Channel cuttlefish stock using a two-stage biomass model
- cvAUC
- Cross-Validated Area Under the ROC Curve Confidence Intervals
- CVcalibration
- Estimation of the Calibration Equation with Error-in Observations
- CVD
- Color Vision Deficiencies
- CVD
- Color Vision Deficiencies
- CVE
- Cancer Variant Explorer
- cvGWAS
- Genome-wide association analysis based on predictive ability
- cvm.test
- Discrete Cramer von Mises Goodness-of-Fit Tests
- cvplogistic
- Penalized Logistic Regression Model using Majorization Minimization by Coordinate Descent (MMCD) Algorithm
- cvq2
- Calculate the predictive squared correlation coefficient
- cvrcalc
- Cardiovascular Risk Calculator
- CVST
- Fast Cross-Validation via Sequential Testing
- CVThresh
- Level-Dependent Cross-Validation Thresholding
- cvTools
- Cross-validation tools for regression models
- CVTuningCov
- Regularized Estimators of Covariance Matrices with CV Tuning
- cvxbiclustr
- Convex Biclustering Algorithm
- cvxclustr
- Splitting methods for convex clustering
- cwhmisc
- Miscellaneous Functions for Math, Plotting, Printing, Statistics, Strings, and Tools
- cwm
- Cluster Weighted Models by EM algorithm
- cxxfunplus
- extend cxxfunction by saving the dynamic shared objects
- cycle
- Significance of periodic expression pattern in time-series data
- cycleRtools
- Tools for Cycling Data Analysis
- cyclocomp
- Cyclomatic Complexity of R Code
- cycloids
- cycloids
- Cyclops
- Cyclic Coordinate Descent for Logistic, Poisson and Survival Analysis
- cymruservices
- Query 'Team Cymru' 'IP' Address, Autonomous System Number ('ASN'), Border Gateway Protocol ('BGP'), Bogon and 'Malware' Hash Data Services
- cyphid
- Cycle and Phase Identification for mastication data
- cystiSim
- Agent-Based Model for Taenia_solium Transmission and Control
- cytoDiv
- Cytometric diversity indices
- cytofkit
- cytofkit: an integrated mass cytometry data analysis pipeline
- CytoML
- GatingML interface for openCyto
- D2C
- Predicting Causal Direction from Dependency Features
- d3heatmap
- Interactive Heat Maps Using 'htmlwidgets' and 'D3.js'
- D3M
- Two Sample Test with Wasserstein Metric
- d3Network
- Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R
- D3partitionR
- Plotting D3 Hierarchical Plots in R and Shiny
- d3r
- 'd3.js' Utilities for R
- DAAG
- Data Analysis and Graphics Data and Functions
- DAAGbio
- Data Sets and Functions, for Demonstrations with Expression Arrays and Gene Sequences
- DAAGxtras
- Data Sets and Functions, supplementary to DAAG
- dad
- Three-Way Data Analysis Through Densities
- dada2
- Accurate, high-resolution sample inference from amplicon sequencing data
- dae
- Functions Useful in the Design and ANOVA of Experiments
- daewr
- Design and Analysis of Experiments with R
- daewr
- Design and Analysis of Experiments with R
- daff
- Diff, Patch and Merge for Data.frames
- dafs
- Data analysis for forensic scientists
- dagbag
- Learning directed acyclic graphs (DAGs) through bootstrap aggregating
- DAGGER
- Consensus genetic maps
- dagitty
- Graphical Analysis of Structural Causal Models
- dagitty
- Graphical Analysis of Structural Causal Models
- dagLogo
- dagLogo
- dagR
- R functions for directed acyclic graphs
- Daim
- Diagnostic accuracy of classification models.
- dairy
- Functions and models related to dairy production
- DAISIE
- Dynamical Assembly of Islands by Speciation, Immigration and Extinction
- DAKS
- Data Analysis and Knowledge Spaces
- DALY
- The DALY Calculator - Graphical User Interface for Probabilistic DALY Calculation in R
- dam
- Data Analysis Metabolomics
- daMA
- Efficient design and analysis of factorial two-colour microarray data
- DamiaNN
- Neural Network Numerai
- DAMisc
- Dave Armstrong's Miscellaneous Functions
- DAMisc
- Dave Armstrong's Miscellaneous Functions
- DAMOCLES
- Dynamic Assembly Model of Colonization, Local Extinction and Speciation
- dams
- Dams in the United States from the National Inventory of Dams (NID)
- DandEFA
- Dandelion Plot for R-Mode Exploratory Factor Analysis
- DanteR
- Proteomics data analysis tool
- DAPAR
- Tools for the Differential Analysis of Proteins Abundance with R
- darch
- Package for Deep Architectures and Restricted Boltzmann Machines
- Dark
- The Analysis of Dark Adaptation Data
- darksky
- Tools to Work with the Dark Sky API
- DART
- Denoising Algorithm based on Relevance network Topology
- darts
- Statistical Tools to Analyze Your Darts Game
- dashboard
- Interactive Data Visualization with D3.js
- DASiR
- Distributed Annotation System in R
- DatABEL
- File-Based Access to Large Matrices Stored on HDD in Binary Format
- datacheck
- Tools for Checking Data Consistency
- datacheckr
- Data Checking
- DataClean
- Data Cleaning
- DataCombine
- Tools for Easily Combining and Cleaning Data Sets
- datadr
- Divide and Recombine for Large, Complex Data
- DataExplorer
- Data Explorer
- dataframes2xls
- Write Data Frames to Xls Files
- datafsm
- Estimating Finite State Machine Models from Data
- DataLoader
- Import Multiple File Types
- datamap
- A system for mapping foreign objects to R variables and environments
- datamart
- Unified access to your data sources
- dataonderivatives
- Easily Source Publicly Available Data on Derivatives
- dataone
- R Interface to the DataONE REST API
- datapack
- A Flexible Container to Transport and Manipulate Data and Associated Resources
- datapasta
- RStudio Addins for Data Copy-Pasta
- dataQualityR
- Performs variable level data quality checks and generates summary statistics
- dataRetrieval
- Retrieval Functions for USGS and EPA Hydrologic and Water Quality Data
- datarobot
- DataRobot Predictive Modeling API
- Dataset
- Handling survey data in R. (official release)
- datastepr
- An Implementation of a SAS-Style Data Step
- data.table
- Extension of `data.frame`
- data.table
- Extension of data.frame
- data.tree
- General Purpose Hierarchical Data Structure
- datautils
- Support functions for packages VBmix, semisupKernelPCA, and patchPlot.
- dataview
- Data and Workspace Browser for Terminals
- date
- Functions for handling dates
- date
- Functions for handling dates
- DATforDCEMRI
- Deconvolution Analysis Tool for Dynamic Contrast Enhanced MRI
- dave
- Functions for "Data Analysis in Vegetation Ecology"
- DAVIDQuery
- Retrieval from the DAVID bioinformatics data resource into R
- Davies
- The Davies Quantile Function
- dawai
- Discriminant Analysis with Additional Information
- dbarts
- Discrete Bayesian Additive Regression Trees Sampler
- DBChIP
- Differential Binding of Transcription Factor with ChIP-seq
- dbConnect
- Provides a graphical user interface to connect with databases that use MySQL.
- dbEmpLikeGOF
- Goodness-of-fit and two sample comparison tests using sample entropy
- dbEmpLikeNorm
- Test for joint assessment of normality
- DBEST
- Detecting Breakpoints and Estimating Segments in Trend
- dbfaker
- A Tool to Ensure the Validity of Database Writes
- DBGSA
- methods of distance-based gene set functional enrichment analysis.
- dbhydroR
- 'DBHYDRO' Hydrologic and Water Quality Data
- DBI
- R Database Interface
- DBItest
- Testing 'DBI' Back Ends
- DBKGrad
- Discrete Beta Kernel Graduation of Mortality Data
- dblcens
- Compute the NPMLE of distribution from doubly censored data
- dbmss
- Distance-Based Measures of Spatial Structures
- dbscan
- Density Based Clustering of Applications with Noise (DBSCAN) and Related Algorithms
- dbstats
- Distance-Based Statistics
- DCchoice
- Analyzing Dichotomous Choice Contingent Valuation Data
- DCchoice
- Analyzing Dichotomous Choice Contingent Valuation Data
- dcemri
- A Package for Medical Image Analysis
- dcemriS4
- A Package for Medical Image Analysis (S4 implementation)
- dcemriS4
- A Package for Image Analysis of DCE-MRI (S4 Implementation)
- DCG
- Data Cloud Geometry (DCG): Using Random Walks to Find Community Structure in Social Network Analysis
- DCGL
- Differential Co-expression Analysis and Differential Regulation Analysis of Gene Expression Microarray Data
- dcGOR
- Analysis of Ontologies and Protein Domain Annotations
- dcGOR
- Analysis of Ontologies and Protein Domain Annotations
- dcGSA
- Distance-correlation based Gene Set Analysis for longitudinal gene expression profiles
- dChipIO
- Methods for Reading dChip Files
- dChipIO
- Methods for reading dChip files
- DChIPRep
- DChIPRep - Analysis of chromatin modification ChIP-Seq data with replication
- DCL
- Claims Reserving under the Double Chain Ladder Model
- dclone
- Data Cloning and MCMC Tools for Maximum Likelihood Methods
- dclone
- Data Cloning and MCMC Tools for Maximum Likelihood Methods
- DCluster
- Functions for the Detection of Spatial Clusters of Diseases
- DCluster
- Functions for the Detection of Spatial Clusters of Diseases
- DClusterm
- Model-based detection of disease clusters
- DCM
- Data Converter Module
- dcmle
- Hierarchical Models Made Easy with Data Cloning
- dcmr
- Attribute profile estimation using Diagnostic Classification Models and MCMC
- DCODE
- List Linear n-Peptide Constraints for Overlapping Protein Regions
- dCovTS
- Distance Covariance and Correlation for Time Series Analysis
- dcv
- Conventional Cross-validation statistics for climate-growth model
- ddalpha
- Depth-Based Classification and Calculation of Data Depth
- ddCt
- The ddCt Algorithm for the Analysis of Quantitative Real-Time PCR (qRT-PCR)
- DDD
- Diversity-Dependent Diversification
- ddeploy
- Wrapper for the Duke Deploy REST API
- ddepn
- Dynamic Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data.
- ddgraph
- Distinguish direct and indirect interactions with Graphical Modelling
- DDHFm
- Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays)
- DDIwR
- DDI with R
- DDIwR
- DDI with R
- ddpcr
- Analysis and Visualization of Droplet Digital PCR in R and on the Web
- ddR
- Distributed Data Structures in R
- DDRTree
- Learning Principal Graphs with DDRTree
- ddst
- Data Driven Smooth Tests
- deadband
- Statistical Deadband Algorithms Comparison
- DeadCanMove
- Assess how spatial roadkill patterns change with temporal sampling scheme
- deal
- Learning Bayesian Networks with Mixed Variables
- deamer
- Deconvolution density estimation with adaptive methods for a variable prone to measurement error
- debias
- Functions implementing MLE,its bias reduction for small samples and related issues
- deBInfer
- Bayesian Inference for Differential Equations
- debrowser
- debrowser: Interactive Differential Expresion Analysis Browser
- debug
- printf-style debugging
- debug
- MVB's debugger for R
- debugme
- Debug R Packages
- DECIDE
- DEComposition of Indirect and Direct Effects
- DECIPHER
- Tools for curating, analyzing, and manipulating biological sequences
- decision
- Statistical Decision Analysis
- DecisionCurve
- Calculate and Plot Decision Curves
- decisionSupport
- Quantitative Support of Decision Making under Uncertainty
- decode
- Differential Co-Expression and Differential Expression Analysis
- decoder
- Decode Coded Variables to Plain Text (and Vice Versa)
- decomp
- Various functions to quantify and decompose health inequalities
- decompr
- Global-Value-Chain Decomposition
- decon
- Deconvolution Estimation in Measurement Error Models
- DeconRNASeq
- Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data
- deconstructSigs
- Identifies Signatures Present in a Tumor Sample
- deconvolveR
- Empirical Bayes Estimation Strategies
- DeconWK
- Deconvolution by Weighted Kernels
- decUpdate
- Update of matrix decompositions
- DEDS
- Differential Expression via Distance Summary for Microarray Data
- Deducer
- A Data Analysis GUI for R
- DeducerAlpha
- Tools for aggregating scale items
- DeducerANOVA
- Factorial ANOVA for Deducer
- DeducerExtras
- Additional dialogs and functions for Deducer
- DeducerPlugInExample
- Deducer Plug-in Example
- DeducerPlugInScaling
- Reliability and factor analysis plugin
- DeducerPlugInScaling
- Reliability and factor analysis plugin
- DeducerPSY220
- PSY220 Deducer Plug-In
- DeducerReshape
- Converts data frames from wide to long and long to wide formats
- DeducerRichOutput
- Rich Output Display for Deducer
- DeducerSpatial
- Deducer for spatial data analysis
- DeducerSpatial
- Deducer for spatial data analysis
- DeducerSurvival
- Add Survival Dialogue to Deducer
- DeducerText
- Deducer GUI for Text Data
- DeducerText
- Deducer GUI for Text Data
- deducorrect
- Deductive Correction, Deductive Imputation, and Deterministic Correction
- deductive
- Data Correction and Imputation Using Deductive Methods
- DeepBlueR
- DeepBlueR
- deepboost
- Deep Boosting Ensemble Modeling
- DeepCNV
- Exploiting Normal Contamination to Infer Copy Number from Deep Sequencing
- deeplearning
- An Implementation of Deep Neural Network for Regression and Classification
- deepnet
- deep learning toolkit in R
- deepnlp
- Deep Learning Neural Network Models (RNN, CNN, etc) in NLP
- DEEPR
- Dirichlet-multinomial Evolutionary Event Profile Randomization (DEEPR) test
- deepSNV
- Detection of subclonal SNVs in deep sequencing data.
- DEFFbinary
- Compute the design effect for correlated binary data
- DEFormats
- Differential gene expression data formats converter
- deformula
- Integration of One-Dimensional Functions with Double Exponential Formulas
- degenes
- Detection of differentially expressed genes.
- DEGraph
- Two-sample tests on a graph
- degreenet
- Models for Skewed Count Distributions Relevant to Networks
- DEGreport
- Report of DEG analysis
- DEGseq
- Identify Differentially Expressed Genes from RNA-seq data
- Delaporte
- Statistical Functions for the Delaporte Distribution
- deldir
- Delaunay Triangulation and Dirichlet (Voronoi) Tessellation
- delftfews
- delftfews R extensions
- DeLorean
- Estimates Pseudotimes for Single Cell Expression Data
- delt
- Estimation of Multivariate Densities Using Adaptive Partitions
- deltaGseg
- deltaGseg
- deltaPlotR
- Identification of dichotomous differential item functioning (DIF) using Angoff's Delta Plot method
- DeMAND
- DeMAND
- Demerelate
- Functions to Calculate Relatedness on Diploid Genetic Data
- DEMEtics
- Evaluating the genetic differentiation between populations based on Gst and D values.
- demi
- Differential Expression from Multiple Indicators
- deming
- Deming, Thiel-Sen and Passing-Bablock Regression
- DeMix
- Deconvolution Models for Mixed Transcriptomes from Heterogeneous Tumor Samples
- DeMixSampleData
- 'DeMix' Sample Data
- demography
- Forecasting mortality, fertility, migration and population data
- demoKde
- Kernel Density Estimation for Demonstration Purposes
- demoniche
- demoniche - spatial population dynamics
- DEMOVA
- DEvelopment (of Multi-Linear QSPR/QSAR) MOdels VAlidated using Test Set
- dendextend
- Extending R's Dendrogram Functionality
- dendextendRcpp
- Faster Dendrogram Manipulation using 'Rcpp'
- dendroextras
- Extra functions to cut, label and colour dendrogram clusters
- dendrometeR
- Analyzing Dendrometer Data
- Dendrometry
- Decipher Barr & Stroud FP-15 from STX Files
- DendSer
- Dendrogram seriation: ordering for visualisation
- dendsort
- Modular Leaf Ordering Methods for Dendrogram Nodes
- DengueParmEst
- Parameter estimates (and real-time prediction) of a single dengue outbreak
- DengueRT
- Parameter Estimates and Real-Time Prediction of a Single Dengue Outbreak
- DengueRT
- Parameter Estimates and Real-Time Prediction of a Single Dengue Outbreak
- denoiseR
- Regularized Low Rank Matrix Estimation
- denovolyzeR
- Statistical Analyses of De Novo Genetic Variants
- denpro
- Visualization of Multivariate Functions, Sets, and Data
- densityClust
- Clustering by Fast Search and Find of Density Peaks
- Density.T.HoldOut
- Density.T.HoldOut: Non-combinatorial T-estimation Hold-Out for density estimation
- DensParcorr
- Dens-Based Method for Partial Correlation Estimation in Large Scale Brain Networks
- densratio
- Density Ratio Estimation
- denstrip
- Density strips and other methods for compactly illustrating distributions
- DEoptim
- Global Optimization by Differential Evolution
- DEoptimR
- Differential Evolution Optimization in Pure R
- DEoptimR
- Differential Evolution Optimization in Pure R
- depend.truncation
- Statistical Inference for Parametric and Semiparametric Models Based on Dependently Truncated Data
- DEploid
- Deconvolute Mixed Genomes with Unknown Proportions
- depmix
- Dependent Mixture Models
- depmix
- Dependent Mixture Models
- depmixS4
- Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4
- depmixS4
- Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4
- depth
- Depth functions tools for multivariate analysis
- depth.plot
- Multivariate Analogy of Quantiles
- depthproc
- depthproc
- DepthProc
- Statistical Depth Functions for Multivariate Analysis
- DepthProc
- Statistical Depth Functions for Multivariate Analysis
- depthTools
- Depth Tools Package
- dequer
- Stacks, Queues, and 'Deques' for R
- derfinder
- Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach
- derfinderHelper
- derfinder helper package
- derfinderPlot
- Plotting functions for derfinder
- Deriv
- Symbolic Differentiation
- derivmkts
- Functions and R Code to Accompany Derivatives Markets
- desc
- Manipulate DESCRIPTION Files
- descomponer
- Seasonal Adjustment by Frequency Analysis
- descr
- Descriptive Statistics
- DescribeDisplay
- An Interface to the DescribeDisplay GGobi Plugin
- describer
- Describe Data in R Using Common Descriptive Statistics
- DescTools
- Tools for Descriptive Statistics
- deseasonalize
- Optimal deseasonalization for geophysical time series using AR fitting
- DESeq
- Differential gene expression analysis based on the negative binomial distribution
- DESeq2
- Differential gene expression analysis based on the negative binomial distribution
- designGG
- Computational tool for designing genetical genomics experiments.
- designGLMM
- Finding Optimal Block Designs for a Generalised Linear Mixed Model
- designmatch
- Construction of Optimally Matched Samples for Randomized Experiments and Observational Studies that are Balanced and Representative by Design
- desiR
- Desirability Functions for Ranking, Selecting, and Integrating Data
- desirability
- Function Optimization and Ranking via Desirability Functions
- desirability
- Desirabiliy Function Optimization and Ranking
- desire
- Desirability functions in R
- desire
- Desirability functions
- DESnowball
- Bagging with Distance-based Regression for Differential Gene Expression Analyses
- deSolve
- Solvers for Initial Value Problems of Differential Equations (ODE, DAE, DDE)
- deSolve
- Solvers for Initial Value Problems of Differential Equations ('ODE', 'DAE', 'DDE')
- DESP
- Estimation of Diagonal Elements of Sparse Precision-Matrices
- desplot
- Plotting Field Plans for Agricultural Experiments
- destiny
- Creates diffusion maps
- DEsubs
- DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments
- detect
- Analyzing Wildlife Data with Detection Error
- detect
- Analyzing Wildlife Data with Detection Error
- detector
- Detect Data Containing Personally Identifiable Information
- deTestSet
- Testset for Differential Equations
- deTestSet
- Testset for Differential Equations
- DetMCD
- Implementation of the DetMCD Algorithm (Robust and Deterministic Estimation of Location and Scatter)
- DetR
- Suite of Deterministic and Robust Algorithms for Linear Regression
- detrendeR
- Start the detrendeR Graphical User Interface (GUI)
- DetSel
- A computer program to detect markers responding to selection
- DetSel
- A computer program to detect markers responding to selection
- detzrcr
- Compare Detrital Zircon Suites
- devEMF
- EMF Graphics Output Device
- Devore7
- Data sets from Devore's "Prob and Stat for Eng (7th ed)"
- devRate
- Quantify Relationship Between Developmental Rate and Temperature in Ectotherms
- devtools
- Tools to Make Developing R Packages Easier
- DEXSeq
- Inference of differential exon usage in RNA-Seq
- dexus
- DEXUS - Identifying Differential Expression in RNA-Seq Studies with Unknown Conditions or without Replicates
- df2json
- Convert a dataframe to JSON
- dfcomb
- Phase I/II Adaptive Dose-Finding Design for Combination Studies
- dfcrm
- Dose-finding by the continual reassessment method
- dfdb
- Access Data Tables in a SQLite Data Base as Pseudo-Dataframes
- dfdb.RODBC
- Access Data Tables in an RODBC Data Base as Pseudo-Dataframes
- dfexplore
- Explore data.frames by plotting NA and classes of each variable
- DFIT
- Differential Functioning of Items and Tests
- dfmta
- Phase I/II Adaptive Dose-Finding Design for MTA
- dfoptim
- Derivative-free Optimization
- dfoptim
- Derivative-Free Optimization
- DFP
- Gene Selection
- dfphase1
- Phase I Control Charts (with Emphasis on Distribution-Free Methods)
- dfpk
- A Bayesian Dose-Finding Design using Pharmacokinetics(PK) for Phase I Clinical Trials
- dga
- Capture-Recapture Estimation using Bayesian Model Averaging
- dGAselID
- Genetic Algorithm with Incomplete Dominance for Feature Selection
- DGCA
- Differential Gene Correlation Analysis
- dggridR
- Discrete Global Grids for R
- dglars
- Differential Geometric LARS (dgLARS) method
- dglm
- Double Generalized Linear Models
- dgmb
- Simulating Data for PLS Mode B Structural Models
- dgof
- Discrete Goodness-of-Fit Tests
- dgof
- Discrete Goodness-of-Fit Tests
- DHARMa
- Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression Models
- dhga
- Differential Hub Gene Analysis
- dhglm
- Double Hierarchical Generalized Linear Models
- dHSIC
- Independence Testing via Hilbert Schmidt Independence Criterion
- diagis
- Diagnostic Plot and Multivariate Summary Statistics of Weighted Samples from Importance Sampling
- DiagnosisMed
- Diagnostic test accuracy evaluation for health professionals.
- diagonals
- Block Diagonal Extraction or Replacement
- diagram
- Functions for Visualising Simple Graphs (Networks), Plotting Flow Diagrams
- diagram
- Functions for visualising simple graphs (networks), plotting flow diagrams
- DiagrammeR
- Create Graph Diagrams and Flowcharts Using R
- DiagrammeRsvg
- Export DiagrammeR Graphviz Graphs as SVG
- DiagTest3Grp
- Diagnostic test summary measures for three ordinal groups
- DiallelAnalysisR
- Diallel Analysis with R
- diaplt
- Beads Summary Plot of Ranges
- dice
- Calculate probabilities of various dice-rolling events
- DiceDesign
- Designs of Computer Experiments
- DiceEval
- Construction and Evaluation of Metamodels
- DiceKriging
- Kriging Methods for Computer Experiments
- DiceOptim
- Kriging-Based Optimization for Computer Experiments
- DiceView
- Plot methods for computer experiments design and surrogate.
- dichromat
- Color Schemes for Dichromats
- dichromat
- Color Schemes for Dichromats
- dicionariosIBGE
- Dictionaries for reading microdata surveys from IBGE
- DICOM
- Import medical imaging data using the DICOM Standard
- DidacticBoost
- A Simple Implementation and Demonstration of Gradient Boosting
- dielectric
- Defines some physical constants and dielectric functions commonly used in optics, plasmonics.
- DierckxSpline
- R companion to "Curve and Surface Fitting with Splines"
- diezeit
- R Interface to the ZEIT ONLINE Content API
- DIFboost
- Detection of Differential Item Functioning (DIF) in Rasch Models by Boosting Techniques
- Difdtl
- Difference of Two Precision Matrices Estimation
- DiffBind
- Differential Binding Analysis of ChIP-Seq peak data
- DiffCorr
- Analyzing and Visualizing Differential Correlation Networks in Biological Data
- diffdepprop
- Calculates Confidence Intervals for two Dependent Proportions
- diffEq
- Functions from the book Solving Differential Equations in R
- diffEq
- Functions from the book Solving Differential Equations in R
- diffeR
- Metrics of Difference for Comparing Pairs of Maps
- diffGeneAnalysis
- Performs differential gene expression Analysis
- diffHic
- Differential Analyis of Hi-C Data
- diffIRT
- Diffusion IRT Models for Response and Response Time Data
- DiffLogo
- DiffLogo: A comparative visualisation of sequence motifs
- diffloop
- Differential DNA loop calling from ChIA-PET data
- diffobj
- Diffs for R Objects
- diffr
- Display Differences Between Two Files using Codediff Library
- diffractometry
- Baseline identification and peak decomposition for x-ray diffractograms
- diffrprojects
- Projects for Text Version Comparison and Analytics in R
- diffrprojectswidget
- Visualization for 'diffrprojects'
- diffusionMap
- Diffusion map
- DiffusionRgqd
- Inference and Analysis for Generalized Quadratic Diffusions
- DiffusionRimp
- Inference and Analysis for Diffusion Processes via Data Imputation and Method of Lines
- DiffusionRjgqd
- Inference and Analysis for Jump Generalized Quadratic Diffusions
- diffusr
- Network Diffusion Algorithms
- DIFlasso
- A Penalty Approach to Differential Item Functioning in Rasch Models
- difNLR
- Detection of Dichotomous Differential Item Functioning (DIF) by Non- Linear Regression Function
- difR
- Collection of Methods to Detect Dichotomous Differential Item Functioning (DIF)
- DIFtree
- Item Focused Trees for the Identification of Items in Differential Item Functioning
- digest
- Create Compact Hash Digests of R Objects
- digest
- Create cryptographic hash digests of R objects
- diggit
- Inference of Genetic Variants Driving Cellular Phenotypes
- Digiroo2
- An application programming interface for generating null models of social contacts based on individuals' space use
- digitalPCR
- Estimate Copy Number for Digital PCR
- digitize
- Use Data from Published Plots in R
- digitize
- digitize : a plot digitizer in R
- dils
- Data-Informed Link Strength. Combine multiple-relationship networks into a single weighted network. Impute (fill-in) missing network links.
- DIME
- DIME (Differential Identification using Mixture Ensemble)
- dina
- Bayesian Estimation of DINA Model
- dinamic
- DiNAMIC A Method To Analyze Recurrent DNA Copy Number Aberrations in Tumors
- diptest
- Hartigan's Dip Test Statistic for Unimodality - Corrected
- DIRECT
- Bayesian Clustering of Multivariate Data Under the Dirichlet-Process Prior
- Directional
- Directional Statistics
- directlabels
- Direct labels for multicolor plots in lattice or ggplot2
- directlabels
- Direct Labels for Multicolor Plots
- Director
- A dynamic visualization tool of multi-level data
- directPA
- Direction Analysis for Pathways and Kinases
- DirectStandardisation
- Adjusted Means and Proportions by Direct Standardisation
- dirichlet
- Dirichlet and Generalized Dirichlet Distribution functions
- DirichletMultinomial
- Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
- DirichletReg
- Dirichlet Regression in R
- dirmult
- Estimation in Dirichlet-Multinomial distribution.
- dirt
- soil science related functions
- Disake
- Discrete associated kernel estimators
- discgolf
- Discourse 'API' Client
- disclap
- Discrete Laplace Exponential Family
- disclapmix
- Discrete Laplace Mixture Inference using the EM Algorithm
- DiscML
- DiscML: An R package for estimating evolutionary rates of discrete characters using maximum likelihood
- discretecdAlgorithm
- Coordinate-Descent Algorithm for Discrete Data
- DiscreteInverseWeibull
- Discrete Inverse Weibull Distribution
- DiscreteLaplace
- Discrete Laplace Distributions
- discreteMTP
- Multiple testing procedures for discrete test statistics
- discreteRV
- Create and Manipulate Discrete Random Variables
- DiscreteWeibull
- Discrete Weibull Distributions (Type 1 and 3)
- discretization
- Data preprocessing, discretization for classification.
- discrimARTs
- Discrimination of Alternative Reproductive Tactics (ARTs).
- DiscriMiner
- Tools of the Trade for Discriminant Analysis
- discSurv
- Discrete Time Survival Analysis
- diseasemapping
- Modelling Spatial Variation in Disease Risk for Areal Data
- diseasemapping
- Modelling Spatial Variation in Disease Risk for Areal Data
- diseasemappingDevel
- Functions to compliment diseasemapping
- DisimForMixed
- Calculate Dissimilarity Matrix for Dataset with Mixed Attributes
- diskImageR
- A Pipeline to Analyze Resistance and Tolerance from Drug Disk Diffusion Assays
- dismo
- Species Distribution Modeling
- dismo
- Species Distribution Modeling
- disp2D
- 2D Hausdorff and Simplex Dispersion Orderings
- disparityfilter
- Disparity Filter Algorithm for Weighted Networks
- displayHTS
- displayHTS
- dispmod
- Dispersion models
- disposables
- Create Disposable R Packages for Testing
- dissUtils
- Utilities for making pairwise comparisons of multivariate data
- Distance
- Distance Sampling Detection Function and Abundance Estimation
- distance.sample.size
- Calculates Study Size Required for Distance Sampling
- DistatisR
- DiSTATIS Three Way Metric Multidimensional Scaling
- distcomp
- Computations over Distributed Data without Aggregation
- distdrawr
- Download Occurrence Data of Vascular Plants in Germany from the FLORKART Database
- distfree.cr
- Distribution-free confidence region (distfree.cr)
- distillery
- Method Functions for Confidence Intervals and to Distill Information from an Object
- distory
- Distance Between Phylogenetic Histories
- distr
- Object Oriented Implementation of Distributions
- distr
- Object Oriented Implementation of Distributions
- distrDoc
- Documentation for 'distr' Family of R Packages
- distrDoc
- Documentation for 'distr' Family of R Packages
- distrEllipse
- S4 Classes for Elliptically Contoured Distributions
- distrEllipse
- S4 Classes for Elliptically Contoured Distributions
- distrEx
- Extensions of Package 'distr'
- distrEx
- Extensions of Package 'distr'
- DistributionUtils
- Distribution Utilities
- DistributionUtils
- Distribution Utilities
- distrMod
- Object Oriented Implementation of Probability Models
- distrMod
- Object Oriented Implementation of Probability Models
- distrom
- Distributed Multinomial Regression
- distrRmetrics
- Distribution Classes for Distributions from Rmetrics
- distrRmetrics
- Distribution Classes for Distributions from Rmetrics
- distrSim
- Simulation Classes Based on Package 'distr'
- distrSim
- Simulation Classes Based on Package 'distr'
- distrTeach
- Extensions of Package 'distr' for Teaching Stochastics/Statistics in Secondary School
- distrTeach
- Extensions of Package 'distr' for Teaching Stochastics/Statistics in Secondary School
- distrTEst
- Estimation and Testing Classes Based on Package 'distr'
- distrTEst
- Estimation and Testing Classes Based on Package 'distr'
- disttree
- Trees and Forests for Distributional Regression
- divagis
- Provides tools for quality checks of georeferenced plant species accessions.
- DivE
- Diversity Estimator
- diveMove
- Dive analysis and calibration
- diveMove
- Dive Analysis and Calibration
- diverse
- Diversity Measures for Complex Systems
- diversitree
- Comparative 'Phylogenetic' Analyses of Diversification
- diveRsity
- A Comprehensive, General Purpose Population Genetics Analysis Package
- DiversityOccupancy
- Building Diversity Models from Multiple Species Occupancy Models
- DiversitySampler
- Functions for re-sampling a community matrix to compute diversity indices at different sampling levels.
- DivMelt
- HRM Diversity Assay Analysis Tool
- divo
- Tools for Analysis of Diversity and Similarity in Biological Systems
- dixon
- Nearest Neighbour Contingency Table Analysis
- DJL
- Distance Measure Based Judgment and Learning
- dkDNA
- Diffusion Kernels on a Set of Genotypes
- dks
- The double Kolmogorov-Smirnov package for evaluating multiple testing procedures.
- DLASSO
- Implementation of Differentiable Lasso Penalty in Linear Models
- dlm
- Bayesian and Likelihood Analysis of Dynamic Linear Models
- dlm
- Bayesian and Likelihood Analysis of Dynamic Linear Models
- dlmap
- Detection Localization Mapping for QTL
- dlmodeler
- Generalized Dynamic Linear Modeler
- DLMtool
- Data-Limited Methods Toolkit
- dlnm
- Distributed Lag Non-Linear Models
- dlrm
- Dynamic Linear Regression Model
- dlsem
- Distributed-Lag Structural Equation Modelling
- dlstats
- Download Stats of R Packages
- dma
- Dynamic Model Averaging
- dml
- Distance Metric Learning in R
- dmm
- Dyadic Mixed Model for Pedigree Data
- dMod
- Dynamic Modeling and Parameter Estimation in ODE Models
- DMR
- Delete or Merge Regressors for linear model selection.
- DMRcaller
- Differentially Methylated Regions caller
- DMRcate
- Methylation array and sequencing spatial analysis methods
- DMRforPairs
- DMRforPairs: identifying Differentially Methylated Regions between unique samples using array based methylation profiles
- DMRMark
- DMR Detection by Non-Homogeneous Hidden Markov Model from Methylation Array Data
- dmt
- Dependency Modeling Toolkit
- dmt
- Dependency Modeling Toolkit
- DMwR
- Functions and data for "Data Mining with R"
- DMwR2
- Functions and Data for the Second Edition of "Data Mining with R"
- dna
- Differential Network Analysis
- DNABarcodes
- A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments
- DNAcopy
- DNA copy number data analysis
- dnamatch
- A procedure for large scale contamination search
- DNAprofiles
- DNA Profiling Evidence Analysis
- DNAseqtest
- Generating and Testing DNA Sequences
- DNaseR
- DNase I footprinting analysis of DNase-seq data
- DNAshapeR
- High-throughput prediction of DNA shape features
- DNAtools
- Tools for Analysing Forensic Genetic DNA Data
- dnc
- Dynamic Network Clustering
- DnE
- Distribution and Equation
- dnet
- Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology
- dnet
- Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology
- DNMF
- Discriminant Non-Negative Matrix Factorization
- DOBAD
- Analysis of Discretely Observed Linear Birth-and-Death(-and-Immigration) Markov Chains
- doBy
- Groupwise Statistics, LSmeans, Linear Contrasts, Utilities
- docopt
- Command-Line Interface Specification Language
- docopulae
- Optimal Designs for Copula Models
- documair
- Automatic Documentation for R packages
- documair
- Automatic Documentation for R packages
- docxtractr
- Extract Data Tables and Comments from Microsoft Word Documents
- Dodge
- Functions for Acceptance Sampling Ideas originated by H.F. Dodge
- DODR
- Detection of Differential Rhythmicity
- DoE.base
- Full Factorials, Orthogonal Arrays and Base Utilities for DoE Packages
- DoE.wrapper
- Wrapper package for design of experiments functionality
- doFuture
- Foreach Parallel Adaptor using the Future API of the 'future' Package
- domainsignatures
- Geneset enrichment based on InterPro domain signatures
- doMC
- Foreach Parallel Adaptor for 'parallel'
- doMC
- Foreach Parallel Adaptor for 'parallel'
- Dominance
- ADI (Average Dominance Index), Social Network Graphs with Dual Directions, and Music Notation Graph
- domino
- R Console Bindings for the 'Domino Command-Line Client'
- doMPI
- Foreach parallel adaptor for the Rmpi package
- doParallel
- Foreach Parallel Adaptor for the 'parallel' Package
- doParallel
- Foreach Parallel Adaptor for the 'parallel' Package
- doppelgangR
- Identify likely duplicate samples from genomic or meta-data
- DOQTL
- Genotyping and QTL Mapping in DO Mice
- doRedis
- Foreach parallel adapter for the rredis package
- doRNG
- Generic Reproducible Parallel Backend for foreach Loops
- doRNG
- Generic Reproducible Parallel Backend for foreach Loops
- DOSE
- Disease Ontology Semantic and Enrichment analysis
- DoseFinding
- Planning and Analyzing Dose Finding Experiments
- doSMP
- Foreach parallel adaptor for the revoIPC package
- doSNOW
- Foreach Parallel Adaptor for the 'snow' Package
- doSNOW
- Foreach Parallel Adaptor for the 'snow' Package
- dosresmeta
- Performing Multivariate Dose-Response Meta-Analysis
- dostats
- Compute Statistics Helper Functions
- DOT
- Render and Export DOT Graphs in R
- DoTC
- Distribution of Typicality Coefficients
- dotCall64
- Enhanced Foreign Function Interface Supporting Long Vectors
- dotenv
- Load Environment Variables from '.env'
- dotwhisker
- Dot-and-Whisker Plots of Regression Results
- DoubleCone
- Test against parametric regression function
- DoubleExpSeq
- Differential Exon Usage Test for RNA-Seq Data via Empirical Bayes Shrinkage of the Dispersion Parameter
- DOvalidation
- Local Linear Hazard Estimation with Do-Validated and Cross-Validated Bandwidths
- Dowd
- Functions Ported from 'MMR2' Toolbox Offered in Kevin Dowd's Book Measuring Market Risk
- Dowd
- Functions Ported from 'MMR2' Toolbox Offered in Kevin Dowd's Book Measuring Market Risk
- downloader
- Download Files over HTTP and HTTPS
- downscale
- Downscaling Species Occupancy
- downscale
- Downscaling Species Occupancy
- downsize
- A Tool to Downsize Large Workflows for Testing
- dpa
- Dynamic Path Approach
- DPBBM
- Dirichlet Process Beta-Binomial Mixture
- dpcR
- Digital PCR Analysis
- dpeaqms
- Differential Protein Expression Analysis using Quantitative Mass Spectrometry Data (dpeaqms)
- dpglasso
- Primal Graphical Lasso
- dplR
- Dendrochronology Program Library in R
- dplR
- Dendrochronology Program Library in R
- dplRCon
- Concordance for Dendroclimatology
- dplyr
- A Grammar of Data Manipulation
- dpmixsim
- Dirichlet Process Mixture model simulation for clustering and image segmentation
- dpmixsim
- Dirichlet Process Mixture model simulation for clustering and image segmentation
- dpmr
- Data Package Manager for R
- DPpackage
- Bayesian nonparametric modeling in R
- dprep
- Data Pre-Processing and Visualization Functions for Classification
- dr
- Methods for Dimension Reduction for Regression
- dr
- Methods for Dimension Reduction for Regression
- drat
- Drat R Archive Template
- drawExpression
- Visualising R syntax through graphics
- drawExpression
- Visualising R syntax through graphics
- DRaWR
- Discriminative Random Walk with Restart
- DrBats
- Data Representation: Bayesian Approach That's Sparse
- drc
- Analysis of Dose-Response Curves
- dream
- DiffeRential Evolution Adaptive Metropolis
- DREGAR
- Regularized Estimation of Dynamic Linear Regression in the Presence of Autocorrelated Residuals (DREGAR)
- drfit
- Dose-Response Data Evaluation
- drgee
- Doubly Robust Generalized Estimating Equations
- DrillR
- R Driver for Apache Drill
- DRIMSeq
- Differential splicing and sQTL analyses with Dirichlet-multinomial model in RNA-Seq
- DRIP
- Discontinuous Regression and Image Processing
- DriverNet
- Drivernet: uncovering somatic driver mutations modulating transcriptional networks in cancer
- drLumi
- Multiplex Immunoassays Data Analysis
- drm
- Regression and association models for repeated categorical data
- drmdel
- Dual Empirical Likelihood Inference under Density Ratio Models in the Presence of Multiple Samples
- dropR
- Analyze Drop Out of an Experiment or Survey
- drought
- Tools for Drought Modeling and Assessment
- DRR
- Dimensionality Reduction via Regression
- drsmooth
- Dose-Response Modeling with Smoothing Splines
- DrugClust
- Implementation of a Machine Learning Framework for Predicting Drugs Side Effects
- DrugVsDisease
- Comparison of disease and drug profiles using Gene set Enrichment Analysis
- ds
- Descriptive Statistics
- dsample
- Discretization-Based Direct Random Sample Generation
- dsample
- Discretization-Based Direct Random Sample Generation
- DSBayes
- Bayesian subgroup analysis in clinical trials
- dse
- Dynamic Systems Estimation (Time Series Package)
- dse
- Dynamic Systems Estimation (Time Series Package)
- dse1
- DSE (unbundled transition package).
- dse2
- DSE (unbundled transition package).
- dSimer
- Integration of Disease Similarity Methods
- dsinr
- Functions and datasets for the book "Data Science in R"
- DSL
- Distributed Storage and List
- DSL
- Distributed Storage and List
- dslice
- Dynamic Slicing
- dsm
- Density Surface Modelling of Distance Sampling Data
- dsmodels
- A Language to Facilitate the Creation and Visualization of Two- Dimensional Dynamical Systems
- DSpat
- Spatial Modelling for Distance Sampling Data
- DSS
- Dispersion shrinakge for sequencing data.
- DSsim
- Distance Sampling Simulations
- dst
- Using Dempster-Shafer Theory
- DstarM
- Analyze Two Choice Reaction Time Data with the D*M Method
- DStree
- Recursive Partitioning for Discrete-Time Survival Trees
- DSviaDRM
- Exploring Disease Similarity in Terms of Dysfunctional Regulatory Mechanisms
- DT
- A Wrapper of the JavaScript Library 'DataTables'
- DTA
- Dynamic Transcriptome Analysis
- dtables
- Simplifying Descriptive Frequencies and Statistics
- DTComPair
- Comparison of Binary Diagnostic Tests in a Paired Study Design
- DTDA
- Doubly truncated data analysis
- dti
- Analysis of Diffusion Weighted Imaging (DWI) Data
- DTK
- Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted for Unequal Variances and Unequal Sample Sizes
- DTMCPack
- Suite of functions related to discrete-time discrete-state Markov Chains
- dtplyr
- Data Table Back-End for 'dplyr'
- DTR
- Estimation and Comparison of Dynamic Treatment Regimes
- DTRlearn
- Learning Algorithms for Dynamic Treatment Regimes
- DTRreg
- DTR Estimation and Inference via G-Estimation, Dynamic WOLS, and Q-Learning
- dtt
- Discrete Trigonometric Transforms
- dtw
- Dynamic time warping algorithms
- dtw
- Dynamic Time Warping Algorithms
- dtwclust
- Time Series Clustering Along with Optimizations for the Dynamic Time Warping Distance
- dtwSat
- Time-Weighted Dynamic Time Warping for Satellite Image Time Series Analysis
- dualKS
- Dual KS Discriminant Analysis and Classification
- dualScale
- Dual Scaling Analysis of Multiple Choice Data
- dummies
- Create dummy/indicator variables flexibly and efficiently
- dummy
- A dummy package to ask R-Forge to install packages that I need
- dummy
- Automatic Creation of Dummies with Support for Predictive Modeling
- DunnettTests
- Software implementation of step-down and step-up Dunnett test procedures
- dunn.test
- Dunn's Test of Multiple Comparisons Using Rank Sums
- DupChecker
- a package for checking high-throughput genomic data redundancy in meta-analysis
- dupiR
- Bayesian inference from count data using discrete uniform priors
- dupRadar
- Assessment of duplication rates in RNA-Seq datasets
- dvfBm
- Discrete variations of a fractional Brownian motion
- DVHmetrics
- Analyze Dose-Volume Histograms and Check Constraints
- dvn
- Access to Dataverse 3 APIs
- DWD
- DWD implementation based on A IPM SOCP solver
- DWreg
- Parametric Regression for Discrete Response
- dyebias
- The GASSCO method for correcting for slide-dependent gene-specific dye bias
- dygraphs
- Interface to 'Dygraphs' Interactive Time Series Charting Library
- DYM
- Did You Mean?
- dyn
- Time Series Regression
- DynamicDistribution
- Dynamically visualized probability distributions and their moments
- dynamicGraph
- dynamicGraph
- dynamicTreeCut
- Methods for Detection of Clusters in Hierarchical Clustering Dendrograms
- dynatopmodel
- Implementation of the Dynamic TOPMODEL Hydrological Model
- dynaTree
- Dynamic Trees for Learning and Design
- dynBiplotGUI
- Full Interactive GUI for Dynamic Biplot in R
- DynClust
- Denoising and clustering for dynamical image sequence (2D or 3D)+T
- dynCorr
- Dynamic Correlation Package
- DynDoc
- Dynamic document tools
- dynetNLAResistance
- Resisting Neighbor Label Attack in a Dynamic Network
- dynia
- Fit Dynamic Intervention Model
- dynlm
- Dynamic Linear Regression
- DynNom
- Dynamic Nomograms for Linear, Generalized Linear and Proportional Hazard Models
- dynOmics
- Fast Fourier Transform to Identify Associations Between Time Course Omics Data
- dynpanel
- Dynamic Panel Data Models
- dynpred
- Companion Package to "Dynamic Prediction in Clinical Survival Analysis"
- dynr
- Dynamic Modeling in R
- dynRB
- Dynamic Range Boxes
- dynsim
- Dynamic Simulations of Autoregressive Relationships
- dynsurv
- Dynamic Models for Survival Data
- DynTxRegime
- Methods for Estimating Dynamic Treatment Regimes
- DynTxRegime
- Methods for Estimating Dynamic Treatment Regimes
- DySeq
- Functions for Dyadic Sequence Analyses
- e1071
- Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien
- e1071
- Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien
- eaf
- Plots of the Empirical Attainment Function
- eAnalytics
- Dynamic Web-Based Analytics for the Energy Industry
- earlywarnings
- Early Warning Signals Toolbox for Detecting Critical Transitions in Timeseries
- earlywarnings
- Early Warning Signals Toolbox for Detecting Critical Transitions in Timeseries
- earth
- Multivariate Adaptive Regression Splines
- earthmovdist
- Wrapper to the Emd-L1 library by Haibin Ling and Kazunori Okada
- earthtones
- Derive a Color Palette from a Particular Location on Earth
- EasyABC
- Efficient Approximate Bayesian Computation Sampling Schemes
- EasyABC
- Efficient Approximate Bayesian Computation Sampling Schemes
- easyanova
- Analysis of variance and other important complementary analyzes
- easydb
- Generic S3 Classes for Simple Database Interfaces
- easyformatr
- Tools for Building R Formats
- EasyHTMLReport
- EasyHTMLReport
- EasyMARK
- Utility functions for working with mark-recapture data.
- easynls
- Easy nonlinear model
- easypackages
- Easy Loading and Installing of Packages
- easypower
- Sample Size Estimation for Experimental Designs
- easyPubMed
- Search and Retrieve Scientific Publication Records from Pubmed
- EasyqpcR
- EasyqpcR for low-throughput real-time quantitative PCR data analysis
- easyreg
- Easy Regression
- easyRNASeq
- Count summarization and normalization for RNA-Seq data
- easyrodbcaccess
- Simple Database Interface for SQLite, MySQL and MS Access
- easyrodbcexcel
- Simple database interface for RODBC Excel.
- easyrodbcmysql
- Simple Database Interface for MySQL
- EasyStrata
- Evaluation of stratified genome-wide association meta-analysis results
- easyVerification
- Ensemble Forecast Verification for Large Data Sets
- eat
- eat
- eatData
- eatData
- eatDesign
- eatDesign
- eatDev
- eatDev
- eatGet
- eatGet
- eatModel
- eatModel
- eatPrep
- Prepare Data for IRT Analyses
- eatRep
- eatRep
- eatRest
- eatRest
- eatTools
- eatTools
- eatTrend
- Estimate National Trends in International Large-Scale Assessments
- eba
- Elimination-by-Aspects Models
- ebal
- Entropy reweighting to create balanced samples
- EBarrays
- Unified Approach for Simultaneous Gene Clustering and Differential Expression Identification
- EBASS
- Sample Size Calculation Method for Cost-Effectiveness Studies Based on Expected Value of Perfect Information
- EbayesThresh
- Empirical Bayes Thresholding and Related Methods
- EBcoexpress
- EBcoexpress for Differential Co-Expression Analysis
- ebdbNet
- Empirical Bayes Estimation of Dynamic Bayesian Networks
- EBEN
- Empirical Bayesian Elastic Net
- ebGenotyping
- Genotyping and SNP Detection using Next Generation Sequencing Data
- EBglmnet
- Empirical Bayesian Lasso and Elastic Net Methods for Generalized Linear Models
- EBImage
- Image processing and analysis toolbox for R
- EBImage
- DUMMY DUMMY DUMMY
- ebimetagenomics
- EBI Metagenomics Portal
- ebimetagenomics
- EBI Metagenomics Portal
- EBMAforecast
- Ensemble BMA Forecasting
- EBS
- Exact Bayesian Segmentation
- EBS
- Exact Bayesian Segmentation
- EBSEA
- Exon Based Strategy for Expression Analysis of genes
- EBSeq
- An R package for gene and isoform differential expression analysis of RNA-seq data
- EBSeqHMM
- Bayesian analysis for identifying gene or isoform expression changes in ordered RNA-seq experiments
- ebSNP
- Genotyping and SNP calling using single-sample next generation sequencing data
- ecb
- Programmatic Access to the European Central Bank's Statistical Data Warehouse (SDW)
- ECctmc
- Simulation from Endpoint-Conditioned Continuous Time Markov Chains
- ecd
- Elliptic Distribution and Lambda Option Pricing Model
- Ecdat
- Data Sets for Econometrics
- Ecdat
- Data Sets for Econometrics
- ecdfHT
- Empirical CDF for Heavy Tailed Data
- ecespa
- Functions for Spatial Point Pattern Analysis
- Ecfun
- Functions for Ecdat
- Ecfun
- Functions for Ecdat
- ECharts2Shiny
- Embedding Interactive Charts Generated with ECharts Library into Shiny Applications
- ecipex
- Efficient calculation of fine structure isotope patterns via Fourier transforms of simplex-based elemental models
- ecm
- Build Error Correction Models
- eco
- Ecological Inference in 2x2 Tables
- ecodist
- Dissimilarity-based functions for ecological analysis
- ecoengine
- Programmatic Interface to the API Serving UC Berkeley's Natural History Data
- EcoGenetics
- Spatial Analysis of Phenotypic, Genotypic and Environmental Data
- EcoHydRology
- A community modeling foundation for Eco-Hydrology.
- ecolitk
- Meta-data and tools for E. coli
- ecolMod
- "A practical guide to ecological modelling - using R as a simulation platform"
- ecolMod
- "A Practical Guide to Ecological Modelling - Using R as a Simulation Platform"
- ecomodtools
- Ecological Modelling Toolbox
- EconDemand
- General Analysis of Various Economics Demand Systems
- ecoPD
- Ecologically-informed phylodiversity metrics
- ecoreg
- Ecological Regression using Aggregate and Individual Data
- ecoretriever
- R Interface to the EcoData Retriever
- ecosim
- Toolbox for Aquatic Ecosystem Modeling
- EcoSimR
- Null Model Analysis for Ecological Data
- ECOSolveR
- Embedded Conic Solver in R
- ecospace
- Simulating Community Assembly and Ecological Diversification Using Ecospace Frameworks
- ecospat
- Spatial Ecology Miscellaneous Methods
- ecotoxicology
- Methods for Ecotoxicology
- ecotoxicology
- Methods for Ecotoxicology
- EcoTroph
- EcoTroph R package
- ecoval
- Procedures for Ecological Assessment of Surface Waters
- EcoVirtual
- Simulation of Ecological Models
- ecp
- Non-Parametric Multiple Change-Point Analysis of Multivariate Data
- ECPaysage
- A set of R resources to teach landscape ecology, landscape analysis and spatial statistics
- ecr
- Evolutionary Computing in R
- edarf
- Exploratory Data Analysis using Random Forests
- EDASeq
- Exploratory Data Analysis and Normalization for RNA-Seq
- edcc
- Economic Design of Control Charts
- edci
- Edge Detection and Clustering in Images
- edd
- expression density diagnostics
- EDDA
- Experimental Design in Differential Abundance analysis
- edeaR
- Exploratory and Descriptive Event-Based Data Analysis
- edeR
- Email Data Extraction Using R
- edesign
- Maximum Entropy Sampling
- edf
- Read Data from European Data Format (EDF and EDF+) Files
- EDFIR
- Estimating Discrimination Factors
- edfReader
- Reading EDF(+) and BDF(+) Files
- edfun
- Creating Empirical Distribution Functions
- edgar
- Platform for EDGAR Filing Management
- edge
- Extraction of Differential Gene Expression
- edgebundleR
- Circle Plot with Bundled Edges
- edgeCorr
- Spatial Edge Correction
- edgeR
- Empirical Analysis of Digital Gene Expression Data in R
- edgeRun
- More Powerful Unconditional Testing of Negative Binomial Means for Digital Gene Expression Data
- EDISON
- Network Reconstruction and Changepoint Detection
- EditImputeCont
- Simultaneous Edit-Imputation for Continuous Microdata
- editrules
- Parsing, Applying, and Manipulating Data Cleaning Rules
- eDMA
- Dynamic Model Averaging with Grid Search
- edpcr
- Performs Extended Digital PCR Analysis
- EDR
- Estimation of the Effective Dimension Reduction ('EDR') Space
- edrGraphicalTools
- Provides tools for dimension reduction methods
- edstan
- Stan Models for Item Response Theory
- eechidna
- Exploring Election and Census Highly Informative Data Nationally for Australia
- eefAnalytics
- Analytical Package for Analysing Education Trials
- eefMLM
- Analytical Package for Analysing Education Trials
- eegAnalysis
- Tools for analysis and classification of electroencephalography (EEG) data.
- eegc
- Engineering Evaluation by Gene Categorization (eegc)
- eegkit
- Toolkit for Electroencephalography Data
- eegkitdata
- Data for package eegkit
- eel
- Extended Empirical Likelihood
- EEM
- Read and Preprocess Fluorescence Excitation-Emission Matrix (EEM) Data
- eemR
- Tools for Pre-Processing Emission-Excitation-Matrix (EEM) Fluorescence Data
- eeptools
- Convenience Functions for Education Data
- EFAutilities
- Utility Functions for Exploratory Factor Analysis
- EFDR
- Wavelet-Based Enhanced FDR for Signal Detection in Noisy Images
- effectFusion
- Bayesian Effect Fusion for Categorical Predictors
- EffectLiteR
- Average and Conditional Effects
- effects
- Effect Displays for Linear, Generalized Linear, and Other Models
- effects
- Effect Displays for Linear, Generalized Linear, and Other Models
- EffectsRelBaseline
- Test changes of a grouped response relative to baseline.
- EffectStars
- Visualization of Categorical Response Models
- EffectStars2
- Effect Stars
- EffectTreat
- Prediction of Therapeutic Success
- EfficientMaxEigenpair
- Efficient Initials for Computing the Maximal Eigenpair
- efflog
- The Causal Effects for a Causal Loglinear Model
- efflog
- The causal effects for a causal loglinear model
- effsize
- Efficient Effect Size Computation
- efreadr
- Read European Fluxes CSV Files
- EFS
- Tool for Ensemble Feature Selection
- ega
- Error Grid Analysis
- EGAD
- Extending guilt by association by degree
- egcm
- Engle-Granger Cointegration Models
- eggCounts
- Hierarchical Modelling of Faecal Egg Counts
- egonet
- Tool for ego-centric measures in Social Network Analysis
- EGRET
- Exploration and Graphics for RivEr Trends (EGRET)
- EGRETci
- Exploration and Graphics for RivEr Trends (EGRET) Confidence Intervals
- EGSEA
- Ensemble of Gene Set Enrichment Analyses
- eha
- Event History Analysis
- eHOF
- Extended HOF (Huisman-Olff-Fresco) Models
- ei
- Ecological Inference
- EIAdata
- R Wrapper for the Energy Information Administration (EIA) API
- eiCompare
- Compares EI, Goodman, RxC Estimates
- eigeninv
- Generates (dense) matrices that have a given set of eigenvalues
- eigenmodel
- Semiparametric factor and regression models for symmetric relational data
- eigenprcomp
- Computes confidence intervals for principal components
- EILA
- Efficient Inference of Local Ancestry
- eiPack
- eiPack: Ecological Inference and Higher-Dimension Data Management
- eiR
- Accelerated similarity searching of small molecules
- eisa
- Expression data analysis via the Iterative Signature Algorithm
- eive
- An algorithm for reducing errors-in-variable bias in simple linear regression
- eiwild
- Ecological Inference with individual and aggregate data
- eiwild
- Ecological Inference with individual and aggregate data
- EL
- Two-sample Empirical Likelihood
- elasso
- Enhanced Least Absolute Shrinkage and Selection Operator Regression Model
- elastic
- General Purpose Interface to 'Elasticsearch'
- elasticIsing
- Ising Network Estimation using Elastic Net and k-Fold Cross-Validation
- elasticnet
- Elastic-Net for Sparse Estimation and Sparse PCA
- elasticsearchr
- A Lightweight Interface for Interacting with Elasticsearch from R
- ELBOW
- ELBOW - Evaluating foLd change By the lOgit Way
- elec
- Collection of functions for statistical election audits
- elec.strat
- Functions for election audits using stratified random samples
- electionsBR
- R Functions to Download and Clean Brazilian Electoral Data
- electricity
- Electricity market models
- electronics
- Electronics
- elementR
- A Shiny Application for Reducing Elemental LA-ICPMS Data from Solid Structures
- ElemStatLearn
- Data Sets, Functions and Examples from the Book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman
- elexr
- Load Associated Press Election Results with Elex
- elhmc
- Sampling from a Empirical Likelihood Bayesian Posterior of Parameters Using Hamiltonian Monte Carlo
- elliplot
- Ellipse Summary Plot of Quantiles
- ellipse
- Functions for drawing ellipses and ellipse-like confidence regions
- elliptic
- Elliptic Functions
- ELMER
- Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes
- elmNN
- Implementation of ELM (Extreme Learning Machine ) algorithm for SLFN ( Single Hidden Layer Feedforward Neural Networks )
- ELMR
- Extreme Machine Learning (ELM)
- EloChoice
- Preference Rating for Visual Stimuli Based on Elo Ratings
- EloRating
- Animal Dominance Hierarchies by Elo Rating
- elrm
- Exact Logistic Regression via MCMC
- elsa
- Entropy-based Local indicator of Spatial Association
- ElstonStewart
- Elston-Stewart Algorithm
- ELT
- Experience Life Tables
- ELYP
- Empirical Likelihood Analysis for the Cox Model and Yang-Prentice (2005) Model
- EMA
- Easy Microarray Data Analysis
- EMbC
- Expectation-Maximization Binary Clustering
- embryogrowth
- Tools to Analyze the Thermal Reaction Norm of Embryo Growth
- EMC
- Evolutionary Monte Carlo (EMC) algorithm
- EMCluster
- EM Algorithm for Model-Based Clustering of Finite Mixture Gaussian Distribution
- EMD
- Empirical Mode Decomposition and Hilbert Spectral Analysis
- emdbook
- Support Functions and Data for "Ecological Models and Data"
- emdi
- Estimating and Mapping Disaggregated Indicators
- emdist
- Earth Mover's Distance
- EMDomics
- Earth Mover's Distance for Differential Analysis of Genomics Data
- emg
- Exponentially Modified Gaussian (EMG) Distribution
- emil
- Evaluation of Modeling without Information Leakage
- emIRT
- EM Algorithms for Estimating Item Response Theory Models
- emissions
- What the package does (short line)
- EmiStatR
- Estimation of Wastewater Emissions in Combined Sewer Systems
- EMLasso
- Fit (logistic) LASSO when there is missing data in the predictors
- eMLEloglin
- Fitting log-Linear Models in Sparse Contingency Tables
- emma
- Evolutionary model-based multiresponse approach
- EMMAgeo
- End-Member Modelling of Grain-Size Data
- emme2
- Read and Write to an EMME/2 databank
- EMMIXcontrasts
- Contrasts in mixed effects for EMMIX model with random effects.
- EMMIXskew
- The EM Algorithm and Skew Mixture Distribution
- EMMIXuskew
- Fitting Unrestricted Multivariate Skew t Mixture Models
- EMMLi
- A Maximum Likelihood Approach to the Analysis of Modularity
- EMMREML
- Fitting Mixed Models with Known Covariance Structures
- emoa
- Evolutionary Multiobjective Optimization Algorithms
- emojifont
- Emoji Fonts for using in R
- emon
- Tools for Environmental and Ecological Survey Design
- emon
- Tools for Environmental and Ecological Survey Design
- emov
- Eye Movement Analysis Package for Fixation and Saccade Detection
- EMP
- Expected Maximum Profit Classification Performance Measure
- EmpiricalBrownsMethod
- Uses Brown's method to combine p-values from dependent tests
- EmpiricalCalibration
- Routines for Performing Empirical Calibration of Observational Study Estimates
- empiricalFDR.DESeq2
- Simulation-Based False Discovery Rate in RNA-Seq
- emplik
- Empirical Likelihood Ratio for Censored/Truncated Data
- emplik2
- Empirical Likelihood Ratio Test for Two Samples with Censored Data
- EMSaov
- The Analysis of Variance with EMS
- EMSC
- Extended Multiplicative Signal Correction
- EMT
- Exact Multinomial Test: Goodness-of-Fit Test for Discrete Multivariate data
- emulator
- Bayesian emulation of computer programs
- emuR
- Main Package of the EMU Speech Database Management System
- EMVC
- Entropy Minimization over Variable Clusters (EMVC)
- enaR
- Tools for Ecological Network Analysis
- ENCODExplorer
- A compilation of ENCODE metadata
- endogenous
- Classical Simultaneous Equation Models
- endogMNP
- R Package for Fitting Multinomial Probit Models with Endogenous Selection
- endorse
- R Package for Analyzing Endorsement Experiments
- endtoend
- Transmissions and Receptions in an End to End Network
- energy
- E-Statistics: Multivariate Inference via the Energy of Data
- energyr
- Data Published by the United States Federal Energy Regulatory Commission
- english
- Translate integers into English
- EngrExpt
- Data sets from "Introductory Statistics for Engineering Experimentation"
- EngrExpt
- Data sets from "Introductory Statistics for Engineering Experimentation"
- engsoccerdata
- English and European Soccer Results 1871-2016
- enigma
- Client for the 'Enigma' 'API'
- ENiRG
- Ecological Niche in R and GRASS
- ENMeval
- Automated Runs and Evaluations of Ecological Niche Models
- ENmisc
- Neuwirth miscellaneous
- ENmix
- Data preprocessing and quality control for Illumina HumanMethylation450 and MethylationEPIC BeadChip
- enpls
- Ensemble Partial Least Squares Regression
- EnQuireR
- A package dedicated to questionnaires
- EnQuireR
- A package dedicated to questionnaires
- enRich
- An R Package for the Analysis of Multiple ChIP-Seq Data
- EnrichedHeatmap
- Making Enriched Heatmaps
- EnrichmentBrowser
- Seamless navigation through combined results of set-based and network-based enrichment analysis
- enrichvs
- Enrichment assessment of virtual screening approaches
- enrichwith
- Methods to Enrich R Objects with Extra Components
- ensbiascoR
- Resampling bias correction for large initial condition ensembles
- ensembldb
- Utilities to create and use an Ensembl based annotation database
- EnsembleBase
- Extensible Package for Parallel, Batch Training of Base Learners for Ensemble Modeling
- ensembleBMA
- Probabilistic Forecasting using Ensembles and Bayesian Model Averaging
- EnsembleCV
- Extensible Package for Cross-Validation-Based Integration of Base Learners
- ensembleMOS
- Ensemble Model Output Statistics
- EnsemblePCReg
- Extensible Package for Principal-Component-Regression-Based Heterogeneous Ensemble Meta-Learning
- EnsemblePenReg
- Extensible Classes and Methods for Penalized-Regression-Based Integration of Base Learners
- ensembleR
- Ensemble Models in R
- ensemblVEP
- R Interface to Ensembl Variant Effect Predictor
- ensurer
- Ensure Values at Runtime
- entropart
- Entropy Partitioning to Measure Diversity
- entropy
- Estimation of Entropy, Mutual Information and Related Quantities
- EntropyEstimation
- Estimation of Entropy and Related Quantities
- EntropyExplorer
- Tools for Exploring Differential Shannon Entropy, Differential Coefficient of Variation and Differential Expression
- EnvCpt
- Detection of Structural Changes in Climate and Environment Time Series
- enveomics.R
- Various R Functions from the Kostas Lab
- enviGCMS
- GC-MS Data Analysis for Environmental Science
- enviPat
- Isotope Pattern, Profile and Centroid Calculation for Mass Spectrometry
- enviPick
- Peak Picking for High Resolution Mass Spectrometry Data
- envirem
- Generation of ENVIREM Variables
- EnviroStat
- Statistical Analysis of Environmental Space-Time Processes
- ENVISIONQuery
- Retrieval from the ENVISION bioinformatics data portal into R
- envlpaster
- Enveloping the Aster Model
- EnvNicheR
- Niche Estimation
- EnvStats
- Package for Environmental Statistics, Including US EPA Guidance
- epade
- Easy Plots
- epandist
- Statistical Functions for the Censored and Uncensored Epanechnikov Distribution
- epanetReader
- Read Epanet Files into R
- EPGLM
- Gaussian Approximation of Bayesian Binary Regression Models
- Epi
- A Package for Statistical Analysis in Epidemiology
- Epi
- A Package for Statistical Analysis in Epidemiology
- epibasix
- Elementary Epidemiological Functions for Epidemiology and Biostatistics
- EpiBayes
- Implements Hierarchical Bayesian Models for Epidemiological Applications
- EpiContactTrace
- Epidemiological Tool for Contact Tracing
- epiDisplay
- Epidemiological Data Display Package
- EpiDynamics
- Dynamic Models in Epidemiology
- EpiEstim
- EpiEstim: a package to estimate time varying reproduction numbers from epidemic curves.
- epifit
- Flexible Modelling Functions for Epidemiological Data Analysis
- epiG
- DNA methylation and SNP calling for bisulfite sequencing data
- epigenomix
- Epigenetic and gene transcription data normalization and integration with mixture models
- EpiModel
- Mathematical Modeling of Infectious Disease
- epinet
- Epidemic/Network-Related Tools
- epinetics
- EpiNetics
- epineticseq
- EpiNeticSeq
- epiR
- Tools for the Analysis of Epidemiological Data
- EPISbigRR
- Generalized Ridge Regression for Analysis of Interaction Effects
- episensr
- Basic Sensitivity Analysis of Epidemiological Results
- episheet
- Rothman's Episheet
- episplineDensity
- Density Estimation with Soft Information by Exponential Epi-splines
- epistasis
- Detecting Epistatic Selection with Partially Observed Genotype Data
- epitools
- Epidemiology Tools
- EpitopePrediction
- Predict Binding Between Peptides and MHC Molecules
- epivizr
- R Interface to epiviz web app
- epivizrData
- Data Management API for epiviz interactive visualization app
- epivizrServer
- WebSocket server infrastructure for epivizr apps and packages
- epivizrStandalone
- Run Epiviz Interactive Genomic Data Visualization App within R
- EpiWeek
- Conversion Between Epidemiological Weeks and Calendar Dates
- Eplot
- Plotting longitudinal series
- epoc
- EPoC (Endogenous Perturbation analysis of Cancer)
- epr
- Easy polynomial regression
- EQL
- Extended-Quasi-Likelihood-Function (EQL)
- eqs2lavaan
- EQS Output Conversion to lavaan Functions
- eqtl
- Tools for analyzing eQTL experiments: A complementary to Karl Broman's 'qtl' package for genome-wide analysis
- equate
- Observed-Score Linking and Equating
- equateIRT
- Direct, Chain and Average Equating Coefficients with Standard Errors Using IRT Methods
- equivalence
- Provides Tests and Graphics for Assessing Tests of Equivalence
- erah
- Automated Spectral Deconvolution, Alignment, and Metabolite Identification in GC/MS-Based Untargeted Metabolomics
- erboost
- Nonparametric Multiple Expectile Regression via ER-Boost
- erccdashboard
- Assess Differential Gene Expression Experiments with ERCC Controls
- erer
- Empirical Research in Economics with R
- ergm
- Fit, Simulate and Diagnose Exponential-Family Models for Networks
- ergm.count
- Fit, Simulate and Diagnose Exponential-Family Models for Networks with Count Edges
- ergm.ego
- Fit, Simulate and Diagnose Exponential-Family Random Graph Models to Egocentrically Sampled Network Data
- ergm.graphlets
- ERG Modeling Based on Graphlet Properties
- ergmharris
- Local Health Department network data set
- ergm.rank
- Fit, Simulate and Diagnose Exponential-Family Models for Rank-Order Relational Data
- ergm.userterms
- User-specified terms for the statnet suite of packages
- EricksenLeslie
- numerical solution of Ericsken-Leslie equations for 1D liquid crystal cells
- eRm
- Extended Rasch Modeling
- eRm
- Extended Rasch Modeling
- erma
- epigenomic road map adventures
- ERP
- Significance Analysis of Event-Related Potentials Data
- erp.easy
- Event-Related Potential (ERP) Data Exploration Made Easy
- erpR
- Event-related potentials (ERP) analysis, graphics and utility functions
- erpR
- Event-related potentials (ERP) analysis, graphics and utility functions
- errint
- Build Error Intervals
- errorizer
- Function Errorizer
- ES
- Edge Selection
- esaBcv
- Estimate Number of Latent Factors and Factor Matrix for Factor Analysis
- esaddle
- Extended Empirical Saddlepoint Density Approximation
- esc
- Effect Size Computation for Meta Analysis
- ESEA
- ESEA: Discovering the Dysregulated Pathways based on Edge Set Enrichment Analysis
- esetVis
- Visualizations of expressionSet Bioconductor object
- ESG
- ESG - A package for asset projection
- ESGtoolkit
- Toolkit for the simulation of financial assets and interest rates models.
- ESKNN
- Ensemble of Subset of K-Nearest Neighbours Classifiers for Classification and Class Membership Probability Estimation
- ESM
- Ecological Specificity Measures
- estatapi
- R Interface to e-Stat API
- EstCRM
- Calibrating Parameters for the Samejima's Continuous IRT Model
- EstHer
- Estimation of Heritability in High Dimensional Sparse Linear Mixed Models using Variable Selection
- estimability
- Tools for Assessing Estimability of Linear Predictions
- estimate
- Estimate of Stromal and Immune Cells in Malignant Tumor Tissues from Expression Data
- estout
- Estimates Output
- EstSimPDMP
- Estimation and Simulation for PDMPs
- etable
- Easy Table
- etanalysis
- Analysis of Eye-tracker data
- ETAS
- Modeling Earthquake Data Using ETAS Model
- etasFLP
- Mixed FLP and ML Estimation of ETAS Space-Time Point Processes
- ETC
- Equivalence to control
- etl
- Extract-Transform-Load Framework for Medium Data
- ETLUtils
- Utility Functions to Execute Standard Extract/Transform/Load Operations (using Package 'ff') on Large Data
- etm
- Empirical Transition Matrix
- etma
- Epistasis Test in Meta-Analysis
- etrunct
- Computes Moments of Univariate Truncated t Distribution
- etseed
- Client for 'etcd', a 'Key-value' Database
- eudysbiome
- Cartesian plot and contingency test on 16S Microbial data
- eulerian
- eulerian: A package to find eulerian paths from graphs
- eulerr
- Area-Proportional Euler Diagrams
- euroformix
- Package for intepretation of quantitative DNA mixtures
- euroMix
- Calculations for DNA mixtures
- euroMix
- Calculations for DNA Mixtures
- euroMixR
- Calculations for DNA mixtures, only R code
- europepmc
- R Interface to the Europe PubMed Central RESTful Web Service
- EurosarcBayes
- Bayesian Single Arm Sample Size Calculation Software
- eurostat
- Tools for Eurostat Open Data
- eva
- Extreme Value Analysis with Goodness-of-Fit Testing
- EvalEst
- Dynamic Systems Estimation - Extensions
- evaluate
- Parsing and Evaluation Tools that Provide More Details than the Default
- EvaluationMeasures
- Collection of Model Evaluation Measure Functions
- Evapotranspiration
- Modelling Actual, Potential and Reference Crop Evapotranspiration
- evclass
- Evidential Distance-Based Classification
- evclust
- Evidential Clustering
- EvCombR
- Evidence Combination in R
- evd
- Functions for Extreme Value Distributions
- evdbayes
- Bayesian Analysis in Extreme Value Theory
- eVenn
- A Powerful Tool to Quickly Compare Huge Lists and Draw Venn Diagrams
- event
- Event History Procedures and Models
- eventInterval
- Sequential Event Interval Analysis
- events
- Store and manipulate event data
- events
- Store and manipulate event data
- eventstudies
- Event study and extreme event analysis
- EventTree
- Event Trees for Hazard and Risk Analysis
- evidenceFactors
- Reporting Tools for Sensitivity Analysis of Evidence Factors in Observational Studies
- evir
- Extreme Values in R
- evir
- Extreme Values in R
- evmix
- Extreme Value Mixture Modelling, Threshold Estimation and Boundary Corrected Kernel Density Estimation
- evobiR
- Comparative and Population Genetic Analyses
- evolqg
- Tools for Evolutionary Quantitative Genetics
- evolvability
- Calculation of Evolvability Parameters
- Evomorph
- Evolutionary Morphometric Simulation
- evoper
- Evolutionary Parameter Estimation for 'Repast Simphony' Models
- EvoRAG
- Evolutionary Rates Across Gradients
- evt0
- Mean of order p, peaks over random threshold Hill and high quantile estimates
- evtree
- Evolutionary Learning of Globally Optimal Trees
- evtree
- Evolutionary Learning of Globally Optimal Trees
- EW
- Edgeworth Expansion
- ewc
- Edge-Weighted Closeness
- EWCE
- Expression Weighted Celltype Enrichment
- EWGoF
- Goodness-of-Fit Tests for the Exponential and Two-Parameter Weibull Distributions
- Exact
- Unconditional Exact Test
- exact2x2
- Exact Conditional Tests and Confidence Intervals for 2x2 tables
- exactci
- Exact P-Values and Matching Confidence Intervals for Simple Discrete Parametric Cases
- ExactCIdiff
- Inductive Confidence Intervals for the difference between two proportions
- exactLoglinTest
- Monte Carlo Exact Tests for Log-linear models
- exactmeta
- Exact fixed effect meta analysis
- ExactPath
- Exact solution paths for regularized LASSO regressions with L_1 penalty
- exactRankTests
- Exact Distributions for Rank and Permutation Tests
- ExactSampling
- ExactSampling: risk evaluation using exact resampling methods for the k Nearest Neighbor algorithm.
- exams
- Automatic Generation of Exams in R
- exams
- Automatic Generation of Exams in R
- ExceedanceTools
- Confidence regions for exceedance sets and contour lines
- excel.link
- Convenient Data Exchange with Microsoft Excel
- exCon
- Interactive Exploration of Contour Data
- excursions
- Excursion Sets and Contour Credibility Regions for Random Fields
- exec
- Execute scripts in exec directory of packages
- exif
- Read EXIF Metadata from JPEGs
- exifr
- EXIF Image Data in R
- ExiMiR
- R functions for the normalization of Exiqon miRNA array data
- ExLiebeRes
- Exact Liebermann/Reshnikov and Bruhn-Suhr/Krumbholz plans
- exomeCopy
- Copy number variant detection from exome sequencing read depth
- ExomeDepth
- Calls Copy Number Variants from Targeted Sequence Data
- exomePeak
- exome-based anlaysis of MeRIP-Seq data: peak calling and differential analysis
- exp2flux
- Convert Gene EXPression Data to FBA FLUXes
- expandFunctions
- Feature Matrix Builder
- expands
- Expanding Ploidy and Allele-Frequency on Nested Subpopulations
- ExpDE
- Modular Differential Evolution for Experimenting with Operators
- ExpDes
- Experimental Designs package
- ExpDes.pt
- Pacote Experimental Designs (Portuguese)
- ExpectedReturns
- Computation of implied expected returns
- expectile
- Modelling of expectiles
- expectreg
- Expectile and Quantile Regression
- experiment
- experiment: R package for designing and analyzing randomized experiments
- ExperimentHub
- Client to access ExperimentHub resources
- ExperimentHubData
- Add resources to ExperimentHub
- expert
- Modeling without data using expert opinion
- ExplainPrediction
- Explanation of Predictions for Classification and Regression Models
- explor
- Interactive Interfaces for Results Exploration
- explorase
- GUI for exploratory data analysis of systems biology data
- exploreR
- Tools for Quickly Exploring Data
- expm
- Matrix Exponential
- expoRkit
- Expokit in R
- ExPosition
- Exploratory analysis with the singular value decomposition.
- expoTree
- Calculate density dependent likelihood of a phylogenetic tree
- expp
- Spatial analysis of extra-pair paternity
- ExpressionAtlas
- Download datasets from EMBL-EBI Expression Atlas
- ExpressionView
- Visualize biclusters identified in gene expression data
- exprso
- Rapid Implementation of Machine Learning Algorithms for Genomic Data
- expsmooth
- Data Sets from "Forecasting with Exponential Smoothing"
- expss
- Some Useful Functions from Spreadsheets and 'SPSS' Statistics
- exptest
- Tests for Exponentiality
- exreport
- Fast, Reliable and Elegant Reproducible Research
- EXRQ
- Extreme Regression of Quantiles
- exsic
- Convenience Functions for Botanists to Create Specimens Indices
- ExtDist
- Extending the Range of Functions for Probability Distributions
- extendedForest
- Breiman and Cutler's random forests for classification and regression
- exteriorMatch
- Constructs the Exterior Match from Two Matched Control Groups
- extfunnel
- Additional Funnel Plot Augmentations
- extlasso
- Maximum penalized likelihood estimation with extended lasso penalty
- extraBinomial
- Extra-binomial approach for pooled sequencing data
- extracat
- Categorical Data Analysis and Visualization
- extraDistr
- Additional Univariate and Multivariate Distributions
- extrafont
- Tools for using fonts
- extrafontdb
- Package for holding the database for the extrafont package
- extraTrees
- Extremely Randomized Trees (ExtraTrees) Method for Classification and Regression
- ExtremalDep
- Extremal Dependence Models
- ExtremeBounds
- Extreme Bounds Analysis (EBA)
- extremefit
- Estimation of Extreme Conditional Quantiles and Probabilities
- extRemes
- Extreme Value Analysis
- extremeStat
- Extreme Value Statistics and Quantile Estimation
- extremevalues
- Univariate Outlier Detection
- extremogram
- Estimation of Extreme Value Dependence for Time Series Data
- extWeibQuant
- Estimate Lower Extreme Quantile with the Censored Weibull MLE and Censored Weibull Mixture
- eyelinker
- Load Raw Data from Eyelink Eye Trackers
- eyetracking
- Eyetracking Helper Functions
- eyetrackingR
- Eye-Tracking Data Analysis
- ez
- Easy Analysis and Visualization of Factorial Experiments
- EZ2
- Modeling Human Response Times and Accuracy using the EZ/EZ2 Diffusion Model
- ezec
- Easy Interface to Effective Concentration Calculations
- ezglm
- selects significant non-additive interaction between two variables using fast GLM implementation.
- ezknitr
- Avoid the Typical Working Directory Pain When Using 'knitr'
- ezsim
- provide an easy to use framework to conduct simulation
- ezsummary
- Generate Data Summary in a Tidy Format
- fabia
- FABIA: Factor Analysis for Bicluster Acquisition
- fACD
- Autoregressive Conditional Duration Models in R
- face
- Fast Covariance Estimation for Sparse Functional Data
- facopy
- Feature-based association and gene-set enrichment for copy number alteration analysis in cancer
- FacPad
- Bayesian Sparse Factor Analysis model for the inference of pathways responsive to drug treatment
- factDesign
- Factorial designed microarray experiment analysis
- FactMixtAnalysis
- Factor Mixture Analysis with covariates
- FACTMLE
- Maximum Likelihood Factor Analysis
- FactoClass
- Combination of Factorial Methods and Cluster Analysis
- factoextra
- Extract and Visualize the Results of Multivariate Data Analyses
- FactoMineR
- Multivariate Exploratory Data Analysis and Data Mining
- factorAnalytics
- Factor Analytics
- FactorAnalytics
- Functions for performing factor analysis on financial time series
- FactoRizationMachines
- Machine Learning with Higher-Order Factorization Machines
- factorplot
- Graphical Presentation of Simple Contrasts
- factorplot
- factorplot
- factorQR
- Bayesian quantile regression factor models
- factorstochvol
- Bayesian Estimation of (Sparse) Latent Factor Stochastic Volatility Models
- Factoshiny
- Perform Factorial Analysis from 'FactoMineR' with a Shiny Application
- FACTscorer
- Scores the FACT and FACIT Family of Patient-Reported Outcome Measures
- factualR
- thin wrapper for the Factual.com server API
- FADA
- Variable Selection for Supervised Classification in High Dimension
- FAdist
- Distributions that are Sometimes Used in Hydrology
- Fahrmeir
- Data from the Book "Multivariate Statistical Modelling Based on Generalized Linear Models", First Edition, by Ludwig Fahrmeir and Gerhard Tutz
- fail
- File Abstraction Interface Layer (FAIL)
- FAiR
- Factor Analysis in R
- faisalconjoint
- Faisal Conjoint Model: A New Approach to Conjoint Analysis
- fakeplace
- Generate fake geographies
- fakeR
- Simulates Data from a Data Frame of Different Variable Types
- falcon
- Finding Allele-Specific Copy Number in Next-Generation Sequencing Data
- falconx
- Finding Allele-Specific Copy Number in Whole-Exome Sequencing Data
- FamAgg
- Pedigree Analysis and Familial Aggregation
- fame
- Interface for FAME Time Series Database
- FamEvent
- Family Age-at-Onset Data Simulation and Penetrance Estimation
- Familias
- Probabilities for Pedigrees Given DNA Data
- FAMILY
- A Convex Formulation for Modeling Interactions with Strong Heredity
- FAmle
- Maximum Likelihood and Bayesian Estimation of Univariate Probability Distributions
- FAMT
- Factor Analysis for Multiple Testing (FAMT) : simultaneous tests under dependence in high-dimensional data
- fanc
- Penalized Likelihood Factor Analysis via Nonconvex Penalty
- fANCOVA
- Nonparametric Analysis of Covariance
- fancycut
- A Fancy Version of 'base::cut'
- fanovaGraph
- Building Kriging Models from FANOVA Graphs
- fanplot
- Visualisation of Sequential Probability Distributions Using Fan Charts
- FAOSTAT
- Download Data from the FAOSTAT Database of the Food and Agricultural Organization (FAO) of the United Nations
- faoutlier
- Influential Case Detection Methods for Factor Analysis and Structural Equation Models
- far
- Modelization for Functional AutoRegressive Processes
- faraway
- Functions and Datasets for Books by Julian Faraway
- farff
- A Faster 'ARFF' File Reader and Writer
- fArma
- Rmetrics - Modelling ARMA Time Series Processes
- fArma
- ARMA Time Series Modelling
- farms
- FARMS - Factor Analysis for Robust Microarray Summarization
- farsi
- Translate integers into persian
- fAsianOptions
- Rmetrics - EBM and Asian Option Valuation
- fAsianOptions
- EBM and Asian Option Valuation
- fAssets
- Rmetrics - Analysing and Modelling Financial Assets
- fAssets
- Rmetrics - Analysing and Modelling Financial Assets
- fassoc
- VARIANCE COMPONENT BASED MULTI-MARKER ASSOCIATION TEST USING FAMILY AND UNRELATED DATA
- fast
- Implementation of the Fourier Amplitude Sensitivity Test (FAST)
- fastAdaboost
- a Fast Implementation of Adaboost
- FastBandChol
- Fast Estimation of a Covariance Matrix by Banding the Cholesky Factor
- fastclime
- A Fast Solver for Parameterized LP Problems, Constrained L1 Minimization Approach to Sparse Precision Matrix Estimation and Dantzig Selector
- fastcluster
- Fast Hierarchical Clustering Routines for R and Python
- fastcmh
- Significant Interval Discovery with Categorical Covariates
- fastcox
- Lasso and elastic-net penalized Cox's regression in high dimensions models using the cocktail algorithm
- fastdigest
- Fast, Low Memory-Footprint Digests of R Objects
- fasteraster
- Raster Image Processing and Vector Recognition
- fastGHQuad
- Fast Rcpp implementation of Gauss-Hermite quadrature
- FastGP
- Efficiently Using Gaussian Processes with Rcpp and RcppEigen
- fastGraph
- Fast Drawing and Shading of Graphs of Statistical Distributions
- FastHCS
- Robust Algorithm for Principal Component Analysis
- fastHICA
- Hierarchical Independent Component Analysis: a Multi-Scale Sparse Non-Orthogonal Data-Driven Basis
- fastHorseshoe
- The Elliptical Slice Sampler for Bayesian Horseshoe Regression
- fastICA
- FastICA Algorithms to perform ICA and Projection Pursuit
- FastImputation
- Learn from Training Data then Quickly Fill in Missing Data
- FastKM
- A Fast Multiple-Kernel Method Based on a Low-Rank Approximation
- FastKNN
- Fast k-Nearest Neighbors
- fastLiquidAssociation
- functions for genome-wide application of Liquid Association
- fastLSU
- Fast Linear Step Up Procedure of Benjaminiâ€“Hochberg FDR Method for Huge-Scale Testing Problems
- fastM
- Fast Computation of Multivariate M-estimators
- fastmatch
- Fast match() function
- FastPCS
- FastPCS Robust Fit of Multivariate Location and Scatter
- fastpseudo
- Fast Pseudo Observations
- fastR
- Foundations and Applications of Statistics Using R
- fastR
- Data sets and utilities for Foundations and Applications of Statistics by R Pruim
- FastRCS
- Fits the FastRCS Robust Multivariable Linear Regression Model
- FastRWeb
- Fast Interactive Framework for Web Scripting Using R
- fastseg
- fastseg - a fast segmentation algorithm
- fastSOM
- Fast Calculation of Spillover Measures
- fasttime
- Fast Utility Function for Time Parsing and Conversion
- fat2Lpoly
- Two-Locus Family-Based Association Test with Polytomic Outcome
- FatTailsR
- Kiener Distributions and Fat Tails in Finance
- FaultTree
- Fault Trees for Risk and Reliability Analysis
- fauxpas
- HTTP Error Helpers
- favnums
- A Dataset of Favourite Numbers
- FAwR
- Functions and Datasets for "Forest Analytics with R"
- fBasics
- Rmetrics - Markets and Basic Statistics
- fBasics
- Rmetrics - Markets and Basic Statistics
- fbati
- Gene by Environment Interaction and Conditional Gene Tests for Nuclear Families
- FBFsearch
- Algorithm for Searching the Space of Gaussian Directed Acyclic Graph Models Through Moment Fractional Bayes Factors
- FBN
- FISH Based Normalization and Copy Number inference of SNP microarray data
- fBonds
- Rmetrics - Pricing and Evaluating Bonds
- fBonds
- Bonds and Interest Rate Models
- fbRads
- Analyzing and Managing Facebook Ads from R
- fbRanks
- Association Football (Soccer) Ranking via Poisson Regression
- fbroc
- Fast Algorithms to Bootstrap Receiver Operating Characteristics Curves
- fCCAC
- functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasets
- fcd
- Fused Community Detection
- fCertificates
- fCertificates - Basics of Certificates and Structured Products Valuation
- fCertificates
- Basics of Certificates and Structured Products Valuation
- FCGR
- Fatigue Crack Growth in Reliability
- fCI
- f-divergence Cutoff Index for Differential Expression Analysis in Transcriptomics and Proteomics
- fclust
- Fuzzy Clustering
- FCMapper
- Fuzzy Cognitive Mapping
- FCNN4R
- Fast Compressed Neural Networks for R
- fCopulae
- Rmetrics - Bivariate Dependence Structures with Copulae
- fCopulae
- Rmetrics - Bivariate Dependence Structures with Copulae
- fcros
- A Method to Search for Differentially Expressed Genes and to Detect Recurrent Chromosomal Copy Number Aberrations
- FD
- Measuring functional diversity (FD) from multiple traits, and other tools for functional ecology
- FD
- Measuring functional diversity (FD) from multiple traits, and other tools for functional ecology
- fda
- Functional Data Analysis
- fda
- Functional Data Analysis
- fdakma
- Functional Data Analysis: K-Mean Alignment
- fdaMixed
- Functional data analysis in a mixed model framework
- fdapace
- Functional Data Analysis and Empirical Dynamics
- fdaPDE
- Functional Data Analysis and Partial Differential Equations; Statistical Analysis of Functional and Spatial Data, Based on Regression with Partial Differential Regularizations
- fdasrvf
- Elastic Functional Data Analysis
- fdatest
- Interval Testing Procedure for Functional Data
- fda.usc
- Functional Data Analysis and Utilities for Statistical Computing
- FDboost
- Boosting Functional Regression Models
- FDboost
- Boosting Functional Regression Models
- fdcov
- Analysis of Covariance Operators
- FDGcopulas
- Multivariate Dependence with FDG Copulas
- fdnonpar
- Methods for Multivariate or Functional Data
- fdq
- Forest Data Quality
- fdrame
- FDR adjustments of Microarray Experiments (FDR-AME)
- fdrci
- Permutation-Based FDR Point and Confidence Interval Estimation
- fdrDiscreteNull
- False Discovery Rate Procedure Under Discrete Null Distributions
- FDRreg
- False discovery rate regression
- FDRsampsize
- Compute Sample Size that Meets Requirements for Average Power and FDR
- fdrtool
- Estimation of (Local) False Discovery Rates and Higher Criticism
- fds
- Functional data sets
- fdth
- Frequency Distribution Tables, Histograms and Polygons
- FeaLect
- Scores Features for Feature Selection
- feather
- R Bindings to the Feather 'API'
- feature
- Local Inferential Feature Significance for Multivariate Kernel Density Estimation
- FeatureHashing
- Creates a Model Matrix via Feature Hashing with a Formula Interface
- features
- Feature Extraction for Discretely-Sampled Functional Data
- fechner
- Fechnerian Scaling of Discrete Object Sets
- fEcofin
- Economic and Financial Data Sets
- fecR
- Fishing Effort Calculator in R
- FedData
- Functions to Automate Downloading Geospatial Data Available from Several Federated Data Sources
- federalregister
- Client Package for the U.S. Federal Register API
- FeedbackTS
- Analysis of Feedback in Time Series
- feedeR
- Read RSS/Atom Feeds from R
- FEM
- Identification of Functional Epigenetic Modules
- FENmlm
- Fixed Effects Nonlinear Maximum Likelihood Models
- fermicatsR
- Fermi Large Area Telescope Catalogs
- fExoticOptions
- Exotic Option Valuation
- fExoticOptions
- Rmetrics - Pricing and Evaluating Exotic Option
- fExpressCertificates
- fExpressCertificates - Structured Products Valuation for ExpressCertificates/Autocallables
- fExpressCertificates
- fExpressCertificates - Structured Products Valuation for ExpressCertificates/Autocallables
- fExtremes
- Rmetrics - Modelling Extreme Events in Finance
- fExtremes
- Rmetrics - Extreme Financial Market Data
- ff
- memory-efficient storage of large data on disk and fast access functions
- ffbase
- Basic Statistical Functions for Package 'ff'
- FFD
- Freedom from Disease
- FFD
- Freedom from Disease
- FField
- Force field simulation for a set of points
- ffmanova
- Fifty-fifty MANOVA
- ffpe
- Quality assessment and control for FFPE microarray expression data
- ffstream
- Forgetting Factor Methods for Change Detection in Streaming Data
- fftrees
- Fast- and Frugal Tree Analysis
- FFTrees
- Generate, Visualise, and Compare Fast and Frugal Decision Trees
- fftw
- Fast FFT and DCT based on FFTW
- fftwtools
- Wrapper for FFTW3: Includes 1-D, Univariate and Multivariate, and 2-D Transform
- fgac
- Generalized Archimedean Copula
- FGalgorithm
- Flury and Gautschi algorithms
- fGarch
- Rmetrics - Autoregressive Conditional Heteroskedastic Modelling
- fGarch
- Rmetrics - Modelling Autoregressive Conditional Heteroskedasticity
- FGM
- Floating Grid Method
- Fgmutils
- Forest Growth Model Utilities
- FGN
- Fractional Gaussian Noise and power law decay time series model fitting
- FGNet
- Functional Gene Networks derived from biological enrichment analyses
- fgof
- Fast Goodness-of-fit Test
- fgpt
- Floating Grid Permutation Technique
- fgpt
- Floating Grid Permutation Technique
- fgsea
- Fast Gene Set Enrichment Analysis
- FGSG
- Feature Grouping and Selection Over an Undirected Graph
- fgui
- Function GUI
- fheatmap
- Fantastic Heatmap
- FHtest
- Tests for Right and Interval-Censored Survival Data Based on the Fleming-Harrington Class
- FI
- Provide functions for forest inventory calculations
- FIACH
- Retrospective Noise Control for fMRI
- fICA
- Classical, Reloaded and Adaptive FastICA Algorithms
- fields
- Tools for Spatial Data
- FieldSim
- Random Fields (and Bridges) Simulations
- fiery
- A Lightweight and Flexible Web Framework
- fifer
- A collection of miscellaneous functions.
- fiftystater
- Map Data to Visualize the Fifty U.S. States with Alaska and Hawaii Insets
- filehash
- Simple Key-Value Database
- filehashSQLite
- Simple key-value database using SQLite
- filematrix
- File-Backed Matrix Class with Convenient Read and Write Access
- filenamer
- Easy Management of File Names
- files
- Effective File Navigation from the R Console
- fImport
- Rmetrics - Importing Economic and Financial Data
- fImport
- Rmetrics - Economic and Financial Data Import
- FinAna
- Financial Analysis and Regression Diagnostic Analysis
- financial
- Solving financial problems in R
- FinancialInstrument
- Financial Instrument Model Infrastructure for R
- FinancialInstrument
- Financial Instrument Model Infrastructure for R
- FinAsym
- Classifies implicit trading activity from market quotes and computes the probability of informed trading
- FinCal
- Time Value of Money, Time Series Analysis and Computational Finance
- fincov
- Methods for estimating covariance matrices
- FinCovRegularization
- Covariance Matrix Estimation and Regularization for Finance
- FindAllRoots
- Find all root(s) of the equation and Find root(s) of the equation by dichotomy
- FindIt
- Finding Heterogeneous Treatment Effects
- FindMinIC
- Find Models with Minimum IC
- FindMyFriends
- Microbial Comparative Genomics in R
- findpython
- Python tools to find an acceptable python binary
- findviews
- A View Generator for Multidimensional Data
- FinePop
- Fine-Scale Population Analysis
- fingerprint
- Functions for Processing Binary Fingerprint Data
- fingerprint
- Functions to operate on binary fingerprint data
- finiteruinprob
- Computation of the probability of ruin within a finite time horizon
- finreportr
- Financial Data from U.S. Securities and Exchange Commission
- FinTS
- Companion to Tsay (2005) Analysis of Financial Time Series
- FinTS
- Companion to Tsay (2005) Analysis of Financial Time Series
- FIRMAGene
- FIRMAGene - differential splicing for Affymetrix Gene 1.0 ST
- FISHalyseR
- FISHalyseR a package for automated FISH quantification
- FisherEM
- The Fisher-EM algorithm
- fisheyeR
- Fisheye and Hyperbolic-space-alike Interactive Visualization Tools in R
- fisheyeR
- Fisheye and Hyperbolic-space-alike Interactive Visualization Tools in R
- FisHiCal
- Iterative FISH-based Calibration of Hi-C Data
- fishkirkko2015
- Dataset of Measurements of Fish Species at Kirkkojarvi Lake, Finland
- fishkirkko2015
- Dataset of Measurements of Fish Species at Kirkkojarvi Lake, Finland
- fishmethods
- Fishery Science Methods and Models in R
- fishMod
- Fits Poisson-Sum-of-Gammas GLMs, Tweedie GLMs, and Delta Log-Normal Models
- fishmove
- Prediction of Fish Movement Parameters
- FIT
- Transcriptomic Dynamics Models in Field Conditions
- fit4NM
- NONMEM platform
- FitAR
- Subset AR Model Fitting
- FitARMA
- FitARMA: Fit ARMA or ARIMA using fast MLE algorithm
- fitbitScraper
- Scrapes Data from Fitbit
- fitcoach
- Personalized Coach for Fitbit and R API
- fitdc
- Garmin FIT File Decoder
- fitdistrplus
- Help to Fit of a Parametric Distribution to Non-Censored or Censored Data
- fitdistrplus
- Help to Fit of a Parametric Distribution to Non-Censored or Censored Data
- fitDRC
- Fitting Density Ratio Classes
- FitHiC
- Confidence estimation for intra-chromosomal contact maps
- fitmixst4
- Fitting mixture of skew t distribution
- fit.models
- fit.models
- fit.models
- fit.models
- fitob
- General solvers for the general Black-Scholes (Fokker Planck) partial differential equation (PDE) in a multi-dimensional setting with main application in finance (option pricing).
- fitplc
- Fit Hydraulic Vulnerability Curves
- FITSio
- FITS (Flexible Image Transport System) Utilities
- fitTetra
- fitTetra is an R package for assigning tetraploid genotype scores
- fixedTimeEvents
- The Distribution of Distances Between Discrete Events in Fixed Time
- FixSeqMTP
- Fixed Sequence Multiple Testing Procedures
- fizzbuzzR
- Fizz Buzz Implementation
- FKF
- Fast Kalman Filter
- FKF
- Fast Kalman Filter
- flacco
- Feature-Based Landscape Analysis of Continuous and Constraint Optimization Problems
- flagme
- Analysis of Metabolomics GC/MS Data
- flam
- Fits Piecewise Constant Models with Data-Adaptive Knots
- flan
- FLuctuation ANalysis on Mutation Models
- flare
- Family of Lasso Regression
- flars
- Functional LARS
- flashClust
- Implementation of optimal hierarchical clustering
- FLAssess
- Generic classes and methods for stock assessment models
- FLBEIA
- Bio-Economic Impact Assessment of Management strategies using FLR
- FLCore
- Core package of FLR, fisheries modelling in R.
- FLEDA
- Exploratory Data Analysis for FLR
- FLExamples
- Example datasets for FLR manuals and tutorials
- FlexBayes
- Flexible Bayesian Inference
- flexclust
- Flexible Cluster Algorithms
- flexCWM
- Flexible Cluster-Weighted Modeling
- flexdashboard
- R Markdown Format for Flexible Dashboards
- flexmix
- Flexible Mixture Modeling
- FlexParamCurve
- Tools to Fit Flexible Parametric Curves
- flexPM
- Flexible Parametric Models for Censored and Truncated Data
- flexrsurv
- Flexible Relative Survival
- flexsurv
- Flexible Parametric Survival and Multi-State Models
- flexsurv
- Flexible parametric survival models
- flightcallr
- Classify Night Flight Calls Based on Acoustic Measurements
- FLIM
- Farewellâ€™s Linear Increments Model
- flip
- Multivariate Permutation Tests
- flipflop
- Fast lasso-based isoform prediction as a flow problem
- FLLat
- Fused Lasso Latent Feature Model
- flock
- Process Synchronization Using File Locks
- flock
- Process Synchronization Using File Locks
- flora
- Tools for Interacting with the Brazilian Flora 2020
- flowAI
- Automatic and interactive quality control for flow cytometry data
- flowBeads
- flowBeads: Analysis of flow bead data
- flowBin
- Combining multitube flow cytometry data by binning
- flowcatchR
- Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells
- flowCHIC
- Analyze flow cytometric data using histogram information
- flowCL
- Semantic labelling of flow cytometric cell populations
- flowClean
- flowClean
- flowClust
- Clustering for Flow Cytometry
- flowCore
- flowCore: Basic structures for flow cytometry data
- flowCyBar
- Analyze flow cytometric data using gate information
- flowDensity
- Sequential Flow Cytometry Data Gating
- flowDiv
- Cytometric Diversity Indices from 'FlowJo' Workspaces
- flower
- Tools for characterizing flowering traits
- flowfield
- Forecasts future values of a univariate time series.
- flowFit
- Estimate proliferation in cell-tracking dye studies
- flowFlowJo
- Tools for extracting information from a FlowJo workspace and working with the data in the flowCore paradigm.
- flowFP
- Fingerprinting for Flow Cytometry
- flowMap
- Mapping cell populations in flow cytometry data for cross-sample comparisons using the Friedman-Rafsky Test
- flowMatch
- Matching and meta-clustering in flow cytometry
- flowMeans
- Non-parametric Flow Cytometry Data Gating
- flowMerge
- Cluster Merging for Flow Cytometry Data
- flowPeaks
- An R package for flow data clustering
- flowPhyto
- Methods for Continuous Flow Cytometry
- flowPloidy
- Analyze flow cytometer data to determine sample ploidy
- flowPlots
- flowPlots: analysis plots and data class for gated flow cytometry data
- flowQ
- Quality control for flow cytometry
- flowQB
- Automated Quadratic Characterization of Flow Cytometer Instrument Sensitivity: Q, B and CV instrinsic calculations
- flowr
- Streamlining Design and Deployment of Complex Workflows
- FlowRepositoryR
- FlowRepository R Interface
- flows
- Flow Selection and Analysis
- FlowScreen
- Daily Streamflow Trend and Change Point Screening
- FlowSOM
- Using self-organizing maps for visualization and interpretation of cytometry data
- flowStats
- Statistical methods for the analysis of flow cytometry data
- flowTrans
- Parameter Optimization for Flow Cytometry Data Transformation
- flowType
- Phenotyping Flow Cytometry Assays
- flowUtils
- Utilities for flow cytometry
- flowViz
- Visualization for flow cytometry
- flowVS
- Variance stabilization in flow cytometry (and microarrays)
- flowWorkspace
- Infrastructure for representing and interacting with the gated cytometry
- FLR
- Fuzzy Logic Rule Classifier
- flsa
- Path algorithm for the general Fused Lasso Signal Approximator
- FLSSS
- Multithreaded Fixed Size Subset Sum with Bounded Error in Multidimensional Real Domain
- Flury
- Data Sets from Flury, 1997
- flux
- Flux rate calculation from dynamic closed chamber measurements
- FLXSA
- eXtended Survivor Analysis for FLR
- fma
- Data Sets from "Forecasting: Methods and Applications" by Makridakis, Wheelwright & Hyndman (1998)
- fMarkovSwitching
- R Package for Estimation, Simulation and Forecasting of a Univariate Markov Switching Model
- fmcsR
- Mismatch Tolerant Maximum Common Substructure Searching
- FME
- A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability and Monte Carlo Analysis
- FME
- A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability and Monte Carlo Analysis
- FMP
- Filtered Monotonic Polynomial IRT Models
- fmri
- Analysis of fMRI Experiments
- fmrs
- Variable Selection in Finite Mixture of AFT Regression and FMR
- fmsb
- Functions for Medical Statistics Book with some Demographic Data
- FMsmsnReg
- Regression Models with Finite Mixtures of Skew Heavy-Tailed Errors
- FMStable
- Finite Moment Stable Distributions
- fmt
- Variance estimation of FMT method (Fully Moderated t-statistic)
- fMultivar
- Rmetrics - Analysing and Modeling Multivariate Financial Return Distributions
- fMultivar
- Rmetrics - Analysing and Modeling Multivariate Financial Return Distributions
- FNN
- Fast Nearest Neighbor Search Algorithms and Applications
- fNonlinear
- Nonlinear and Chaotic Time Series Modelling
- fNonlinear
- Rmetrics - Nonlinear and Chaotic Time Series Modelling
- foba
- greedy variable selection
- focalCall
- Detection of focal aberrations in DNA copy number data
- fontBitstreamVera
- Fonts with Bitstream Vera Fonts Licence
- fontcm
- Computer Modern font for use with extrafont package
- fontLiberation
- Liberation Fonts
- fontquiver
- Set of Installed Fonts
- foodweb
- Generating food webs
- foodweb
- visualisation and analysis of food web networks
- fOptions
- Rmetrics - Pricing and Evaluating Basic Options
- fOptions
- Rmetrics - Pricing and Evaluating Basic Options
- ForAI
- Forecasting with Artificial Intelligence
- forams
- Foraminifera and Community Ecology Analyses
- forcats
- Tools for Working with Categorical Variables (Factors)
- foreach
- Provides Foreach Looping Construct for R
- foreach
- Provides Foreach Looping Construct for R
- ForeCA
- Forecastable Component Analysis
- forecast
- Forecasting Functions for Time Series and Linear Models
- ForecastCombinations
- Forecast Combinations
- forecastHybrid
- Convenient Functions for Ensemble Time Series Forecasts
- forecastSNSTS
- Forecasting for Stationary and Non-Stationary Time Series
- forecTheta
- Forecasting Time Series by Theta Models
- forega
- Floating-Point Genetic Algorithms with Statistical Forecast Based Inheritance Operator
- foreign
- Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, Weka, dBase, ...
- forensic
- Statistical Methods in Forensic Genetics
- ForensicDocument
- Quantification and evaluation tools for forensic document examiners
- forensim
- Statistical tools for the interpretation of forensic DNA mixtures
- forensim
- Statistical tools for the interpretation of forensic DNA mixtures
- forestFloor
- Visualizes Random Forests with Feature Contributions
- forestFloor
- Visualizes Random Forests with Feature Contributions
- forestFloorStable
- (Legacy version 1.5)Visualizes Random Forests with Feature Contributions
- forestinventory
- Design-Based Global and Small-Area Estimations for Multiphase Forest Inventories
- forestmodel
- Forest Plots from Regression Models
- forestplot
- Advanced Forest Plot Using 'grid' Graphics
- ForImp
- Imputation of Missing Values Through a Forward Imputation Algorithm
- ForIT
- Functions from the 2nd Italian Forest Inventory (INFC)
- FormalSeries
- Elementary arithemtic in formal series rings
- formatR
- Format R Code Automatically
- formattable
- Create 'Formattable' Data Structures
- Formula
- Extended Model Formulas
- Formula
- Extended Model Formulas
- formula.tools
- Utilities for Formulas, Expressions, Calls and Other Objects
- formulr
- Miscelaneous tools to handle formulas.
- fortunes
- R Fortunes
- fortunes
- R Fortunes
- forward
- Forward search
- ForwardSearch
- Forward Search using asymptotic theory
- fossil
- Palaeoecological and Palaeogeographical Analysis Tools
- FourCSeq
- Package analyse 4C sequencing data
- fourierin
- Computes Numeric Fourier Integrals
- fourPNO
- Bayesian 4 Parameter Item Response Model
- FourScores
- FourScores - A game for two players
- fpa
- Spatio-Temporal Fixation Pattern Analysis
- fpc
- Flexible Procedures for Clustering
- fpca
- Restricted MLE for Functional Principal Components Analysis
- FPCA2D
- Two Dimensional Functional Principal Component Analysis
- fpCompare
- Reliable Comparison of Floating Point Numbers
- FPDclustering
- PD-Clustering and Factor PD-Clustering
- fpop
- Segmentation using Optimal Partitioning and Function Pruning
- fPortfolio
- Rmetrics - Portfolio Selection and Optimization
- fPortfolio
- Rmetrics - Portfolio Selection and Optimization
- fPortfolioBacktest
- Rmetrics - Portfolio Backtesting
- fpow
- Computing the noncentrality parameter of the noncentral F distribution
- fpp
- Data for "Forecasting: principles and practice"
- fptdApprox
- Approximation of First-Passage-Time Densities for Diffusion Processes
- fracdiff
- Fractionally differenced ARIMA aka ARFIMA(p,d,q) models
- fracprolif
- Fraction Proliferation via a Quiescent Growth Model
- fractal
- Fractal Time Series Modeling and Analysis
- fractal
- Fractal Time Series Modeling and Analysis
- fractaldim
- Estimation of fractal dimensions
- FractalParameterEstimation
- Estimation of Parameters p and q for Randomized Sierpinski Carpet for [p-p-p-q]-Model
- fractalrock
- Generate fractal time series with non-normal returns distribution
- FRACTION
- Numeric number into fraction
- fractional
- Vulgar Fractions in R
- fragilityindex
- Fragility Index
- Fragman
- Fragment Analysis in R
- frailtyHL
- Frailty Models via H-likelihood
- frailtypack
- General Frailty Models: Shared, Joint and Nested Frailty Models with Prediction
- frailtySurv
- General Semiparametric Shared Frailty Model
- frair
- Tools for Functional Response Analysis
- Frames2
- Estimation in Dual Frame Surveys
- franc
- Detect the Language of Text
- FRAPO
- Financial Risk Modelling and Portfolio Optimisation with R
- FRAPO
- Financial Risk Modelling and Portfolio Optimisation with R
- FRB
- Fast and Robust Bootstrap
- frbs
- Fuzzy Rule-Based Systems for Classification and Regression Tasks
- FRCC
- Fast Regularized Canonical Correlation Analysis
- FREddyPro
- Post-Processing EddyPro Full Output File
- freeknotsplines
- Free-Knot Splines
- freesortphi
- Cramer's Phi Analysis of Freesort Data
- FreeSortR
- Free Sorting Data Analysis
- freestats
- Statistical algorithms used in common data mining course
- freesurfer
- Wrapper Functions for 'Freesurfer'
- FREGAT
- Family REGional Association Tests
- fRegression
- Rmetrics - Regression Based Decision and Prediction
- fRegression
- Rmetrics - Regression Based Decision and Prediction
- FREQ
- FREQ: Estimate population size from capture frequencies
- freqdist
- Frequency Distribution
- freqdom
- Frequency Domain Analysis for Multivariate Time Series
- freqdom
- Frequency Domain Analysis for Multivariate Time Series
- freqMAP
- Frequency Moving Average Plots (MAP) of Multinomial Data by a Continuous Covariate
- freqparcoord
- Novel Methods for Parallel Coordinates
- FreqProf
- Frequency Profiles Computing and Plotting
- freqweights
- Working with Frequency Tables
- FRESA.CAD
- Feature Selection Algorithms for Computer Aided Diagnosis
- FrF2
- Fractional Factorial Designs with 2-Level Factors
- FrF2.catlg128
- Catalogues of resolution IV 128 run 2-level fractional factorials up to 33 factors that do have 5-letter words
- FRGEpistasis
- Epistasis Analysis for Quantitative Traits by Functional Regression Model
- frm
- Regression Analysis of Fractional Responses
- frma
- Frozen RMA and Barcode
- frmaTools
- Frozen RMA Tools
- frmhet
- Regression Analysis of Fractional Responses Under Unobserved Heterogeneity
- frmpd
- Regression Analysis of Panel Fractional Responses
- frmqa
- The Generalized Hyperbolic Distribution, Related Distributions and Their Applications in Finance
- fromo
- Fast Robust Moments
- frontier
- Stochastic Frontier Analysis
- frontier
- Stochastic Frontier Analysis
- frontiles
- Partial Frontier Efficiency Analysis
- FRSstats
- FRS Statistics Group R Library
- frt
- Full Randomization Test
- FSA
- Simple Fisheries Stock Assessment Methods
- FSAdata
- Data to Support Fish Stock Assessment ('FSA') Package
- fscaret
- Automated Feature Selection from 'caret'
- FSelector
- Selecting Attributes
- FSelector
- Selecting attributes
- fsia
- Import and Analysis of OMR Data from FormScanner
- FSim
- A package to search functionally similar genes
- FSInteract
- Fast Searches for Interactions
- fslr
- Wrapper Functions for FSL ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')
- fso
- Fuzzy Set Ordination
- fSRM
- Social Relations Analyses with Roles ("Family SRM")
- FTICRMS
- Programs for Analyzing Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry Data
- ftnonpar
- Features and Strings for Nonparametric Regression
- fTrading
- Technical Trading Analysis
- fTrading
- Rmetrics - Trading and Rebalancing Financial Instruments
- ftree
- Fault Trees and Event Trees for Risk and Reliability Analysis
- FTRLProximal
- FTRL Proximal Implementation for Elastic Net Regression
- fts
- R interface to tslib (a time series library in c++)
- ftsa
- Functional Time Series Analysis
- ftsspec
- Spectral Density Estimation and Comparison for Functional Time Series
- fueleconomy
- EPA fuel economy data
- fugeR
- FUzzy GEnetic, a machine learning algorithm to construct prediction model based on fuzzy logic.
- fullexampledata
- Activated Region Fitting, fMRI data analysis (3D), additional dataset.
- fullfact
- Full Factorial Breeding Analysis
- fulltext
- Full Text of 'Scholarly' Articles Across Many Data Sources
- fun
- Use R for Fun
- fun
- Use R for Fun
- funcheck
- OBSOLETE: Run tests, where possible, on named optimization problem file.
- FunChIP
- Clustering and Alignment of ChIP-Seq peaks based on their shapes
- FunChisq
- Chi-Square and Exact Tests for Non-Parametric Functional Dependencies
- FunciSNP
- Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs
- FunCluster
- Functional Profiling of Microarray Expression Data
- Funclustering
- A package for functional data clustering.
- Funclustering
- A package for functional data clustering.
- FuncMap
- Hive Plots of R Package Function Calls
- funcreg
- Functional Regression Estimation
- functional
- Curry, Compose, and other higher-order functions
- functional
- Curry, Compose, and other higher-order functions
- FunctionalNetworks
- An algorithm for gene and gene set network inference
- functools
- Functional Programming in R
- funcy
- Functional Clustering Algorithms
- funData
- An S4 Class for Functional Data
- funFEM
- Clustering in the Discriminative Functional Subspace
- fungible
- Fungible Coefficients and Monte Carlo Functions
- funHDDC
- Model-based clustering in group-specific functional subspaces
- fUnitRoots
- Trends and Unit Roots
- fUnitRoots
- Rmetrics - Modelling Trends and Unit Roots
- funModeling
- Learn Data Science Through the "Data Science Live Book"
- funphylocom
- Functional traits, phylogenies, communities, simulations
- funr
- Simple Utility Providing Terminal Access to all R Functions
- funrar
- Functional Rarity Indices Computation
- funreg
- Functional Regression for Irregularly Timed Data
- FUNTA
- Functional Tangential Angle Pseudo-Depth
- funtimes
- Functions for Time Series Analysis
- furniture
- Furniture for Applied Quantitative Researchers
- fuse
- Framework for Understanding Structural Errors (FUSE)
- FuseBox
- Combining Classifiers
- fusedanova
- Fused-ANOVA
- fusedanova2
- Fused-ANOVA
- FusedPCA
- Community Detection via Fused Principal Component Analysis
- futile.any
- A Tiny Utility Providing Polymorphic Operations
- futile.logger
- A Logging Utility for R
- futile.matrix
- Random Matrix Generation and Manipulation
- futile.options
- Futile options management
- futile.paradigm
- A framework for working in a functional programming paradigm in R
- FUtils
- Felix's favorite functions
- future
- A Future API for R
- future.BatchJobs
- A Future for BatchJobs
- futureheatwaves
- Find, Characterize, and Explore Heat Waves in Climate Projections
- fuzzr
- Fuzz-Test R Functions
- FuzzyAHP
- (Fuzzy) AHP Calculation
- fuzzyFDR
- Exact calculation of fuzzy decision rules for multiple testing
- fuzzyforest
- Fuzzy Forests
- fuzzyjoin
- Join Tables Together on Inexact Matching
- FuzzyLP
- Fuzzy Linear Programming
- FuzzyMCDM
- Multi-Criteria Decision Making Methods for Fuzzy Data
- FuzzyNumbers
- Tools to deal with fuzzy numbers in R
- FuzzyNumbers
- Tools to Deal with Fuzzy Numbers
- Fuzzy.p.value
- Computing Fuzzy p-Value
- FuzzyR
- Fuzzy Logic Toolkit for R
- fuzzyRankTests
- Fuzzy Rank Tests and Confidence Intervals
- fuzzySim
- Fuzzy similarity in species distributions
- FuzzyStatProb
- Fuzzy Stationary Probabilities from a Sequence of Observations of an Unknown Markov Chain
- FuzzyToolkitUoN
- Type 1 Fuzzy Logic Toolkit
- fwdmsa
- Forward search for Mokken scale analysis
- FWDselect
- Selecting Variables in Regression Models
- fwi.fbp
- Fire Weather Index System and Fire Behaviour Prediction System Calculations
- fwi.fbp
- Fire Weather Index System and Fire Behaviour Prediction System Calculations
- fwsim
- Fisher-Wright Population Simulation
- fxregime
- Exchange Rate Regime Analysis
- fxregime
- Exchange Rate Regime Analysis
- G1DBN
- A package performing Dynamic Bayesian Network inference.
- g2f
- Find and Fill Gaps in Metabolic Networks
- G2Sd
- Grain-size Statistics and Description of Sediment
- G2Sd
- Grain-Size Statistics and Description of Sediment
- g4n
- graph for networks
- GA
- Genetic Algorithms
- GA4Stratification
- A genetic algorithm approach to determine stratum boundaries and sample sizes of each stratum in stratified sampling
- GAabbreviate
- Abbreviating Items Measures using Genetic Algorithms
- GABi
- Framework for Generalized Subspace Pattern Mining
- GAD
- GAD: Analysis of variance from general principles
- gada
- Genome Alteration Detection Algorithm (GADA)
- GaDiFPT
- First Passage Time Simulation for Gaussian Diffusion Processes
- gafit
- Genetic Algorithm for Curve Fitting
- gaga
- GaGa hierarchical model for high-throughput data analysis
- gage
- Generally Applicable Gene-set Enrichment for Pathway Analysis
- gaggle
- Broadcast data between R and Gaggle
- gaia
- GAIA: An R package for genomic analysis of significant chromosomal aberrations.
- gains
- Gains Table Package
- GAIPE
- Graphical Extension with Accuracy in Parameter Estimation (GAIPE)
- galts
- Genetic algorithms and C-steps based LTS (Least Trimmed Squares) estimation
- gam
- Generalized Additive Models
- gamair
- Data for "GAMs: An Introduction with R"
- gambin
- Fit the GamBin Model to Species Abundance Distributions
- GAMBoost
- Generalized linear and additive models by likelihood based boosting
- gamboostLSS
- Boosting Methods for 'GAMLSS'
- gamboostLSS
- Boosting Methods for GAMLSS
- gamboostMSM
- Estimating multistate models using gamboost()
- gamclass
- Functions and Data for a Course on Modern Regression and Classification
- GAMens
- Applies GAMbag, GAMrsm and GAMens Ensemble Classifiers for Binary Classification
- games
- Statistical Estimation of Game-Theoretic Models
- gamesNws
- Playing games using a NWS Server
- GameTheory
- Cooperative Game Theory
- GameTheoryAllocation
- Tools for Calculating Allocations in Game Theory
- gamlr
- Gamma Lasso Regression
- gamlss
- Generalised Additive Models for Location Scale and Shape
- gamlss.add
- Extra Additive Terms for GAMLSS Models
- gamlss.cens
- Fitting an Interval Response Variable Using `gamlss.family' Distributions
- gamlss.cens
- Fitting an interval response variable using gamlss.family distributions
- gamlss.data
- GAMLSS Data
- gamlss.data
- GAMLSS Data.
- gamlss.demo
- Demos for GAMLSS
- gamlss.demo
- Demos for GAMLSS
- gamlss.dist
- Distributions to be Used for GAMLSS Modelling
- gamlss.dist
- Distributions to be used for GAMLSS modelling.
- gamlss.mx
- A GAMLSS add on package for fitting mixture distributions
- gamlss.mx
- Fitting Mixture Distributions with GAMLSS
- gamlss.nl
- Fitting non linear parametric GAMLSS models
- gamlss.nl
- Fitting non linear parametric GAMLSS models
- gamlss.spatial
- Spatial Terms in GAMLSS Models
- gamlss.tr
- Generating and Fitting Truncated `gamlss.family' Distributions
- gamlss.tr
- Generating and fitting truncated (gamlss.family) distributions
- gamlss.util
- GAMLSS Utilities
- gamm4
- Generalized Additive Mixed Models using 'mgcv' and 'lme4'
- gammadnamix
- Package for intepretation of quantitative DNA mixtures
- Gammareg
- classic gamma regression: joint modeling of mean and shape parameters
- gammSlice
- Generalized additive mixed model analysis via slice sampling
- gamreg
- Robust and Sparse Regression via Gamma-Divergence
- gamsel
- Fit Regularization Path for Generalized Additive Models
- GANPA
- Gene Association Network-based Pathway Analysis
- GANPAdata
- The GANPA Datasets Package
- gaoptim
- Genetic Algorithm optimization for real-based and permutation-based problems
- gap
- Genetic Analysis Package
- gapfill
- Fill Missing Values in Satellite Data
- gapmap
- Functions for Drawing Gapped Cluster Heatmap with ggplot2
- gapminder
- Data from Gapminder
- GAprediction
- Prediction of gestational age with Illumina HumanMethylation450 data
- GAR
- Authorize and Request Google Analytics Data
- garfield
- GWAS Analysis of Regulatory or Functional Information Enrichment with LD correction
- GARPFRM
- Global Association of Risk Professionals: Financial Risk Manager
- GAS
- Generalized Autoregressive Score Models
- gaselect
- Genetic Algorithm (GA) for Variable Selection from High-Dimensional Data
- gaston
- Genetic Data Handling (QC, GRM, LD, PCA) & Linear Mixed Models
- gatepoints
- Easily Gate or Select Points on a Scatter Plot
- gaucho
- Genetic Algorithms for Understanding Clonal Heterogeneity and Ordering
- GauPro
- Gaussian Process Fitting
- gaussDiff
- Difference measures for multivariate Gaussian probability density functions
- gaussfacts
- The Greatest Mathematician Since Antiquity
- gaussquad
- Collection of functions for Gaussian quadrature
- gazepath
- Parse Eye-Tracking Data into Fixations
- gazepath
- Parse Eye-Tracking Data into Fixations
- gb
- Generalize Lambda Distribution and Generalized Bootstrapping
- GB2
- Generalized Beta Distribution of the Second Kind: Properties, Likelihood, Estimation
- gbm
- Generalized Boosted Regression Models
- gbm2sas
- Convert GBM Object Trees to SAS Code
- gbRd
- Utilities for processing Rd objects and files
- gbs2ploidy
- Inference of Ploidy from (Genotyping-by-Sequencing) GBS Data
- gbts
- Hyperparameter Search for Gradient Boosted Trees
- gbutils
- Simulation of Real and Complex Numbers and Small Programming Utilities
- GCAI.bias
- Guided Correction Approach for Inherited bias (GCAI.bias)
- gCat
- Graph-based two-sample tests for categorical data
- gcatest
- Genotype Conditional Association TEST
- gcbd
- 'GPU'/CPU Benchmarking in Debian-Based Systems
- GCD
- Global Charcoal Database
- gcdnet
- LASSO and (adaptive) Elastic-Net penalized least squares, logistic regression, HHSVM and squared hinge loss SVM using a fast GCD algorithm
- gcensus
- Census populations and polygons
- gcerisk
- Generalized Competing Event Model
- gcKrig
- Analyze and Interpolate Geostatistical Count Data using Gaussian Copula
- gclus
- Clustering Graphics
- gCMAP
- Tools for Connectivity Map-like analyses
- gCMAPWeb
- A web interface for gene-set enrichment analyses
- gcmdiag
- Growth curve modeling diagnostics
- gcmr
- Gaussian Copula Marginal Regression
- gconcord
- Concord method for Graphical Model Selection
- gcookbook
- Data for "R Graphics Cookbook"
- GCPM
- Generalized Credit Portfolio Model
- gCrisprTools
- Suite of Functions for Pooled Crispr Screen QC and Analysis
- gcrma
- Background Adjustment Using Sequence Information
- GDAdata
- Datasets for the Book Graphical Data Analysis with R
- gdalUtils
- Wrappers for the Geospatial Data Abstraction Library (GDAL) Utilities
- gdalUtils
- Wrappers for the Geospatial Data Abstraction Library (GDAL) Utilities
- gdata
- Various R Programming Tools for Data Manipulation
- gdata
- Various R Programming Tools for Data Manipulation
- g.data
- Delayed-Data Packages
- GDAtools
- A toolbox for the analysis of categorical data in social sciences, and especially Geometric Data Analysis.
- GDELTtools
- Download, slice, and normalize GDELT data
- gdimap
- Generalized Diffusion Magnetic Resonance Imaging
- gdistance
- Distances and Routes on Geographical Grids
- gdistance
- Distances and Routes on Geographical Grids
- gdm
- Create Generalised Dissimilarity Models
- gdm
- Functions for Generalized Dissimilarity Modeling
- Gdm01
- Create Generalised Dissimilarity Models
- gdmp
- Genomic Data Management
- gdns
- Tools to Work with Google DNS Over HTTPS API
- gdpc
- Generalized Dynamic Principal Components
- gds
- Descriptive Statistics of Grouped Data
- GDS
- Genome-Wide Differential Splicing Detection
- gdsfmt
- R Interface to CoreArray Genomic Data Structure (GDS) Files
- gdsfmt
- R Interface to CoreArray Genomic Data Structure (GDS) files
- gdtools
- Utilities for Graphical Rendering
- gear
- Geostatistical Analysis in R
- gee
- Generalized Estimation Equation Solver
- GEEaSPU
- Adaptive Association Tests for Multiple Phenotypes using Generalized Estimating Equations (GEE)
- geecc
- Gene Set Enrichment Analysis Extended to Contingency Cubes
- geeM
- Solve Generalized Estimating Equations
- GEEmediate
- Mediation Analysis for Generalized Linear Models Using the Difference Method
- geeni
- gee in bounded memory, data from disk etc.
- geepack
- Generalized Estimating Equation Package
- geesmv
- Modified Variance Estimators for Generalized Estimating Equations
- geigen
- Calculate Generalized Eigenvalues, the Generalized Schur Decomposition and the Generalized Singular Value Decomposition of a Matrix Pair with Lapack
- geiger
- Analysis of Evolutionary Diversification
- GEint
- Misspecified Models for Gene-Environment Interaction
- gelnet
- Generalized Elastic Nets
- gem
- File Conversion for 'Gem Infrasound Logger'
- GEM
- GEM: fast association study for the interplay of Gene, Environment and Methylation
- gemlog
- File Conversion for 'Gem Infrasound Logger'
- gems
- Generalized Multistate Simulation Model
- gemtc
- Network Meta-Analysis Using Bayesian Methods
- gemtc.jar
- GeMTC Java binary
- GenABEL
- genome-wide SNP association analysis
- GenABEL.data
- Package contains data which is used by GenABEL example and test functions
- GenABEL.data
- Data Used by the GenABEL Examples and Test Functions
- genalg
- R Based Genetic Algorithm
- GenAlgo
- Classes and Methods to Use Genetic Algorithms for Feature Selection
- genArise
- Microarray Analysis tool
- genasis
- Global ENvironmental ASsessment Information System (GENASIS) computational tools
- genbankr
- Parsing GenBank files into semantically useful objects
- GenBinomApps
- Clopper-Pearson Confidence Interval and Generalized Binomial Distribution
- GenCAT
- Genetic Class Association Testing
- gencve
- General Cross Validation Engine
- gendata
- Generate and Modify Synthetic Datasets
- gender
- Predict Gender from Names Using Historical Data
- genderizeR
- Gender Prediction Based on First Names
- genderNames
- Client for the Genderize API That Determines the Gender of Names
- gendist
- Generated Probability Distribution Models
- GeneAnswers
- Integrated Interpretation of Genes
- GENEAread
- Package For Reading Binary files
- geneAttribution
- Identification of candidate genes associated with genetic variation
- GeneBreak
- Gene Break Detection
- GeneCycle
- Identification of Periodically Expressed Genes
- GENE.E
- Interact with GENE-E from R
- GeneExpressionSignature
- Gene Expression Signature based Similarity Metric
- GeneF
- Package for Generalized F-statistics
- GeneFeST
- Bayesian calculation of gene-specific FST from genomic SNP data
- genefilter
- genefilter: methods for filtering genes from high-throughput experiments
- genefu
- Computation of Gene Expression-Based Signatures in Breast Cancer
- GeneGA
- Design gene based on both mRNA secondary structure and codon usage bias using Genetic algorithm
- GeneGeneInteR
- Tools for Testing Gene-Gene Interaction at the Gene Level
- Geneland
- Detection of Structure from Multilocus Genetic Data
- geneListPie
- Profiling a gene list into GOslim or KEGG function pie
- GeneMeta
- MetaAnalysis for High Throughput Experiments
- genemodel
- Gene Model Plotting in R
- GeneNet
- Modeling and Inferring Gene Networks
- geneNetBP
- Belief Propagation in Genotype-Phenotype Networks
- geneNetBP
- Belief Propagation in Genotype-Phenotype Networks
- GeneNetworkBuilder
- Build Regulatory Network from ChIP-chip/ChIP-seq and Expression Data
- GeneOverlap
- Test and visualize gene overlaps
- genepi
- Genetic Epidemiology Design and Inference
- geneplast
- Evolutionary and plasticity analysis based on orthologous groups distribution
- geneplotter
- Graphics related functions for Bioconductor
- generalCorr
- Generalized Correlations and Initial Causal Path
- generalhoslem
- Goodness of Fit Tests for Logistic Regression Models
- GeneralizedHyperbolic
- The Generalized Hyperbolic Distribution
- GeneralizedHyperbolic
- The Generalized Hyperbolic Distribution
- GeneralizedLambda
- The Generalized Lambda Distribution
- GeneralOaxaca
- Blinder-Oaxaca Decomposition for Generalized Linear Model
- GeneralTree
- General Tree Data Structure
- generator
- Generate Data Containing Fake Personally Identifiable Information
- geneRecommender
- A gene recommender algorithm to identify genes coexpressed with a query set of genes
- GeneReg
- Construct time delay gene regulatory network
- GeneRegionScan
- GeneRegionScan
- geneRxCluster
- gRx Differential Clustering
- GeneSelectMMD
- Gene selection based on the marginal distributions of gene profiles that characterized by a mixture of three-component multivariate distributions
- GeneSelector
- Stability and Aggregation of ranked gene lists
- geneSignatureFinder
- A Gene-signatures finder tools
- GENESIS
- GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
- geneSLOPE
- Genome-Wide Association Study with SLOPE
- geNetClassifier
- Classify diseases and build associated gene networks using gene expression profiles
- genetics
- Population Genetics
- GeneticsDesign
- Functions for designing genetics studies
- GeneticsPed
- Pedigree and genetic relationship functions
- GeneticSubsetter
- Identify Favorable Subsets of Germplasm Collections
- GeneticTools
- Collection of Genetic Data Analysis Tools
- GeNetIt
- Spatial Graph-Theoretic Genetic Gravity Modelling
- geneXtendeR
- Optimal Gene Extensions From Histone Modification ChIP-seq Data
- GenForImp
- The Forward Imputation: A Sequential Distance-Based Approach for Imputing Missing Data
- genie
- A New, Fast, and Outlier Resistant Hierarchical Clustering Algorithm
- GenKern
- Functions for generating and manipulating binned kernel density estimates
- genlasso
- Path algorithm for generalized lasso problems
- GENLIB
- Genealogical Data Analysis
- genMOSS
- Functions for the Bayesian Analysis of GWAS Data
- genMOSSplus
- Application of MOSS algorithm to genome-wide association study (GWAS)
- genoCN
- genotyping and copy number study tools
- GenoGAM
- A GAM based framework for analysis of ChIP-Seq data
- genomation
- Summary, annotation and visualization of genomic data
- GenomeGraphs
- Plotting genomic information from Ensembl
- GenomeInfoDb
- Utilities for manipulating chromosome and other 'seqname' identifiers
- genomeIntervals
- Operations on genomic intervals
- genomeplot
- 'Plot genome wide values for all chromosomes'
- genomes
- Genome sequencing project metadata
- GenomicAlignments
- Representation and manipulation of short genomic alignments
- GenomicFeatures
- Tools for making and manipulating transcript centric annotations
- GenomicFiles
- Distributed computing by file or by range
- GenomicInteractions
- R package for handling genomic interaction data
- genomicper
- Circular Genomic Permutation using Gwas p-Values of Association
- GenomicRanges
- Representation and manipulation of genomic intervals and variables defined along a genome
- GenomicTools
- Collection of Tools for Genomic Data Analysis
- GenomicTuples
- Representation and Manipulation of Genomic Tuples
- Genominator
- Analyze, manage and store genomic data
- genoPlotR
- Plot Publication-Grade Gene and Genome Maps
- genoPlotR
- Plot Publication-Grade Gene and Genome Maps
- GenOrd
- Simulation of Discrete Random Variables with Given Correlation Matrix and Marginal Distributions
- genoset
- A RangedSummarizedExperiment with methods for copy number analysis
- genotypeeval
- QA/QC of a gVCF or VCF file
- genpathmox
- Generalized PATHMOX Algorithm for PLS-PM, LS and LAD Regression
- genphen
- A tool for quantification of associations between genotypes and phenotypes with statistical learning techniques such as random forests and support vector machines as well as with Bayesian inference using hierarchical models
- GenRank
- Candidate gene prioritization based on convergent evidence
- genridge
- Generalized Ridge Trace Plots for Ridge Regression
- GenSA
- R Functions for Generalized Simulated Annealing
- gensemble
- generalized ensemble methods
- gensphere
- Generalized Spherical Distributions
- genSurv
- Generating Multi-State Survival Data
- genutils
- IRRI Geography Lab - General Utilities
- GenVisR
- Genomic Visualizations in R
- GenWin
- Spline Based Window Boundaries for Genomic Analyses
- geo
- Draw and Annotate Maps, Especially Charts of the North Atlantic
- geo
- Draw and Annotate Maps, Especially Charts of the North Atlantic
- geoaxe
- Split 'Geospatial' Objects into Pieces
- geoBayes
- Analysis of Geostatistical Data using Bayes and Empirical Bayes Methods
- GeoBoxplot
- Geographic Box Plot
- geocodeHERE
- Wrapper for Nokia's HERE Geocoding API
- GeoConst
- Datasets and helper functions for commonly required values in geochemistry.
- geoCount
- Analysis and Modeling for Geostatistical Count Data
- geoCount
- Analysis and Modeling for Geostatistical Count Data
- GeoDE
- A geometrical Approach to Differential expression and gene-set enrichment
- geoelectrics
- 3D-Visualization of Geoelectric Resistivity Measurement Profiles
- geoextras
- Extras for the 'geo' package
- geofd
- Spatial Prediction for Function Value Data
- geoGAM
- Select Sparse Geoadditive Models for Spatial Prediction
- GeoGenetix
- Quantification of the effect of geographic versus environmental isolation on genetic differentiation
- geohash
- Tools for Geohash Creation and Manipulation
- geojson
- Classes for 'GeoJSON'
- geojsonio
- Convert Data from and to 'geoJSON' or 'topoJSON'
- geojsonlint
- Tools for Validating 'GeoJSON'
- geoknife
- Web-Processing of Large Gridded Datasets
- GeoLight
- Analysis of Light Based Geolocator Data
- GEOmap
- Topographic and Geologic Mapping
- geomapdata
- Data for topographic and Geologic Mapping
- GeomComb
- (Geometric) Forecast Combination Methods
- GEOmetadb
- A compilation of metadata from NCBI GEO
- geometry
- Mesh Generation and Surface Tesselation
- geometry
- Mesh Generation and Surface Tesselation
- geomnet
- Network Visualization in the 'ggplot2' Framework
- geomorph
- Geometric Morphometric Analyses of 2D/3D Landmark Data
- geonames
- Interface to www.geonames.org web service
- geonames
- Interface to www.geonames.org web service
- geoparser
- Interface to the Geoparser.io API for Identifying and Disambiguating Places Mentioned in Text
- geophys
- Geophysics, Continuum Mechanics, Mogi Models, Gravity
- GEOquery
- Get data from NCBI Gene Expression Omnibus (GEO)
- geoR
- Analysis of Geostatistical Data
- geoRExtended
- An extension of the geoR package.
- geoRglm
- A Package for Generalised Linear Spatial Models
- GeoRiskR
- Data and functions for Geotechnical Risk Assessment
- georob
- Robust Geostatistical Analysis of Spatial Data
- georob
- Robust Geostatistical Analysis of Spatial Data
- geoscale
- Geological Time Scale Plotting
- GEOsearch
- GEOsearch
- geospacom
- Facilitate Generating of Distance Matrices Used in Package 'spacom' and Plotting Data on Maps
- geosphere
- Spherical Trigonometry
- geospt
- Geostatistical Analysis and Design of Optimal Spatial Sampling Networks
- geospt
- Geostatistical Analysis and Design of Optimal Spatial Sampling Networks
- geosptdb
- Spatio-Temporal; Inverse Distance Weighting and Radial Basis Functions with Distance-Based Regression
- geostatsp
- Geostatistical Modelling with Likelihood and Bayes
- geostatsp
- Geostatistical Modelling with Likelihood and Bayes
- GEOsubmission
- Prepares microarray data for submission to GEO
- geotech
- Geotechnical Engineering
- geotools
- Geo tools
- geotopbricks
- An R Plug-in for the Distributed Hydrological Model GEOtop
- geovec
- Manipulation of geographic vector (points, lines, polygons) data
- GeoXp
- Interactive exploratory spatial data analysis
- geozoo
- Zoo of Geometric Objects
- gepaf
- Google Encoded Polyline Algorithm Format
- GERGM
- Estimation and Fit Diagnostics for Generalized Exponential Random Graph Models
- gesca
- Generalized Structured Component Analysis (GSCA)
- GESE
- Gene-Based Segregation Test
- gesis
- R Client for GESIS Data Catalogue (DBK)
- gespeR
- Gene-Specific Phenotype EstimatoR
- GESTr
- Gene Expression State Transformation
- GetHFData
- Download and Aggregate High Frequency Trading Data from Bovespa
- getlandsat
- Get Landsat 8 Data from Amazon Public Data Sets
- getMet
- Get Meteorological Data for Hydrologic Models
- getMODIS
- Utility package for creating or updating a local user-defined subsets of the global MODIS grid data online archive. Pre-processing functionalities for MODIS grid data using MODIS Reporjection Tool (MRT)
- getopt
- C-like getopt behavior.
- getopt
- C-like getopt behavior.
- GetoptLong
- Parsing Command-Line Arguments and Variable Interpolation
- getPass
- Masked User Input
- GetR
- GetR: Calculate Guttman error trees in R
- gets
- General-to-Specific (GETS) Modelling and Indicator Saturation Methods
- GetTDData
- Get Data for Brazilian Bonds (Tesouro Direto)
- gettingtothebottom
- Learning Optimization and Machine Learning for Statistics
- gettz
- Get the Timezone Information
- GEVcdn
- GEV Conditional Density Estimation Network
- GEVStableGarch
- ARMA-GARCH/APARCH Models with GEV and Stable Distributions
- GEWIST
- Gene Environment Wide Interaction Search Threshold
- GExMap
- A visual, intuitive, easy to use software giving access to a new type of information buried into your microarray data.
- GFA
- Group Factor Analysis
- gfcanalysis
- Tools for Working with Hansen et al. Global Forest Change Dataset
- GFD
- Tests for General Factorial Designs
- GGally
- Extension to 'ggplot2'
- ggalt
- Extra Coordinate Systems, Geoms and Statistical Transformations for 'ggplot2'
- GGBase
- GGBase infrastructure for genetics of gene expression package GGtools
- ggbeeswarm
- Categorical Scatter (Violin Point) Plots
- ggbio
- Visualization tools for genomic data.
- ggcorrplot
- Visualization of a Correlation Matrix using 'ggplot2'
- ggcyto
- Visualize Cytometry data with ggplot
- ggdendro
- Create Dendrograms and Tree Diagrams Using 'ggplot2'
- ggdmc
- Dynamic Model of Choice with Parallel Computation, and C++ Capabilities
- gge
- Genotype Plus Genotype-by-Environment Biplots
- GGEBiplotGUI
- Interactive GGE Biplots in R
- ggene
- Semivariogram and Exploratory Spatial Analysis of Genetic Data
- ggenealogy
- Visualization Tools for Genealogical Data
- ggExtra
- Add Marginal Histograms to 'ggplot2', and More 'ggplot2' Enhancements
- ggforce
- Accelerating 'ggplot2'
- ggfortify
- Data Visualization Tools for Statistical Analysis Results
- ggghost
- Capture the Spirit of Your 'ggplot2' Calls
- ggguitar
- Utilities for Creating Guitar Tablature
- GGIR
- Raw Accelerometer Data Analysis
- ggiraph
- Make 'ggplot2' Graphics Interactive
- ggiraphExtra
- Make Interactive 'ggplot2'. Extension to 'ggplot2' and 'ggiraph'
- gglasso
- Group Lasso Penalized Learning Using A Unified BMD Algorithm
- gglogo
- Geom for Logo Sequence Plots
- ggloop
- Create 'ggplot2' Plots in a Loop
- ggm
- Functions for graphical Markov models
- ggmap
- Spatial Visualization with ggplot2
- ggmcmc
- Tools for Analyzing MCMC Simulations from Bayesian Inference
- GGMridge
- Gaussian Graphical Models Using Ridge Penalty Followed by Thresholding and Reestimation
- GGMselect
- Gaussian Graphs Models Selection
- ggnetwork
- Geometries to Plot Networks with 'ggplot2'
- ggparallel
- Variations of Parallel Coordinate Plots for Categorical Data
- ggplot2
- Create Elegant Data Visualisations Using the Grammar of Graphics
- ggplot2movies
- Movies Data
- ggplotFL
- Using ggplot2 in FLR
- ggpmisc
- Miscellaneous Extensions to 'ggplot2'
- ggpolypath
- Polygons with Holes for the Grammar of Graphics
- ggpubr
- 'ggplot2' Based Publication Ready Plots
- ggRandomForests
- Visually Exploring Random Forests
- ggraptR
- Allows Interactive Visualization of Data Through a Web Browser GUI
- ggrepel
- Repulsive Text and Label Geoms for 'ggplot2'
- ggROC
- package for roc curve plot with ggplot2
- ggsci
- Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'
- ggseas
- 'stats' for Seasonal Adjustment on the Fly with 'ggplot2'
- ggsn
- North Symbols and Scale Bars for Maps Created with 'ggplot2' or 'ggmap'
- ggspectra
- Extensions to 'ggplot2' for Radiation Spectra
- ggstance
- Horizontal 'ggplot2' Components
- ggswissmaps
- Offers Various Swiss Maps as Data Frames and 'ggplot2' Objects
- ggtern
- An Extension to 'ggplot2', for the Creation of Ternary Diagrams
- ggThemeAssist
- Add-in to Customize 'ggplot2' Themes
- ggthemes
- Extra Themes, Scales and Geoms for 'ggplot2'
- GGtools
- software and data for analyses in genetics of gene expression
- ggtree
- an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data
- ggvis
- Interactive Grammar of Graphics
- GHap
- Genome-Wide Haplotyping
- ghit
- Lightweight GitHub Package Installer
- GHQp
- Gauss Hermite Quadrature with pruning.
- ghyp
- A package on the generalized hyperbolic distribution and its special cases
- ghyp
- A Package on Generalized Hyperbolic Distribution and Its Special Cases
- GiANT
- Gene Set Uncertainty in Enrichment Analysis
- GibbsACOV
- Gibbs Sampler for One-Way Mixed-Effects ANOVA and ANCOVA Models
- gibbs.met
- Naive Gibbs Sampling with Metropolis Steps
- Gibi
- What the package does (short line)
- Gifi
- Gifi Methods for Categorical Multivariate Analysis
- GIGrvg
- Random Variate Generator for the GIG Distribution
- GillespieSSA
- Gillespie's Stochastic Simulation Algorithm (SSA)
- gimme
- Group Iterative Multiple Model Estimation
- gimms
- Download and Process GIMMS NDVI3g Data
- GiNA
- High Throughput Phenotyping
- GiniWegNeg
- Computing the Gini-Based Coefficients for Weighted and Negative Attributes
- gIPFrm
- Generalized Iterative Proportional Fitting for Relational Models
- GiRaF
- Gibbs Random Fields Analysis
- girafe
- Genome Intervals and Read Alignments for Functional Exploration
- giRaph
- The giRaph package for graph representation in R
- GISTools
- Some further GIS capabilities for R
- gistr
- Work with 'GitHub' 'Gists'
- git2r
- Provides Access to Git Repositories
- gitgadget
- Rstudio Addin for Version Control and Assignment Management using Git
- githubinstall
- A Helpful Way to Install R Packages Hosted on GitHub
- gitlabr
- Access to the Gitlab API
- gitter
- Quantification of Pinned Microbial Cultures
- givitiR
- The GiViTI Calibration Test and Belt
- Giza
- Constructing panels of population pyramid plots based on lattice
- gjam
- Generalized Joint Attribute Modeling
- GK2011
- Gaines and Kuklinski (2011) Estimators for Hybrid Experiments
- gkmSVM
- Gapped-Kmer Support Vector Machine
- GLAD
- Gain and Loss Analysis of DNA
- glamlasso
- Penalization in Large Scale Generalized Linear Array Models
- glarma
- Generalized Linear Autoregressive Moving Average Models
- glasso
- Graphical lasso- estimation of Gaussian graphical models
- glba
- General Linear Ballistic Accumulator Models
- glba
- General Linear Ballistic Accumulator Models
- glcm
- Calculate Textures from Grey-Level Co-Occurrence Matrices (GLCMs)
- gld
- Estimation and Use of the Generalised (Tukey) Lambda Distribution
- GLDEX
- Fitting Single and Mixture of Generalised Lambda Distributions (RS and FMKL) using Various Methods
- gldist
- An Asymmetry-Steepness Parameterization of the Generalized Lambda Distribution.
- gldist
- An Asymmetry-Steepness Parameterization of the Generalized Lambda Distribution.
- GLDreg
- Fit GLD Regression Model and GLD Quantile Regression Model to Empirical Data
- Glimma
- Interactive HTML graphics
- glinternet
- Learning Interactions via Hierarchical Group-Lasso Regularization
- gllm
- Generalised log-linear model
- glm2
- Fitting Generalized Linear Models
- glmbb
- All Hierarchical or Graphical Models for Generalized Linear Model
- glmBfp
- Bayesian Fractional Polynomials for GLMs
- glmBfp
- Bayesian Fractional Polynomials for GLMs
- glmc
- Fitting Generalized Linear Models Subject to Constraints
- glm.ddR
- Distributed 'glm' for Big Data using 'ddR' API
- glmdm
- R Code for Simulation of GLMDM
- glmertree
- Generalized Linear Mixed Model Trees
- glmgraph
- Graph-Constrained Regularization for Sparse Generalized Linear Models
- glmlep
- Fit GLM with LEP-based penalized maximum likelihood
- glmm
- Generalized Linear Mixed Models via Monte Carlo Likelihood Approximation
- glmmADMB
- Generalized Linear Mixed Models using 'AD Model Builder'
- glmmBUGS
- Generalised Linear Mixed Models with BUGS and JAGS
- glmmBUGS
- Generalised Linear Mixed Models with BUGS and JAGS
- glmmGS
- Gauss-Seidel Generalized Linear Mixed Model solver
- glmmixedlasso
- Generalized Linear Mixed Models with Lasso
- glmmLasso
- Variable Selection for Generalized Linear Mixed Models by L1-Penalized Estimation
- glmmML
- Generalized linear models with clustering
- GLMMRR
- Generalized Linear Mixed Model (GLMM) for Binary Randomized Response Data
- glmmsr
- Fit a Generalized Linear Mixed Model
- glmnet
- Lasso and Elastic-Net Regularized Generalized Linear Models
- glmnetcr
- Fit a penalized constrained continuation ratio model for predicting an ordinal response
- glmpath
- L1 Regularization Path for Generalized Linear Models and Cox Proportional Hazards Model
- glmpathcr
- Fit a penalized continuation ratio model for predicting an ordinal response.
- glm.predict
- Predicted Values and Discrete Changes for GLM
- glmulti
- Model selection and multimodel inference made easy
- glmvsd
- Variable Selection Deviation Measures and Instability Tests for High-Dimensional Generalized Linear Models
- glmx
- Generalized Linear Models Extended
- glmx
- Generalized Linear Models Extended
- GlobalAncova
- Calculates a global test for differential gene expression between groups
- globalboosttest
- Testing the additional predictive value of high-dimensional data
- globalboosttest
- Testing the additional predictive value of high-dimensional data
- GlobalDeviance
- Global Deviance Permutation Tests
- GlobalFit
- Bi-Level Optimization of Metabolic Network Models
- globalGSA
- Global Gene-Set Analysis for Association Studies.
- GlobalOptions
- Generate Functions to Get or Set Global Options
- globalOptTests
- Objective functions for benchmarking the performance of global optimization algorithms
- globals
- Identify Global Objects in R Expressions
- globalSeq
- Testing for association between RNA-Seq and high-dimensional data
- globaltest
- Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing
- globe
- Plot 2D and 3D Views of the Earth, Including Major Coastline
- glogis
- Fitting and Testing Generalized Logistic Distributions
- glogis
- Fitting and Testing Generalized Logistic Distributions
- GLoMo
- Naive General Location Model
- glpkAPI
- R Interface to C API of GLPK
- glrt
- Generalized Logrank Tests for Interval-censored Failure Time Data
- GLSME
- Generalized Least Squares with Measurement Error
- glucpack
- glucpack
- glycanr
- Tools for Analysing N-Glycan Data
- gmailr
- Access the Gmail RESTful API
- gmapR
- An R interface to the GMAP/GSNAP/GSTRUCT suite
- gmapsdistance
- Distance and Travel Time Between Two Points from Google Maps
- gmatrix
- GPU Computing in R
- GMCM
- Fast Estimation of Gaussian Mixture Copula Models
- gMCP
- Graph Based Multiple Comparison Procedures
- gMCP
- Graph Based Multiple Comparison Procedures
- GMD
- Generalized Minimum Distance of distributions
- gmDatabase
- Accessing a Geometallurgical Database with R
- GMDH
- Short Term Forecasting via GMDH-Type Neural Network Algorithms
- Gmedian
- Geometric Median, k-Median Clustering and Robust Median PCA
- gmeta
- Meta-Analysis via a Unified Framework of Confidence Distribution
- Gmisc
- Descriptive Statistics, Transition Plots, and More
- gmkin
- Graphical User Interface for Fitting Kinetic Models to Chemical Degradation Data
- gmm
- Generalized Method of Moments and Generalized Empirical Likelihood
- gmm
- Generalized Method of Moments and Generalized Empirical Likelihood
- GMMBoost
- Likelihood-based Boosting for Generalized mixed models
- gmnl
- Multinomial Logit Models with Random Parameters
- gmodels
- Various R Programming Tools for Model Fitting
- gmp
- Multiple Precision Arithmetic
- gmpm
- Generalized Multilevel Permutation Models
- GMRP
- GWAS-based Mendelian Randomization and Path Analyses
- gmt
- Interface between GMT Map-Making Software and R
- gmum.r
- GMUM Machine Learning Group Package
- gmwm
- Generalized Method of Wavelet Moments
- gMWT
- Generalized Mann-Whitney Type Tests
- GNE
- Computation of Generalized Nash Equilibria
- gnlm
- Generalized Nonlinear Regression Models
- gnm
- Generalized Nonlinear Models
- gnmf
- Generalized Non-negative Matrix Factorization Based on Renyi Divergence
- gnmf
- Generalized Non-Negative Matrix Factorization Based on Renyi Divergence
- gnumeric
- Read Data from Files Readable by 'gnumeric'
- goalprog
- Weighted and lexicographical goal programming and optimization
- goeveg
- Functions for Community Data and Ordinations
- GOexpress
- Visualise microarray and RNAseq data using gene ontology annotations
- gof
- Model-diagnostics based on cumulative residuals
- gof
- Model-diagnostics based on cumulative residuals
- gofCopula
- Goodness-of-Fit Tests for Copulae
- GoFKernel
- Testing Goodness-of-Fit with the Kernel Density Estimator
- GofKmt
- Khmaladze Martingale Transformation Goodness-of-Fit Test
- goft
- Tests of Fit for some Probability Distributions
- goftest
- Classical Goodness-of-Fit Tests for Univariate Distributions
- GOFunction
- GO-function: deriving biologcially relevant functions from statistically significant functions
- gogamer
- Go Game Data Parser
- GOGANPA
- GO-Functional-Network-based Gene-Set-Analysis
- gogarch
- Generalized Orthogonal GARCH (GO-GARCH) models
- gogarch
- Generalized Orthogonal GARCH (GO-GARCH) models
- goldi
- Gene Ontology Label Discernment and Identification
- GoodmanKruskal
- Association Analysis for Categorical Variables
- googleAnalyticsR
- Google Analytics API into R
- googleAuthR
- Easy Authentication with Google OAuth2 API
- googleCloudStorageR
- R Interface with Google Cloud Storage
- googleComputeEngineR
- R Interface with Google Compute Engine
- googleformr
- Collect Data Programmatically by POST Methods to Google Forms
- GoogleGenomics
- R Client for Google Genomics API
- googlePublicData
- Working with Google Public Data Explorer DSPL Metadata Files
- googlesheets
- Manage Google Spreadsheets from R
- googleVis
- R Interface to Google Charts
- googleway
- Retrieves Data from Google Maps APIs
- GOplot
- Visualization of Functional Analysis Data
- GOpro
- Find the most characteristic gene ontology terms for groups of human genes
- goProfiles
- goProfiles: an R package for the statistical analysis of functional profiles
- GORCure
- Fit Generalized Odds Rate Mixture Cure Model with Interval Censored Data
- goric
- Generalized Order-Restricted Information Criterion
- GOSemSim
- GO-terms Semantic Similarity Measures
- goseq
- Gene Ontology analyser for RNA-seq and other length biased data
- GOSim
- Computation of functional similarities between GO terms and gene products; GO enrichment analysis
- GOstats
- Tools for manipulating GO and microarrays.
- GOsummaries
- Word cloud summaries of GO enrichment analysis
- GOTHiC
- Binomial test for Hi-C data analysis
- goTools
- Functions for Gene Ontology database
- govStatJPN
- functions to get public survey data in Japan
- gower
- Gower's Distance
- gpairs
- gpairs: The Generalized Pairs Plot
- gpairs
- gpairs: The Generalized Pairs Plot
- GPareto
- Gaussian Processes for Pareto Front Estimation and Optimization
- GPArotation
- GPA Factor Rotation
- GPArotation
- GPA Factor Rotation
- GPC
- Generalized Polynomial Chaos
- gPCA
- Batch Effect Detection via Guided Principal Components Analysis
- gpclib
- General Polygon Clipping Library for R
- GPCSIV
- GPCSIV, Generalized Principal Component of Symbolic Interval variables
- gpDDE
- General Profiling Method for Delay Differential Equation
- gPdtest
- Bootstrap goodness-of-fit test for the generalized Pareto distribution
- GPFDA
- Apply Gaussian Process in Functional data analysis
- GPfit
- Gaussian Processes Modeling
- gpg
- GNU Privacy Guard for R
- gpk
- 100 Data Sets for Statistics Education
- gplm
- Generalized Partial Linear Models (GPLM)
- gplots
- Various R Programming Tools for Plotting Data
- gplots
- Various R Programming Tools for Plotting Data
- gpls
- Classification using generalized partial least squares
- GPLTR
- Generalized Partially Linear Tree-Based Regression Model
- gpmap
- Analysing and plotting genotype-phenotype maps
- gpr
- A Minimalistic package to apply Gaussian Process in R
- GPrank
- Gaussian Process Ranking of Multiple Time Series
- gprege
- Gaussian Process Ranking and Estimation of Gene Expression time-series
- gProfileR
- Interface to the 'g:Profiler' Toolkit
- GPseq
- gpseq: Using the generalized Poisson distribution to model sequence read counts from high throughput sequencing experiments
- gptk
- Gaussian Processes Tool-Kit
- gpuR
- GPU Functions for R Objects
- gputools
- A Few GPU Enabled Functions
- GPvam
- Maximum Likelihood Estimation of Multiple Membership Mixed Models Used in Value-Added Modeling
- Gqr
- Determine knots and weights for Gaussian quadrature rules
- gQTLBase
- gQTLBase: infrastructure for eQTL, mQTL and similar studies
- gQTLstats
- gQTLstats: computationally efficient analysis for eQTL and allied studies
- gquad
- G Quadruplex Motif Prediction Tool
- gr2
- Graphical R$^2$
- Grace
- Graph-Constrained Estimation and Hypothesis Tests
- grade
- Binary Grading functions for R.
- gradientForest
- Random Forest functions for the Census of Marine Life synthesis project.
- GRaF
- Species distribution modelling using latent Gaussian random fields
- gRain
- Graphical Independence Networks
- grainscape
- Grains of connectivity and minimum planar graph modelling of landscape connectivity (Windows only)
- gramEvol
- Grammatical Evolution for R
- GrammR
- Graphical Representation and Modeling of Metagenomic Reads
- GRANBase
- Creating Continuously Integrated Package Repositories from Manifests
- granova
- Graphical Analysis of Variance
- granovaGG
- Graphical Analysis of Variance Using ggplot2
- GRAPE
- Gene-Ranking Analysis of Pathway Expression
- gRapfa
- Acyclic Probabilistic Finite Automata
- graph
- graph: A package to handle graph data structures
- GraphAlignment
- GraphAlignment
- GraphAT
- Graph Theoretic Association Tests
- gRapHD
- Efficient selection of undirected graphical models for high-dimensional datasets
- GrapheR
- A Multi-Platform GUI for Drawing Customizable Graphs in R
- GraphFactor
- Network Topology of Intravariable Clusters with Intervariable Links
- graphicalVAR
- Graphical VAR for Experience Sampling Data
- graphicsQC
- Quality Control for Graphics in R
- graphicsQC
- Quality Control for Graphics in R
- graphite
- GRAPH Interaction from pathway Topological Environment
- GraphPAC
- Identification of Mutational Clusters in Proteins via a Graph Theoretical Approach.
- graphql
- A GraphQL Query Parser
- graphscan
- Cluster Detection with Hypothesis Free Scan Statistic
- graphTweets
- Visualise Twitter Interactions
- GrassmannOptim
- Grassmann Manifold Optimization
- graticule
- Meridional and Parallel Lines for Maps
- gRaviopt
- What the package does (short line)
- gravy
- Gradient Analysis of Vegetation
- gRbase
- A Package for Graphical Modelling in R
- gRbase
- A package for graphical modelling in R
- gRc
- Inference in Graphical Gaussian Models with Edge and Vertex Symmetries
- gRc
- Inference in Graphical Gaussian Models with Edge and Vertex Symmetries
- gRchain
- Fitting Chain Graph Models
- greenbrown
- Land Surface Phenology and Trend Analysis
- Greg
- Regression Helper Functions
- gregmisc
- Greg's Miscellaneous Functions
- GRENITS
- Gene Regulatory Network Inference Using Time Series
- greport
- Graphical Reporting for Clinical Trials
- grex
- Gene ID Mapping for Genotype-Tissue Expression (GTEx) Data
- GreyListChIP
- Grey Lists -- Mask Artefact Regions Based on ChIP Inputs
- greyzoneSurv
- Fit a Grey-Zone Model with Survival Data
- Grho
- Grho parameters for asymptotic regression
- Grid2Polygons
- Convert Spatial Grids to Polygons
- gridBase
- Integration of base and grid graphics
- gridDebug
- Debugging 'grid' Graphics
- gridDebug
- Debugging 'grid' Graphics
- gridExtra
- Miscellaneous Functions for "Grid" Graphics
- gridExtra
- functions in Grid graphics
- gridgame
- A game framework for R
- gridGraphics
- Redraw Base Graphics Using 'grid' Graphics
- gridGraphviz
- Drawing Graphs with 'grid'
- gridGraphviz
- Drawing Graphs with 'grid'
- gridsample
- Tools for Grid-Based Survey Sampling Design
- gridsampler
- A Simulation Tool to Determine the Required Sample Size for Repertory Grid Studies
- gridSVG
- Export 'grid' Graphics as SVG
- gridSVG
- Export 'grid' Graphics as SVG
- GriegSmith
- Uses Grieg-Smith method on 2 dimentional spatial data
- gRim
- Graphical Interaction Models
- grImport
- Importing Vector Graphics
- grImport
- Importing Vector Graphics
- GRmetrics
- Calculate growth-rate inhibition (GR) metrics
- grndata
- Synthetic Expression Data for Gene Regulatory Network Inference
- grnn
- General regression neural network
- groc
- Generalized Regression on Orthogonal Components
- grofit
- The package was developed to fit fit many growth curves obtained under different conditions.
- groHMM
- GRO-seq Analysis Pipeline
- gromovlab
- Gromov-Hausdorff Type Distances for Labeled Metric Spaces
- grouped
- Regression Analysis of Grouped and Coarse Data
- groupRemMap
- Regularized Multivariate Regression for Identifying Master Predictors Using the GroupRemMap Penalty
- GroupSeq
- A GUI-Based Program to Compute Probabilities Regarding Group Sequential Designs
- GroupTest
- Multiple Testing Procedure for Grouped Hypotheses
- growcurves
- Bayesian Semi and Nonparametric Growth Curve Models that Additionally Include Multiple Membership Random Effects
- growfunctions
- Bayesian Non-Parametric Dependent Models for Time-Indexed Functional Data
- growthcurver
- Simple Metrics to Summarize Growth Curves
- growthmodels
- Nonlinear Growth Models
- growthrate
- Bayesian reconstruction of growth velocity
- growthrates
- Estimate Growth Rates from Experimental Data
- grplasso
- Fitting user specified models with Group Lasso penalty
- grppenalty
- Concave 1-norm and 2-norm group penalty in linear and logistic regression
- grpreg
- Regularization Paths for Regression Models with Grouped Covariates
- grpregOverlap
- Penalized Regression Models with Overlapping Grouped Covariates
- grpSLOPE
- Group Sorted L1 Penalized Estimation
- grpss
- Group Screening and Selection
- grr
- Alternative Implementations of Base R Functions
- GRS.test
- GRS Test for Portfolio Efficiency and Its Statistical Power Analysis
- grt
- General Recognition Theory
- GRTo
- Tools for the Analysis of Gutenberg-Richter Distributions of Earthquake Magnitudes
- GRTS
- Spatially balanced sampling based on GRTS
- GSA
- Gene set analysis
- GSAgm
- Gene Set Analysis using the Gamma Method
- gsalib
- Utility Functions For GATK
- GSALightning
- Fast Permutation-based Gene Set Analysis
- GSAQ
- Gene Set Analysis with QTL
- GSAR
- Gene Set Analysis in R
- gsarima
- Two functions for Generalized SARIMA time series simulation
- gsbDesign
- Group Sequential Bayes Design
- GSCA
- GSCA: Gene Set Context Analysis
- gsDesign
- Group Sequential Design
- gsDesign
- Group Sequential Design
- GSE
- Robust Estimation in the Presence of Cellwise and Casewise Contamination and Missing Data
- GSEABase
- Gene set enrichment data structures and methods
- GSEAlm
- Linear Model Toolset for Gene Set Enrichment Analysis
- GSEArot
- GSEA rotation
- gsEasy
- Gene Set Enrichment Analysis in R
- GSED
- Group Sequential Enrichment Design
- gSeg
- Graph-Based Change-Point Detection (g-Segmentation)
- gSEM
- Semi-Supervised Generalized Structural Equation Modeling
- gset
- Group Sequential Design in Equivalence Studies
- gsg
- Calculation of selection coefficients
- gsheet
- Download Google Sheets Using Just the URL
- GSIF
- Global Soil Information Facilities
- GSIF
- Global Soil Information Facilities
- gskat
- GEE_KM
- gsl
- wrapper for the Gnu Scientific Library
- gslcca
- Generalized Semi-Linear Canonical Correlation Analysis
- GSM
- Gamma Shape Mixture
- gsmoothr
- Smoothing tools
- gsmoothr
- Smoothing tools
- GSMX
- Multivariate Genomic Selection
- gsod
- obtain daily weather data
- GSODR
- Download, Clean and Generate New Variables from GSOD Data
- gsrc
- Genome Structure Rearrangement Calling in Genomes with High Synteny
- GSReg
- Gene Set Regulation (GS-Reg)
- GSRI
- Gene Set Regulation Index
- gss
- General Smoothing Splines
- gsscopu
- Copula Density and 2-D Hazard Estimation using Smoothing Splines
- GSSE
- Genotype-Specific Survival Estimation
- gstat
- Spatial and Spatio-Temporal Geostatistical Modelling, Prediction and Simulation
- gstat
- Spatial and Spatio-Temporal Geostatistical Modelling, Prediction and Simulation
- gsubfn
- Utilities for strings and function arguments.
- GSVA
- Gene Set Variation Analysis for microarray and RNA-seq data
- gsw
- Gibbs Sea Water Functions
- gsymbols
- Grid-based symbols
- GsymPoint
- Estimation of the Generalized Symmetry Point, an Optimal Cutpoint in Continuous Diagnostic Tests
- gtable
- Arrange 'Grobs' in Tables
- gtcorr
- Calculate efficiencies of group testing algorithms with correlated responses
- gte
- Generalized Turnbull's Estimator
- gTests
- Graph-Based Two-Sample Tests
- gtheory
- Apply Generalizability Theory with R
- gtools
- Various R Programming Tools
- gtop
- Game-Theoretically OPtimal (GTOP) Reconciliation Method
- gtrellis
- Genome Level Trellis Layout
- gtrendsR
- Perform and Display Google Trends Queries
- gtx
- Genetics ToolboX
- GuardianR
- The Guardian API Wrapper
- Guerry
- Maps, data and methods related to Guerry (1833) "Moral Statistics of France"
- Guerry
- Maps, data and methods related to Guerry (1833) "Moral Statistics of France"
- guess
- Adjust Estimates of Learning for Guessing
- GUIDE
- GUI for DErivatives in R
- GUIDEseq
- GUIDE-seq analysis pipeline
- GUILDS
- Implementation of Sampling Formulas for the Unified Neutral Model of Biodiversity and Biogeography, with or without Guild Structure
- GUIProfiler
- Graphical User Interface for Rprof()
- Guitar
- Guitar
- gumbel
- The Gumbel-Hougaard Copula
- GUniFrac
- Generalized UniFrac distances
- gunsales
- Statistical Analysis of Monthly Background Checks of Gun Purchases
- gutenbergr
- Download and Process Public Domain Works from Project Gutenberg
- GUTS
- Fast Calculation of the Likelihood of a Stochastic Survival Model
- GUTS
- Fast Calculation of the Likelihood of a Stochastic Survival Model
- GVAR
- Vector Error Correction Model (VECM), VECM with exogenous I(1) variables, Global VAR (GVAR)
- gvc
- Global Value Chains Tools
- gvcm.cat
- Regularized Categorical Effects/Categorical Effect Modifiers/Continuous/Smooth Effects in GLMs
- Gviz
- Plotting data and annotation information along genomic coordinates
- gvlma
- Global Validation of Linear Models Assumptions
- GWAF
- Genome-Wide Association/Interaction Analysis and Rare Variant Analysis with Family Data
- gwascat
- representing and modeling data in the EMBL-EBI GWAS catalog
- GWASExactHW
- Exact Hardy-Weinburg testing for Genome Wide Association Studies
- GWASTools
- Tools for Genome Wide Association Studies
- GWAtoolbox
- GWAS Quality Control
- gwdegree
- A Shiny App to Aid Interpretation of Geometrically-Weighted Degree Estimates in Exponential Random Graph Models
- gwerAM
- Controlling the genome-wide type I error rate in association mapping experiments
- gwfa
- Geographically Weighted Fractal Analysis
- GWG
- Calculation of probabilities for inadequate and excessive gestational weight gain
- gWidgets
- gWidgets API for building toolkit-independent, interactive GUIs
- gWidgets
- gWidgets API for building toolkit-independent, interactive GUIs
- gWidgets2
- Rewrite of gWidgets API for Simplified GUI Construction
- gWidgets2RGtk2
- Implementation of gWidgets2 for the RGtk2 Package
- gWidgets2tcltk
- Toolkit Implementation of gWidgets2 for tcltk
- gWidgetsManipulate
- port of RStudio's manipulate package using gWidgets
- gWidgetsRGtk2
- Toolkit implementation of gWidgets for RGtk2
- gWidgetsrJava
- Toolkit implementation of gWidgets for rJava
- gWidgetstcltk
- Toolkit implementation of gWidgets for tcltk package
- gWidgetstcltk
- Toolkit implementation of gWidgets for tcltk package
- gWidgetsWWW
- Toolkit implementation of the gWidgets API for use with web pages
- gWidgetsWWW2
- Toolkit implementation of the gWidgets API for use with web pages
- GWLelast
- Geographically Weighted Logistic Elastic Net Regression
- GWmodel
- Geographically-Weighted Models
- gWQS
- Generalized Weighted Quantile Sum Regression
- GWRM
- Generalized Waring Regression Model for Count Data
- gwrr
- Fits geographically weighted regression models with diagnostic tools
- GWsignif
- Estimating Genome-Wide Significance for Whole Genome Sequencing Studies, Either Single SNP Tests or Region-Based Tests
- GxM
- Maximum Likelihood Estimation for Gene-by-Measured Environment Interaction Models
- gym
- Provides Access to the OpenAI Gym API
- gyriq
- Kinship-Adjusted Survival SNP-Set Analysis
- h2o
- R Interface for H2O
- h5
- Interface to the 'HDF5' Library
- h5vc
- Managing alignment tallies using a hdf5 backend
- haarfisz
- Software to perform Haar Fisz transforms
- HaarSeg
- HaarSeg
- HAC
- Estimation, Simulation and Visualization of Hierarchical Archimedean Copulae (HAC)
- HadoopStreaming
- Utilities for using R scripts in Hadoop streaming
- HadoopStreaming
- Utilities for using R scripts in Hadoop streaming
- hafroAssmt
- Hafro Assessment Toolbox
- hail
- Read HYDRA Rainfall Data
- hamlet
- Hierarchical Optimal Matching and Machine Learning Toolbox
- HandTill2001
- Multiple Class Area under ROC Curve
- Hankel
- Univariate non-parametric two-sample test based on empirical Hankel transforms.
- hansard
- Provides Easy Downloading Capabilities for the UK Parliament API
- hapassoc
- Inference of Trait Associations with SNP Haplotypes and Other Attributes using the EM Algorithm
- HapEstXXR
- Multi-Locus Stepwise Regression
- hapFabia
- hapFabia: Identification of very short segments of identity by descent (IBD) characterized by rare variants in large sequencing data
- HAPim
- HapIM
- Haplin
- Analyzing Case-Parent Triad and/or Case-Control Data with SNP Haplotypes
- haplo.ccs
- Estimate Haplotype Relative Risks in Case-Control Data
- haploReconstruct
- Reconstruction of Haplotype-Blocks from Time Series Data
- HaploSim
- Functions to simulate haplotypes
- haplo.stats
- Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous
- HaploSurvival
- Modelling of haplo-effects for survival data, including competing risks. Effect of haplomatch for BMT studies.
- haplotyper
- Tool for Clustering Genotypes in Haplotypes
- haplotypes
- Haplotype Inference and Statistical Analysis of Genetic Variation
- HAP.ROR
- Recursive Organizer (ROR)
- HardyWeinberg
- Statistical Tests and Graphics for Hardy-Weinberg Equilibrium
- Harman
- The removal of batch effects from datasets using a PCA and constrained optimisation based technique
- HarmonicRegression
- Harmonic Regression to One or more Time Series
- Harshlight
- A "corrective make-up" program for microarray chips
- HARtools
- Read HTTP Archive ('HAR') Data
- harvestr
- A Parallel Simulation Framework
- Harvest.Tree
- Harvest the Classification Tree
- hash
- Full feature implementation of hash/associated arrays/dictionaries
- hashFunction
- A collection of non-cryptographic hash functions
- hashids
- Generate Short Unique YouTube-Like IDs (Hashes) from Integers
- hashmap
- The Faster Hash Map
- hashr
- Hash R Objects to Integers Fast
- hasseDiagram
- Drawing Hasse diagram
- haven
- Import and Export 'SPSS', 'Stata' and 'SAS' Files
- hawkes
- Hawkes process simulation and calibration toolkit
- hawkes
- Hawkes process simulation and calibration toolkit
- Hawkes
- Hawkes
- hazus
- Damage functions from FEMA's HAZUS software for use in modeling financial losses from natural disasters
- hBayesDM
- Hierarchical Bayesian Modeling of Decision-Making Tasks
- HBglm
- Hierarchical Bayesian Regression for GLMs
- hbiclust
- Hierarchical Biclustering
- hbim
- Hill/Bliss Independence Model for Combination Vaccines
- hbm
- Hierarchical Block Matrix Analysis
- hbmem
- Hierarchical Bayesian Analysis of Recognition Memory
- hbsae
- Hierarchical Bayesian Small Area Estimation
- HBSTM
- Hierarchical Bayesian Space-Time models for Gaussian space-time data.
- hcc
- Hidden correlation check
- hcci
- Interval estimation for the parameters of linear models with heteroskedasticity (Wild Bootstrap)
- HCgglasso
- Group-Lasso with Hierarchical Clustering
- hcp
- Change Point Estimation for Regression with Heteroscedastic Data
- HCsnip
- Semi-supervised adaptive-height snipping of the Hierarchical Clustering tree
- hda
- Heteroscedastic Discriminant Analysis
- HDclassif
- High Dimensional Supervised Classification and Clustering
- HDDesign
- Sample Size Calculation for High Dimensional Classification Study
- hddplot
- Use Known Groups in High-Dimensional Data to Derive Scores for Plots
- hddtools
- Hydrological Data Discovery Tools
- hdeco
- Hierarchical DECOmposition of Entropy for Categorical Map Comparisons
- HDF5Array
- An array-like container for convenient access and manipulation of HDF5 datasets
- HDGLM
- Tests for High Dimensional Generalized Linear Models
- hdi
- High-Dimensional Inference
- hdi
- High-Dimensional Inference
- HDInterval
- Highest (Posterior) Density Intervals
- hdlm
- Fitting High Dimensional Linear Models
- hdlm
- Fitting High Dimensional Linear Models
- hdm
- High-Dimensional Metrics
- hdm
- High-Dimensional Metrics
- HDMD
- Statistical Analysis Tools for High Dimension Molecular Data (HDMD)
- hdnom
- Nomograms for High-Dimensional Cox Models
- HDoutliers
- Leland Wilkinson's Algorithm for Detecting Multidimensional Outliers
- hdpca
- Principal Component Analysis in High-Dimensional Data
- HDPenReg
- High-Dimensional Penalized Regression
- HDPenReg
- High-Dimensional Penalized Regression
- hdr
- Interface to the UNDR Human Development Report API
- HDR
- Processing of hyperspectral reflectance data
- hdrcde
- Highest density regions and conditional density estimation
- HDTD
- Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Transposable Data (HDTD)
- HDtweedie
- The Lasso for the Tweedie's Compound Poisson Model Using an IRLS-BMD Algorithm
- HEAT
- Health Effects of Air Pollution and Temperature (HEAT)
- heatex
- Heat exchange calculations during physical activity.
- heatmap3
- An Improved Heatmap Package
- heatmapFit
- Fit Statistic for Binary Dependent Variable Models
- heatmaply
- Interactive Heat Maps Using 'plotly'
- heatmap.plus
- Heatmap with more sensible behavior.
- Heatplus
- Heatmaps with row and/or column covariates and colored clusters
- heavy
- Robust Estimation Using Heavy-Tailed Distributions
- heemod
- Models for Health Economic Evaluation
- hellno
- Providing 'stringsAsFactors=FALSE' Variants of 'data.frame()' and 'as.data.frame()'
- helloJavaWorld
- Hello Java World
- helloJavaWorld
- Hello Java World
- HelloRanges
- Introduce *Ranges to bedtools users
- HELP
- Tools for HELP data analysis
- HelpersMG
- Tools for Earth Meteorological Analysis
- helsinki
- R Tools for Helsinki Open Data
- HEM
- Heterogeneous error model for identification of differentially expressed genes under multiple conditions
- hepi
- Functions for estimating hedonic elementary price indices
- heplots
- Visualizing Hypothesis Tests in Multivariate Linear Models
- heplots
- Visualizing Hypothesis Tests in Multivariate Linear Models
- herblabel
- Making Labels for Herbarium Specimens in RTF and More
- hergm
- Hierarchical Exponential-Family Random Graph Models
- heritability
- Marker-Based Estimation of Heritability Using Individual Plant or Plot Data
- hermite
- Generalized Hermite Distribution
- hetmeta
- Heterogeneity Measures in Meta-Analysis
- hett
- Heteroscedastic t-regression
- het.test
- White's Test for Heteroskedasticity
- heuristica
- Heuristics Including Take the Best and Unit-Weight Linear
- hexbin
- Hexagonal Binning Routines
- hextri
- Hexbin Plots with Triangles
- hexView
- Viewing Binary Files
- hflights
- Flights that departed Houston in 2011
- hgam
- High-dimensional Additive Modelling
- hgam
- High-dimensional Additive Modelling
- hglasso
- Learning graphical models with hubs
- hglm
- Hierarchical Generalized Linear Models
- hglm
- Hierarchical Generalized Linear Models
- hglm.data
- Data for The hglm Package
- hglm.data
- Data for The hglm Package
- hgm
- Holonomic Gradient Method and Gradient Descent
- HGNChelper
- Handy Functions for Working With HGNC Gene Symbols and Affymetrix Probeset Identifiers.
- HH
- Statistical Analysis and Data Display: Heiberger and Holland
- HHG
- Heller-Heller-Gorfine Tests of Independence and Equality of Distributions
- hht
- The Hilbert-Huang Transform: Tools and Methods
- HI
- Simulation from distributions supported by nested hyperplanes
- hiAnnotator
- Functions for annotating GRanges objects
- HIBAG
- HLA Genotype Imputation with Attribute Bagging
- HIBAG
- HIBAG -- HLA Genotype Imputation with Attribute Bagging
- HIBPwned
- Bindings for the 'HaveIBeenPwned.com' Data Breach API
- HiCfeat
- Multiple Logistic Regression for 3D Chromatin Domain Border Analysis
- HiCglmi
- Probing Factor-Dependent Long-Range Contacts using Regression with Higher-Order Interaction Terms
- HiClimR
- Hierarchical Climate Regionalization
- HiCseg
- Detection of domains in HiC data
- hiddenf
- The All-Configurations, Maximum-Interaction F-Test for Hidden Additivity
- HiddenMarkov
- Hidden Markov Models
- HiDimDA
- High Dimensional Discriminant Analysis
- HiDimMaxStable
- Inference on High Dimensional Max-Stable Distributions
- hierarchicalDS
- Functions For Performing Hierarchical Analysis of Distance Sampling Data
- hierarchicalSets
- Set Data Visualization Using Hierarchies
- hierband
- Convex Banding of the Covariance Matrix
- hierDiversity
- Hierarchical Multiplicative Partitioning of Complex Phenotypes
- hierformR
- Analysis of Dynamics Hierarchy Formation
- hierfstat
- Estimation and Tests of Hierarchical F-Statistics
- hierGWAS
- Asessing statistical significance in predictive GWA studies
- hierNet
- A Lasso for Hierarchical Interactions
- HierO
- A graphical user interface for calculating power and sample size for hierarchical data
- hier.part
- Hierarchical Partitioning
- hiertest
- Convex Hierarchical Testing of Interactions
- HIest
- Hybrid index estimation
- highcharter
- A Wrapper for the 'Highcharts' Library
- highD2pop
- Two-Sample Tests for Equality of Means in High Dimension
- HighDimOut
- Outlier Detection Algorithms for High-Dimensional Data
- highfrequency
- Tools For Highfrequency Data Analysis
- highfrequency
- Tools for Highfrequency Data Analysis
- highlight
- Syntax Highlighter
- highlight
- Syntax highlighter
- highmean
- Two-Sample Tests for High-Dimensional Mean Vectors
- highr
- Syntax Highlighting for R Source Code
- highriskzone
- Determining and Evaluating High-Risk Zones
- highriskzone
- Determining and Evaluating High-Risk Zones
- highSCREEN
- High Throughput Screening for Plate Based Essays
- highTtest
- Simultaneous Critical Values for t-Tests in Very High Dimensions
- HilbertCurve
- Making 2D Hilbert Curve
- HilbertVis
- Hilbert curve visualization
- HilbertVisGUI
- HilbertVisGUI
- hillmakeR
- Perform occupancy analysis
- HiLMM
- Estimation of Heritability in Linear Mixed Models
- hindexcalculator
- H-Index Calculator using Data from a Web of Science (WoS) Citation Report
- hint
- Tools for hypothesis testing based on Hypergeometric Intersection distributions
- HiPLARM
- High Performance Linear Algebra in R
- hiPOD
- hierarchical Pooled Optimal Design
- hiReadsProcessor
- Functions to process LM-PCR reads from 454/Illumina data
- hisemi
- Hierarchical Semiparametric Regression of Test Statistics
- hisemi
- Hierarchical Semiparametric Regression of Test Statistics
- hisse
- Hidden State Speciation and Extinction
- HistData
- Data Sets from the History of Statistics and Data Visualization
- HistData
- Data Sets from the History of Statistics and Data Visualization
- HistDAWass
- Histogram-Valued Data Analysis
- histmdl
- A Most Informative Histogram-Like Model
- histogram
- Construction of Regular and Irregular Histograms with Different Options for Automatic Choice of Bins
- HistogramTools
- Utility Functions for R Histograms
- HistogramTools
- Utility Functions for R Histograms
- historydata
- Data Sets for Historians
- hit
- Hierarchical Inference Testing
- hitandrun
- "Hit and Run" and "Shake and Bake" for Sampling Uniformly from Convex Shapes
- HiTC
- High Throughput Chromosome Conformation Capture analysis
- HITXML
- Planning tools for ion beam therapy
- hive
- Hadoop InteractiVE
- hive
- Hadoop InteractiVE
- HiveR
- 2D and 3D Hive Plots for R
- HIV.LifeTables
- HIV calibrated model life tables for countries with generalized HIV epidemics
- HK80
- Conversion Tools for HK80 Geographical Coordinate System
- hkclustering
- Ensemble Clustering using K Means and Hierarchical Clustering
- hkevp
- Spatial Extreme Value Analysis with the Hierarchical Model of Reich and Shaby (2012)
- hkex.api
- API to Retrieve Data from Hong Kong Stock Exchange
- HKprocess
- Hurst-Kolmogorov Process
- h.likelihood
- Statistical Modeling and Inference via Hierarchical Likelihood
- HLMdiag
- Diagnostic Tools for Hierarchical (Multilevel) Linear Models
- HLSM
- Hierarchical Latent Space Network Model
- HMDHFDplus
- Read HMD and HFD Data from the Web
- hmeasure
- The H-measure and other scalar classification performance metrics
- Hmisc
- Harrell Miscellaneous
- HMM
- HMM - Hidden Markov Models
- HMMCont
- Hidden Markov Model for Continuous Observations Processes
- HMMcopy
- Copy number prediction with correction for GC and mappability bias for HTS data
- hmm.discnp
- Hidden Markov Models with Discrete Non-Parametric Observation Distributions
- hmmm
- hierarchical multinomial marginal models
- HMMpa
- Analysing accelerometer data using hidden Markov models
- hmmr
- Data and examples package accompanying the book 'HMMs with R'
- HMP
- Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP
- HMPTrees
- Statistical Object Oriented Data Analysis of RDP-Based Taxonomic Trees from Human Microbiome Data
- HMR
- Flux Estimation with Static Chamber Data
- hms
- Pretty Time of Day
- HMSC
- Hierarchical modelling of species community
- HMVD
- Group Association Test using a Hidden Markov Model
- hnp
- Half-Normal Plots with Simulation Envelopes
- hoa
- Higher Order Likelihood Inference
- hoardeR
- Collect and Retrieve Annotation Data for Various Genomic Data Using Different Webservices
- holdem
- Texas Holdem simulator
- Holidays
- Holiday and Half-Day Data, for Use with the 'TimeWarp' Package
- Holidays
- Holiday and Half-Day Data, for Use with the 'TimeWarp' Package
- homals
- Gifi Methods for Optimal Scaling
- homeR
- Useful Functions for Building Physics
- Homeric
- Doughnut Plots
- homomorpheR
- Homomorphic Computations in R
- HomoPolymer
- Theoretical Model to Simulate Radical Polymerization
- homtest
- Homogeneity tests for Regional Frequency Analysis
- hopach
- Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)
- hopbyhop
- Transmissions and Receptions in a Hop by Hop Network
- horizon
- Horizon Search Algorithm
- hornpa
- Horn's (1965) Test to Determine the Number of Components/Factors
- horseshoe
- Implementation of the Horseshoe Prior
- hot.deck
- Multiple Hot-Deck Imputation
- HotDeckImputation
- Hot Deck Imputation Methods for Missing Data
- Hotelling
- Hotelling's T-squared test and variants
- hotspot
- Software Hotspot Analysis
- hotspots
- Hot spots
- housingData
- U.S. Housing Data from 2008 to 2016
- howmany
- A lower bound for the number of correct rejections
- hpar
- Human Protein Atlas in R
- HPbayes
- Heligman Pollard mortality model parameter estimation using Bayesian Melding with Incremental Mixture Importance Sampling
- hpcwld
- High Performance Cluster Models Based on Kiefer-Wolfowitz Recursion
- hpcwld
- High Performance Cluster Models Based on Kiefer-Wolfowitz Recursion
- hpoPlot
- Functions for Plotting HPO Terms
- hqmisc
- Miscellaneous convenience functions and dataset
- hqreg
- Regularization Paths for Lasso or Elastic-Net Penalized Huber Loss Regression and Quantile Regression
- HRM
- High-Dimensional Repeated Measures
- hrr
- Horizontal rule for the R language.
- HSAR
- Hierarchical Spatial Autoregressive Model (HSAR)
- HSAUR
- A Handbook of Statistical Analyses Using R (1st Edition)
- HSAUR2
- A Handbook of Statistical Analyses Using R (2nd Edition)
- HSAUR3
- A Handbook of Statistical Analyses Using R (3rd Edition)
- hsdar
- Manage, Analyse and Simulate Hyperspectral Data
- hSDM
- hierarchical Bayesian species distribution models
- hsicCCA
- Canonical Correlation Analysis based on Kernel Independence Measures
- hsm
- A Path-Based BCD for Proximal Function of Latent Group Lasso
- hsmm
- Hidden Semi Markov Models
- hsphase
- Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data
- HSROC
- Meta-Analysis of Diagnostic Test Accuracy when Reference Test is Imperfect
- HSSVD
- Biclustering with Heterogeneous Variance
- HTDA
- HTDA (High Throughput Data Analysis)
- htdp
- Horizontal Time Dependent Positioning
- htmltab
- Assemble Data Frames from HTML Tables
- htmlTable
- Advanced Tables for Markdown/HTML
- htmltidy
- Tidy Up and Test XPath Queries on HTML and XML Content
- htmltools
- R Tools for Producing HTML (Base64 Coding and R Interface to the tth/ttm TeX to HTML Translator)
- htmltools
- Tools for HTML
- HTMLUtils
- Facilitates Automated HTML Report Creation
- htmlwidgets
- HTML Widgets for R
- HTqPCR
- Automated analysis of high-throughput qPCR data
- hts
- Hierarchical and Grouped Time Series
- HTSanalyzeR
- Gene set over-representation, enrichment and network analyses for high-throughput screens
- HTSCluster
- Clustering High-Throughput Transcriptome Sequencing (HTS) Data
- HTSCluster
- Clustering High-Throughput Transcriptome Sequencing (HTS) Data
- HTSDiff
- Differential Analysis of RNA-Seq Data with Poisson Mixture Models
- HTSeqGenie
- A NGS analysis pipeline.
- htSeqTools
- Quality Control, Visualization and Processing for High-Throughput Sequencing data
- HTSFilter
- Filter replicated high-throughput transcriptome sequencing data
- HTSSIP
- High Throughput Sequencing of Stable Isotope Probing Data Analysis
- httk
- High-Throughput Toxicokinetics
- httpcache
- Query Cache for HTTP Clients
- httpcode
- 'HTTP' Status Code Helper
- httping
- 'Ping' 'URLs' to Time 'Requests'
- httpRequest
- Basic HTTP Request
- httpuv
- HTTP and WebSocket Server Library
- httr
- Tools for Working with URLs and HTTP
- hubbell
- Functions for Hubbell's Grand Unified Theory
- huge
- High-Dimensional Undirected Graph Estimation
- HUM
- compute HUM value and visualize ROC curves
- humanFormat
- Human-friendly formatting functions
- humaniformat
- A Parser for Human Names
- humarray
- Simplify Analysis and Annotation of Human Microarray Datasets
- humidity
- An R Package for Calculating Water Vapor Measures from Temperature and Relative Humidity
- hunspell
- High-Performance Stemmer, Tokenizer, and Spell Checker for R
- hwde
- Models and Tests for Departure from Hardy-Weinberg Equilibrium and Independence Between Loci
- HWEBayes
- Bayesian investigation of Hardy-Weinberg Equilibrium via estimation and testing.
- HWEintrinsic
- Objective Bayesian Testing for the Hardy-Weinberg Equilibrium Problem
- HW.pval
- Testing Hardy-Weinberg Equilibrium for Multiallelic Genes
- hwriter
- HTML Writer - Outputs R objects in HTML format
- hwriter5
- hwriter5: Writing HTML5 from R
- hwriterPlus
- hwriterPlus: Extending the hwriter Package
- hwwntest
- Tests of White Noise using Wavelets
- HWxtest
- Exact Tests for Hardy-Weinberg Proportions
- hybridEnsemble
- Build, Deploy and Evaluate Hybrid Ensembles
- hybridHclust
- Hybrid Hierarchical Clustering
- HybridMC
- Implementation of the Hybrid Monte Carlo and Multipoint Hybrid Monte Carlo sampling techniques
- HybridMC
- Implementation of the Hybrid Monte Carlo and Multipoint Hybrid Monte Carlo sampling techniques
- hybridModels
- Stochastic Hybrid Models in Dynamic Networks
- HybridMTest
- Hybrid Multiple Testing
- HydeNet
- Hybrid Bayesian Networks Using R and JAGS
- hydroApps
- Tools and models for hydrological applications
- hydroEFS
- Hydrological Event Finding and Summarising (hydroEFS).
- hydrogeo
- Groundwater Data Presentation and Interpretation
- hydroGOF
- Goodness-of-fit functions for comparison of simulated and observed hydrological time series
- HydroMe
- R codes for estimating water retention and infiltration model parameters using experimental data
- hydroMet
- Meteorological Data for Hydrological Modeling
- hydroPSO
- Particle Swarm Optimisation, with focus on Environmental Models
- hydrostats
- Hydrologic Indices for Daily Time Series Data
- hydroTSM
- Time series management, analysis and interpolation for hydrological modelling
- hyfo
- Hydrology and Climate Forecasting
- HyperbolicDist
- The hyperbolic distribution
- HyperbolicDist
- The hyperbolic distribution
- hyperdirichlet
- A generalization of the Dirichlet distribution
- hyperdraw
- Visualizing Hypergaphs
- hyper.fit
- Generic N-Dimensional Hyperplane Fitting with Heteroscedastic Covariant Errors and Intrinsic Scatter
- hypergea
- Hypergeometric Tests
- hypergeo
- The Gauss Hypergeometric Function
- hypergraph
- A package providing hypergraph data structures
- hypergsplines
- Bayesian model selection with penalised splines and hyper-g prior
- hyperSMURF
- Hyper-Ensemble Smote Undersampled Random Forests
- hyperSpec
- Work with Hyperspectral Data, i.e. Spectra + Meta Information (Spatial, Time, Concentration, ...)
- hyperSpec
- Work with Hyperspectral Data, i.e. Spectra + Meta Information (Spatial, Time, Concentration, ...)
- hyperSpecGUI
- Graphical interface for hyperSpec package, includes interactive plots
- hypervolume
- High-Dimensional Kernel Density Estimation and Geometry Operations
- hyphenatr
- Tools to Hyphenate Strings Using the 'Hunspell' Hyphenation Library
- HyPhy
- Macroevolutionary phylogentic analysis of species trees and gene trees
- hypoparsr
- Multi-Hypothesis CSV Parser
- hypothesestest
- Confidence Intervals and Tests of Statistical Hypotheses
- hypothesisr
- Wrapper for the 'Hypothes.is' Web Annotation Service
- hysteresis
- Tools for Modeling Rate-Dependent Hysteretic Processes and Ellipses
- hzar
- Hybrid Zone Analysis using R
- IalsaSynthesis
- Synthesizing Information Across Collaborating Research
- IAPWS95
- Thermophysical Properties of Water and Steam
- IASD
- Model Selection for Index of Asymmetry Distribution
- iASeq
- iASeq: integrating multiple sequencing datasets for detecting allele-specific events
- IAT
- Cleaning and Visualizing Implicit Association Test (IAT) Data
- IATscores
- Implicit Association Test Scores Using Robust Statistics
- iBATCGH
- Integrative Bayesian Analysis of Transcriptomic and CGH Data
- iBBiG
- Iterative Binary Biclustering of Genesets
- ibd
- INCOMPLETE BLOCK DESIGNS
- IBData
- IB Real-time Data package
- IBDhaploRtools
- Functions for the Analysis of IBD Haplo Output
- IBDhaploRtools
- Functions for the Analysis of IBD Haplo Output.
- IBDlabels
- Convert between different IBD-state labelling schemes
- IBDLabels
- Convert Between Different IBD-State Labelling Schemes
- IBDLabels
- Convert Between Different IBD-State Labelling Schemes.
- ibdreg
- Regression Methods for IBD Linkage With Covariates
- IBDsim
- Simulation of Chromosomal Regions Shared by Family Members
- ibeemd
- Irregular-lattice based ensemble empirical mode decomposition
- ibelief
- Belief Function Implementation
- ibh
- Interaction Based Homogeneity for Evaluating Gene Lists
- IBHM
- Approximation using the IBHM method
- ibm
- Individual Based Models in R
- ibmcraftr
- Toolkits to Develop Individual-Based Models in Infectious Disease
- ibmdbR
- IBM in-Database Analytics for R
- ibmpm
- Individual-based metapopulation model
- iBMQ
- integrated Bayesian Modeling of eQTL data
- Iboot
- Iboot: iterated bootstrap tests and confidence sets.
- ibr
- Iterative Bias Reduction
- IBrokers
- R API to Interactive Brokers Trader Workstation
- iBUGS
- An Interface to WinBUGS/OpenBUGS/JAGS by gWidgets
- iC10
- A Copy Number and Expression-Based Classifier for Breast Tumours
- iC10TrainingData
- Training datasets for iC10 package.
- IC2
- Inequality and Concentration Indices and Curves
- ic50
- Standardized high-throughput evaluation of cell-based compound screens
- ica
- Independent Component Analysis
- ica4fts
- ica4fts package
- ICAFF
- Imperialist Competitive Algorithm
- icamix
- Estimation of ICA Mixture Models
- icaOcularCorrection
- Independent Components Analysis (ICA) based artifact correction.
- ICAOD
- Imperialist Competitive Algorithm for Optimal Designs
- icapca
- Mixed ICA/PCA
- iCARE
- A Tool for Individualized Coherent Absolute Risk Estimation (iCARE)
- icarus
- Calibrates and Reweights Units in Samples
- icav
- IC-ac
- ICBayes
- Bayesian Semiparametric Models for Interval-Censored Data
- ICC
- Facilitating Estimation of the Intraclass Correlation Coefficient
- ICC
- Functions facilitating the estimation of the Intraclass Correlation Coefficient
- iccbeta
- Multilevel model intraclass correlation for slope heterogeneity
- ICC.Sample.Size
- Calculation of Sample Size and Power for ICC
- icd
- Tools for Working with ICD-9 and ICD-10 Codes, and Finding Comorbidities
- icd9
- Tools for Working with ICD-9 Codes, and Finding Comorbidities
- icdGLM
- EM by the Method of Weights for Incomplete Categorical Data in Generlized Linear Models
- ICE
- Iterated Conditional Expectation
- ICEbox
- Individual Conditional Expectation Plot Toolbox
- ICEinfer
- Incremental Cost-Effectiveness (ICE) Statistical Inference from Two Unbiased Samples
- icenReg
- Regression Models for Interval Censored Data
- Icens
- NPMLE for Censored and Truncated Data
- icensmis
- Study Design and Data Analysis in the Presence of Error-Prone Diagnostic Tests and Self-Reported Outcomes
- icesAdvice
- Functions Related to ICES Advice
- icesDatras
- DATRAS Trawl Database Web Services
- icesSAG
- Stock Assessment Graphs Database Web Services
- icesVocab
- ICES Vocabularies Database Web Services
- ICGE
- Estimation of number of clusters and identification of atypical units
- ICGOR
- Fit Generalized Odds Rate Hazards Model with Interval Censored Data
- iCheck
- QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data
- iChip
- Bayesian Modeling of ChIP-chip Data Through Hidden Ising Models
- ic.infer
- Inequality constrained inference in linear normal situations
- iClick
- A Button-Based GUI for Financial and Economic Data Analysis
- iCluster
- Integrative clustering of multiple genomic data types
- iClusterPlus
- Integrative clustering of multi-type genomic data
- iCOBRA
- Comparison and Visualization of Ranking and Assignment Methods
- icpsrdata
- Reproducible Data Retrieval from the ICPSR Archive
- icpsrmsda
- Optimal Linearizing Transformations for Multivariate Data
- icRSF
- A Modified Random Survival Forest Algorithm
- ICS
- Tools for Exploring Multivariate Data via ICS/ICA
- ICSNP
- Tools for Multivariate Nonparametrics
- ICsurv
- A package for semiparametric regression analysis of interval-censored data
- icsw
- Inverse Compliance Score Weighting
- idbg
- R debugger
- idbg
- R debugger
- idbr
- R Interface to the US Census Bureau International Data Base API
- idem
- Inference in Randomized Controlled Trials with Death and Missingness
- idendr0
- Interactive Dendrograms
- identity
- Jacquard Condensed Coefficients of Identity
- IdeoViz
- Plots data (continuous/discrete) along chromosomal ideogram
- idiogram
- idiogram
- idm
- Incremental Decomposition Methods
- IdMappingAnalysis
- ID Mapping Analysis
- IdMappingRetrieval
- ID Mapping Data Retrieval
- IDmining
- Intrinsic Dimension for Data Mining
- iDOS
- Integrated Discovery of Oncogenic Signatures
- IDPmisc
- Utilities of Institute of Data Analyses and Process Design (www.idp.zhaw.ch)
- IDPSurvival
- Imprecise Dirichlet Process for Survival Analysis
- idr
- Irreproducible discovery rate
- ids
- Generate Random Identifiers
- IDSpatialStats
- Estimate Global Clustering in Infectious Disease
- IDTurtle
- Identify Turtles by their Plastral Biometries
- iDynoR
- R Analysis package for iDynoMiCS Simulation Results
- ie2misc
- Irucka Embry's Miscellaneous USGS Functions
- ie2miscdata
- Irucka Embry's Miscellaneous USGS Data Collection
- ieeeround
- Functions to set and get the IEEE rounding mode
- iemisc
- Irucka Embry's Miscellaneous Functions
- iemiscdata
- Irucka Embry's Miscellaneous Data Collection
- iemisctext
- Irucka Embry's Miscellaneous Text Collection
- ifa
- Independent Factor Analysis
- iFad
- An integrative factor analysis model for drug-pathway association inference
- ifaTools
- Toolkit for Item Factor Analysis with 'OpenMx'
- ifctools
- Italian fiscal code miscellaneous utilities
- ifctools
- Italian Fiscal Code ('Codice Fiscale') Utilities
- IFP
- Identifying Functional Polymorphisms
- ifrogs
- Finance routines developed by the IGIDR Finance Research Group.
- ifs
- Iterated Function Systems
- ifs
- Iterated Function Systems
- ifultools
- Insightful Research Tools
- ifultools
- Insightful Research Tools
- iGasso
- Statistical Tests and Utilities for Genetic Association
- iGC
- An integrated analysis package of Gene expression and Copy number alteration
- IGIR
- Integrative network Graphic Engine Interface for R
- IGM.MEA
- IGM MEA Analysis
- IgorR
- Read Binary Files Saved by 'Igor Pro' (Including 'Neuromatic' Data)
- igraph
- Network Analysis and Visualization
- igraphdata
- A Collection of Network Data Sets for the 'igraph' Package
- igraphinshiny
- Use 'shiny' to Demo 'igraph'
- igraphtosonia
- Convert iGraph graps to SoNIA .son files
- ig.vancouver.2014.topcolour
- Instagram 2014 Vancouver Top Colour Dataset
- IHA
- This package implements The Nature Conservancy's Indicators of Hydrologic Alteration software in R.
- ihs
- Inverse Hyperbolic Sine Distribution
- IHSEP
- Inhomogeneous Self-Exciting Process
- IHW
- Independent Hypothesis Weighting
- iki.dataclim
- Consistency, Homogeneity and Summary Statistics of Climatological Data
- iLaplace
- Improved Laplace Approximation for Integrals of Unimodal Functions
- ilc
- Lee-Carter Mortality Models using Iterative Fitting Algorithms
- illuminaio
- Parsing Illumina Microarray Output Files
- ILS
- Interlaboratory Study
- IM
- Orthogonal Moment Analysis
- imad
- Iteratively Re-weighted Multivariate Alteration Detection (iMAD)
- imageData
- Aids in Processing and Plotting Data from a Lemna-Tec Scananalyzer
- imageHTS
- Analysis of high-throughput microscopy-based screens
- imagemap
- Create html imagemaps
- imager
- Image Processing Library Based on 'CImg'
- imagine
- Imaging Engine, Tools for Application of Image Filters to Data Matrices
- IMak
- Item Maker
- Imap
- Interactive Mapping
- Imetagene
- A graphical interface for the metagene package
- IMFData
- R Interface for International Monetary Fund(IMF) Data API
- imfr
- Download Data from the International Monetary Fund's Data API
- imguR
- An Imgur.com API Client Package
- imguR
- Share plots using the imgur.com image hosting service
- IMIS
- Increamental Mixture Importance Sampling
- immer
- Item Response Models for Multiple Ratings
- ImmuneSpaceR
- A Thin Wrapper around the ImmuneSpace Database
- immunoassay
- Functions for working with immunoassay data.
- immunoClust
- immunoClust - Automated Pipeline for Population Detection in Flow Cytometry
- IMP
- Interactive Model Performance Evaluation
- imp4p
- Imputation for Proteomics
- IMPACT
- The Impact of Items
- ImpactIV
- Identifying Causal Effect for Multi-Component Intervention Using Instrumental Variable Method
- IMPCdata
- Retrieves data from IMPC database
- imPois
- Imprecise Inferential Framework for Poisson Sampling Model
- import
- An Import Mechanism for R
- ImportExport
- Import and Export Data
- imprProbEst
- Minimum distance estimation in an imprecise probability model
- ImpulseDE
- Detection of DE genes in time series data using impulse models
- impute
- impute: Imputation for microarray data
- imputeLCMD
- A collection of methods for left-censored missing data imputation
- imputeMDR
- The Multifactor Dimensionality Reduction (MDR) Analysis for Incomplete Data
- imputeMissings
- Impute Missing Values in a Predictive Context
- imputeMulti
- Imputation Methods for Multivariate Multinomial Data
- imputePSF
- Impute Missing Data in Time Series Data with PSF Based Method
- imputeTestbench
- Test Bench for the Comparison of Imputation Methods
- imputeTS
- Time Series Missing Value Imputation
- imputeYn
- Imputing the Last Largest Censored Observation(s) Under Weighted Least Squares
- in2extRemes
- Into the extRemes Package
- inarmix
- Mixture models for longitudinal count data.
- INBOtheme
- Themes for ggplot2
- inbreedR
- Analysing Inbreeding Based on Genetic Markers
- inca
- Integer Calibration
- incidence
- Compute, Handle, Plot and Model Incidence of Dated Events
- inctools
- Incidence Estimation Tools
- IncucyteDRC
- Dose Response Curves from Incucyte Proliferation Assays
- indelmiss
- Insertion Deletion Analysis While Accounting for Possible Missing Data
- IndependenceTests
- Nonparametric tests of independence between random vectors.
- indicspecies
- Relationship Between Species and Groups of Sites
- IndTestPP
- Tests of Independence Between Point Processes in Time
- inegiR
- Integrate INEGIâ€™s (Mexican Stats Office) API with R
- ineq
- Measuring Inequality, Concentration, and Poverty
- iNEXT
- Interpolation and Extrapolation for Species Diversity
- InfDim
- Infine-dimensional model (IDM) to analyse phenotypic variation in growth trajectories.
- infeR
- A pedagogical tool to teach the basics of inference in population genetics
- inference
- Functions to extract inferential values of a fitted model object
- inference
- Functions to extract inferential values of a fitted model object
- InferenceSMR
- Inference about the standardized mortality ratio when evaluating the effect of a screening program on survival.
- inferference
- Methods for Causal Inference with Interference
- inflection
- Finds the Inflection Point of a Curve
- influence.ME
- Tools for Detecting Influential Data in Mixed Effects Models
- influenceR
- Software Tools to Quantify Structural Importance of Nodes in a Network
- influence.SEM
- Case Influence in Structural Equation Models
- infoDecompuTE
- Information Decomposition of Two-phase Experiments
- Information
- Data Exploration with Information Theory (Weight-of-Evidence and Information Value)
- InformationValue
- Performance Analysis and Companion Functions for Binary Classification Models
- InformativeCensoring
- Multiple Imputation for Informative Censoring
- informR
- Sequence Statistics for Relational Event Models
- infotheo
- Information-Theoretic Measures
- infra
- An Infrastructure Proxy Function
- infraFDTD.assist
- IO Help for infraFDTD Model
- infuser
- A Very Basic Templating Engine
- Infusion
- Inference Using Simulation
- infutil
- Information Utility
- ini
- Read and Write '.ini' Files
- injectoR
- R Dependency Injection
- INLABMA
- Bayesian Model Averaging with INLA
- INLABMA
- Bayesian Model Averaging with INLA
- inlaDevel
- Development files for INLA
- inline
- Functions to Inline C, C++, Fortran Function Calls from R
- inlinedocs
- Convert inline comments to documentation
- inlinedocs
- Convert inline comments to documentation
- inlmisc
- Miscellaneous Functions for the USGS INL Project Office
- InPAS
- Identification of Novel alternative PolyAdenylation Sites (PAS)
- inpdfr
- Analyse Text Documents Using Ecological Tools
- InPosition
- Inference Tests for ExPosition
- INPower
- An R package for computing the number of susceptibility SNPs
- insideRODE
- insideRODE includes buildin functions with deSolve solver and C/FORTRAN interfaces to nlme, together with compiled codes.
- inSilicoDb
- Access to the InSilico Database
- inSilicoMerging
- Collection of Merging Techniques for Gene Expression Data
- InSilicoVA
- Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm
- insol
- Solar Radiation
- INSPEcT
- Analysis of 4sU-seq and RNA-seq time-course data
- InspectChangepoint
- High-Dimensional Changepoint Estimation via Sparse Projection
- inspectr
- Storing, manipulating and analysis spectroscopy and associated data in R.
- INSPIRE
- Inferring Shared Modules from Multiple Gene Expression Datasets with Partially Overlapping Gene Sets
- install.load
- Check, Install and Load CRAN & USGS GRAN Packages
- installr
- Using R to Install Stuff (Such As: R, 'Rtools', 'RStudio', 'Git', and More!)
- instaR
- Access to Instagram API via R
- insuranceData
- A Collection of Insurance Datasets Useful in Risk Classification in Non-life Insurance.
- int64
- 64 bit integer types
- intamap
- Procedures for Automated Interpolation
- intamapInteractive
- procedures for automated interpolation - methods only to be used interactively, not included in intamap package
- intansv
- Integrative analysis of structural variations
- IntClust
- Integrated Data Analysis via Clustering
- IntClust
- Integrated Data Analysis via Clustering
- integIRTy
- Integrating Multiple Modalities of High Throughput Assays Using Item Response Theory
- IntegrateBs
- Integration for B-Spline
- IntegratedJM
- Joint Modelling of the Gene-Expression and Bioassay Data, Taking Care of the Effect Due to a Fingerprint Feature
- IntegratedJM
- Joint Modelling of the Gene-Expression and Bioassay Data, Taking Care of the Effect Due to a Fingerprint Feature
- IntegratedMRF
- Integrated Prediction using Univariate and Multivariate Random Forests
- Interact
- Tests for marginal interactions in a 2 class response model
- InteractionSet
- Base Classes for Storing Genomic Interaction Data
- interactionTest
- Calculates Critical Test Statistics to Control False Discovery and Familywise Error Rates in Marginal Effects Plots
- interactiveDisplay
- Package for enabling powerful shiny web displays of Bioconductor objects
- interactiveDisplayBase
- Base package for enabling powerful shiny web displays of Bioconductor objects
- InteractiveIGraph
- interactive network analysis and visualization.
- interAdapt
- interAdapt
- Interatrix
- Compute Chi-Square Measures with Corrections
- intercure
- Cure Rate Estimators for Interval Censored Data
- interferenceCI
- Exact Confidence Intervals in the Presence of Interference
- intergraph
- Coercion Routines for Network Data Objects
- intergraph
- Coercion routines for network data objects in R
- internetarchive
- An API Client for the Internet Archive
- interplot
- Plot the Effects of Variables in Interaction Terms
- Interpol
- Interpolation of amino acid sequences
- Interpol.T
- Hourly interpolation of multiple temperature daily series
- InterpretMSSpectrum
- Interpreting High Resolution GC-APCI-MS Spectra
- interpretR
- Binary Classifier and Regression Model Interpretation Functions
- InterSIM
- Simulation of Inter-Related Genomic Datasets
- InterVA4
- Replicate and Analyse 'InterVA4'
- interval
- Weighted Logrank Tests and NPMLE for interval censored data
- intervals
- Tools for Working with Points and Intervals
- intervals
- Tools for working with points and intervals
- interventionalDBN
- Interventional Inference for Dynamic Bayesian Networks
- IntLik
- Numerical Integration for Integrated Likelihood
- IntNMF
- Integrative Clustering of Multiple Genomic Dataset
- intpoint
- linear programming solver by the interior point method and graphically (two dimensions)
- inTrees
- Interpret Tree Ensembles
- intReg
- Interval Regression
- intReg
- Interval Regression
- intRegGOF
- Integrated Regression Goodness of Fit
- IntroCompFinR
- Introduction to Computational Finance in R
- introgress
- methods for analyzing introgression between divergent lineages
- intrval
- Relational Operators for Intervals
- intsvy
- International Assessment Data Manager
- intubate
- Interface to Popular R Functions for Data Science Pipelines
- inum
- Interval and Enum-type Representation of Vectors
- InvariantCausalPrediction
- Invariant Causal Prediction
- InventorymodelPackage
- Inventorymodel
- inveRsion
- Inversions in genotype data
- investr
- Inverse Estimation/Calibration Functions
- invgamma
- The Inverse Gamma Distribution
- invGauss
- Threshold regression that fits the (randomized drift) inverse Gaussian distribution to survival data.
- invLT
- Inversion of Laplace-Transformed Functions
- io
- A Unified Framework for Input-Output Operations in R
- ioncopy
- Calling Copy Number Alterations in Amplicon Sequencing Data
- ionflows
- Calculate the Number of Required Flows for Semiconductor Sequencing
- IONiseR
- Quality Assessment Tools for Oxford Nanopore MinION data
- ionr
- Test for Indifference of Indicator
- iontree
- Data management and analysis of ion trees from ion-trap mass spectrometry
- iopsych
- Methods for Industrial/Organizational Psychology
- iosmooth
- Functions for smoothing with infinite order flat-top kernels
- iotools
- I/O Tools for Streaming
- iPAC
- Identification of Protein Amino acid Clustering
- ipdmeta
- Tools for subgroup analyses with multiple trial data using aggregate statistics
- ipdw
- Spatial Interpolation by Inverse Path Distance Weighting
- ipeds
- Integrated Postsecondary Education Data System (IPEDS) Access
- ipeglim
- Imprecise Inferential Framework on Statistical Reasoning
- ipflasso
- Integrative Lasso with Penalty Factors
- ipfp
- Fast Implementation of the Iterative Proportional Fitting Procedure in C
- iplots
- iPlots - interactive graphics for R
- IPMpack
- Builds and analyses Integral Projection Models (IPMs).
- IPMpack
- Builds and analyses Integral Projection Models (IPMs).
- IPO
- Automated Optimization of XCMS Data Processing parameters
- IPPD
- Isotopic peak pattern deconvolution for Protein Mass Spectrometry by template matching
- ipred
- Improved Predictors
- ipred
- Improved Predictors
- iprior
- Linear Regression using I-Priors
- ips
- Interfaces to Phylogenetic Software in R
- IPSUR
- Introduction to Probability and Statistics Using R
- IPSUR
- Introduction to Probability and Statistics Using R
- IPtoCountry
- Convert IP Addresses to Country Names or Full Location with Geoplotting
- iptools
- Manipulate, Validate and Resolve 'IP' Addresses
- ipw
- Estimate Inverse Probability Weights
- IQCC
- Improved Quality Control Charts
- iqLearn
- Interactive Q-Learning
- iqspr
- Generate Chemical Strings (SMILES) with the Inverse QSPR Model
- irace
- Iterated Racing for Automatic Algorithm Configuration
- iRafNet
- Integrative Random Forest for Gene Regulatory Network Inference
- IRanges
- Infrastructure for manipulating intervals on sequences
- IRATER
- A R Interface for the Instantaneous RATEs (IRATE) Model
- IRdisplay
- 'Jupyter' Display Machinery
- iRefR
- iRefIndex Manager
- iRegression
- Regression Methods for Interval-Valued Variables
- iRepro
- Reproducibility for Interval-Censored Data
- IrishDirectorates
- Irish Companies' Boards from 2003 to 2013
- IRISMustangMetrics
- Statistics and Metrics for Seismic Data
- IRISSeismic
- Classes and Methods for Seismic Data Analysis
- irlba
- Fast Truncated SVD, PCA and Symmetric Eigendecomposition for Large Dense and Sparse Matrices
- irr
- Various Coefficients of Interrater Reliability and Agreement
- irt
- irt. Spady's Item Response Model
- irtDemo
- Item Response Theory Demo Collection
- irtoys
- A Collection of Functions Related to Item Response Theory (IRT)
- IRTpp
- Estimating IRT Parameters using the IRT Methodology
- irtProb
- Utilities and Probability Distributions Related to Multidimensional Person Item Response Models
- irtrees
- Estimation of Tree-Based Item Response Models
- IRTShiny
- Item Response Theory via Shiny
- isa2
- The Iterative Signature Algorithm
- ISBF
- Iterative Selection of Blocks of Features - ISBF
- isdals
- Provides datasets for Introduction to Statistical Data Analysis for the Life Sciences
- ISDA.R
- interval symbolic data analysis for R
- isdparser
- Parse 'NOAA' Integrated Surface Data Files
- iSeq
- Bayesian Hierarchical Modeling of ChIP-seq Data Through Hidden Ising Models
- IsingFit
- Fitting Ising Models Using the ELasso Method
- isingLenzMC
- Monte Carlo for Classical Ising Model
- IsingSampler
- Sampling Methods and Distribution Functions for the Ising Model
- island
- Stochastic Island Biogeography Theory Made Easy
- ISLR
- Data for An Introduction to Statistical Learning with Applications in R
- ismev
- An Introduction to Statistical Modeling of Extreme Values
- Iso
- Functions to Perform Isotonic Regression
- isobar
- Analysis and quantitation of isobarically tagged MSMS proteomics data
- IsoCI
- Confidence intervals for current status data based on transformations and bootstrap.
- isocir
- Isotonic Inference for Circular data
- ISOcodes
- Selected ISO Codes
- IsoGene
- Order-Restricted Inference for Microarray Experiments
- IsoGene
- Order-Restricted Inference for Microarray Experiments
- IsoGeneGUI
- A graphical user interface to conduct a dose-response analysis of microarray data
- IsoGeneGUI
- A graphical user interface to conduct a dose-response analysis of microarray data
- IsolationForest
- Isolation Forest
- ISoLDE
- Integrative Statistics of alleLe Dependent Expression
- isomiRs
- Analyze isomiRs and miRNAs from small RNA-seq
- isopam
- Isopam (Clustering)
- isopat
- Calculation of isotopic pattern for a given molecular formula
- isoph
- Isotonic Proportional Hazards Model
- IsoplotR
- Statistical Toolbox for Radiometric Geochronology
- ISOpureR
- Deconvolution of Tumour Profiles
- IsoriX
- Isoscape Computation and Inference of Spatial Origins using Mixed Models
- IsoSpecR
- An R Interface to the IsoSpec Algorithm
- isotone
- Active Set and Generalized PAVA for Isotone Optimization
- isotone
- Active Set and Generalized PAVA for Isotone Optimization
- isotonic.pen
- Penalized Isotonic Regression in one and two dimensions
- IsotopeR
- Stable Isotope Mixing Model
- ISOweek
- Week of the year and weekday according to ISO 8601
- ISR3
- Iterative Sequential Regression
- issb
- R code associated with the book chapter "Simulation of stochastic kinetic models"
- isuR
- Introducing statistics using R
- isva
- Independent Surrogate Variable Analysis
- ISwR
- Introductory Statistics with R
- ITALICS
- ITALICS
- itcSegment
- Individual Tree Crowns Segmentation
- ITEMAN
- Classical Item Analysis
- iteRates
- Parametric rate comparison
- iterativeBMA
- The Iterative Bayesian Model Averaging (BMA) algorithm
- iterativeBMAsurv
- The Iterative Bayesian Model Averaging (BMA) Algorithm For Survival Analysis
- iterators
- Provides Iterator Construct for R
- iterators
- Provides Iterator Construct for R
- iterLap
- Approximate probability densities by iterated Laplace Approximations
- iterpc
- Efficient Iterator for Permutations and Combinations
- itertools
- Iterator Tools
- itertools
- Iterator Tools
- itertools2
- itertools2: Functions creating iterators for efficient looping
- ITGM
- Individual Tree Growth Modeling
- ithir
- Functions and Algorithms Specific to Pedometrics
- itree
- Tools for classification and regression trees, with an emphasis on interpretability.
- its
- Irregular Time Series
- itsadug
- Interpreting Time Series and Autocorrelated Data Using GAMMs
- itsmr
- Time series analysis package for students
- IUPS
- Incorporating Uncertainties in Propensity Scores
- IVAS
- Identification of genetic Variants affecting Alternative Splicing
- ivbma
- Bayesian Instrumental Variable Estimation and Model Determination via Conditional Bayes Factors
- ivfixed
- Instrumental fixed effect panel data model
- ivlewbel
- Uses heteroscedasticity to estimate mismeasured and endogenous regressor models
- ivmodel
- Statistical Inference and Sensitivity Analysis for Instrumental Variables Model
- ivpack
- Instrumental Variable Estimation.
- ivpanel
- Instrumental Panel Data Models
- ivprobit
- Instrumental variables probit model
- iWeigReg
- Improved methods for causal inference and missing data problems
- iWISA
- Wavelet-Based Index of Storm Activity
- jaatha
- Simulation-Based Maximum Likelihood Parameter Estimation
- jackknifeKME
- Jackknife Estimates of Kaplan-Meier Estimators or Integrals
- jackstraw
- Statistical Inference of Variables Driving Systematic Variation
- jacobi
- Jacobi Rotations
- JacobiEigen
- Classical Jacobi Eigensolution Algorithm
- jacpop
- Jaccard Index for Population Structure Identification
- JADE
- Blind Source Separation Methods Based on Joint Diagonalization and Some BSS Performance Criteria
- jagsUI
- A Wrapper Around 'rjags' to Streamline 'JAGS' Analyses
- JAGUAR
- Joint Analysis of Genotype and Group-Specific Variability Using a Novel Score Test Approach to Map Expression Quantitative Trait Loci (eQTL)
- james.analysis
- Analysis Tools for the 'JAMES' Framework
- janeaustenr
- Jane Austen's Complete Novels
- janitor
- Simple Tools for Examining and Cleaning Dirty Data
- JASPAR
- R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices.
- JavaGD
- Java Graphics Device
- JBTools
- Misc Small Tools and Helper Functions for Other Code of J. Buttlar
- JBTools
- Misc Small Tools and Helper Functions for Other Code of J. Buttlar
- JDEoptim
- j-Differential Evolution Optimization
- jetset
- One-to-One Gene-Probeset Mapping for Affymetrix Human Microarrays
- JGEE
- Joint Generalized Estimating Equation Solver
- JGL
- Performs the Joint Graphical Lasso for sparse inverse covariance estimation on multiple classes
- JGR
- JGR - Java GUI for R
- jiebaR
- Chinese Text Segmentation
- jiebaRD
- Chinese Text Segmentation Data for jiebaR Package
- jjplot
- The jjplot plotting library for making beautiful plots fast and simple.
- JM
- Joint Modeling of Longitudinal and Survival Data
- JMbayes
- Joint Modeling of Longitudinal and Time-to-Event Data under a Bayesian Approach
- jmcm
- Joint Mean-Covariance Models using 'Armadillo' and S4
- JMdesign
- Joint Modeling of Longitudinal and Survival Data - Power Calculation
- jmetrik
- Tools for Interacting with 'jMetrik'
- Jmisc
- Julian Miscellaneous Function
- jmosaics
- Joint analysis of multiple ChIP-Seq data sets
- jmotif
- Time Series Analysis Toolkit Based on Symbolic Aggregate Dicretization, i.e. SAX
- jmuOutlier
- Permutation Tests for Nonparametric Statistics
- jobqueue
- Generic Asynchronous Job Queue
- jocre
- Joint Confidence Regions
- joda
- JODA algorithm for quantifying gene deregulation using knowledge
- Johnson
- Johnson Transformation
- JohnsonDistribution
- Johnson Distribution
- joineR
- Joint modelling of repeated measurements and time-to-event data
- joint.Cox
- Penalized Likelihood Estimation and Dynamic Prediction under the Joint Frailty-Copula Models Between Tumour Progression and Death for Meta-Analysis
- jointDiag
- Joint Approximate Diagonalization of a set of square matrices
- JointModel
- Semiparametric Joint Models for Longitudinal and Counting Processes
- jointNmix
- Joint N-Mixture Models for Site-Associated Species
- jointPm
- Risk estimation using the joint probability method
- JointRegBC
- Joint Modelling of Mixed Correlated Binary and Continuous Responses : A Latent Variable Approach
- jointseg
- Joint segmentation of multivariate (copy number) signals
- joinXL
- Perform Joins or Minus Queries on 'Excel' Files
- jomo
- Multilevel Joint Modelling Multiple Imputation
- JOP
- Joint Optimization Plot
- JoSAE
- Functions for some Unit-Level Small Area Estimators and their Variances
- jose
- Javascript Object Signing and Encryption
- JOUSBoost
- Implements Under/Oversampling for Probability Estimation
- jpeg
- Read and write JPEG images
- JPEN
- Covariance and Inverse Covariance Matrix Estimation Using Joint Penalty
- jpmesh
- Utilities for Japanese Mesh Code
- jpndistrict
- Create Japanese Administration Area and Office Maps
- JPSurv
- Methods for population-based cancer survival analysis
- jqr
- Client for 'jq', a JSON Processor
- JRF
- Joint Random Forest (JRF) for the Simultaneous Estimation of Multiple Related Networks
- jrich
- Jack-Knife Support for Evolutionary Distinctiveness Indices I and W
- jrvFinance
- Basic Finance; NPV/IRR/Annuities/Bond-Pricing; Black Scholes
- js
- Tools for Working with JavaScript in R
- JSM
- Semiparametric Joint Modeling of Survival and Longitudinal Data
- jSonarR
- jSonar Analytics Platform API for R
- jsonlite
- A Robust, High Performance JSON Parser and Generator for R
- jsonvalidate
- Validate 'JSON'
- jss
- Journal of Statistical Software Utilities
- jtGWAS
- Efficient Jonckheere-Terpstra Test Statistics
- jtrans
- Johnson Transformation for Normality
- jug
- A Simple Web Framework for R
- Julia
- Fractal Image Data Generator
- JunctionSeq
- JunctionSeq: A Utility for Detection of Differential Exon and Splice-Junction Usage in RNA-Seq data
- junr
- Access Open Data Through the Junar API
- jvnVaR
- Value at Risk
- JWileymisc
- Miscellaneous Utilities and Functions
- jwutil
- Tools for Data Manipulation and Testing
- kamila
- Methods for Clustering Mixed-Type Data
- KANT
- Package to identify and sort genes overexpressed
- kantorovich
- Kantorovich Distance Between Probability Measures
- KappaGUI
- GUI for Cohen's and Fleiss' Kappa
- kappalab
- Non-Additive Measure and Integral Manipulation Functions
- kappaSize
- Sample Size Estimation Functions for Studies of Interobserver Agreement
- KappaV
- Calculates "vectorial Kappa", an index of congruence between patchy mosaics.
- kaps
- K-Adaptive Partitioning for Survival data
- karaoke
- Remove Vocals from a Song
- KATforDCEMRI
- Kinetic analysis and visualization of DCE-MRI data.
- kcirt
- k-Cube Thurstonian IRT Models
- KCsmart
- Multi sample aCGH analysis package using kernel convolution
- kdecopula
- Kernel Smoothing for Bivariate Copula Densities
- kdetrees
- Nonparametric method for identifying discordant phylogenetic trees
- kebabs
- Kernel-Based Analysis Of Biological Sequences
- kedd
- Kernel Estimator and Bandwidth Selection for Density and Its Derivatives
- keep
- Arrays with Better Control over Dimension Dropping
- KEGGgraph
- KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor
- KEGGlincs
- Visualize all edges within a KEGG pathway and overlay LINCS data [option]
- keggorthology
- graph support for KO, KEGG Orthology
- KEGGprofile
- An annotation and visualization package for multi-types and multi-groups expression data in KEGG pathway
- KEGGREST
- Client-side REST access to KEGG
- kehra
- Collect, Assemble and Model Air Pollution, Weather and Health Data
- kelvin
- Calculate Solutions to the Kelvin Differential Equation using Bessel Functions
- Kendall
- Kendall rank correlation and Mann-Kendall trend test
- kequate
- The Kernel Method of Test Equating
- kerdiest
- Nonparametric kernel estimation of the distribution function. Bandwidth selection and estimation of related functions.
- KERE
- Expectile Regression in Reproducing Kernel Hilbert Space
- kergp
- Gaussian Process Laboratory
- kernDeepStackNet
- Kernel Deep Stacking Networks
- kerndwd
- Distance Weighted Discrimination (DWD) and Kernel Methods
- kernelFactory
- Kernel Factory: An Ensemble of Kernel Machines
- Kernelheaping
- Kernel Density Estimation for Heaped and Rounded Data
- KernelKnn
- Kernel k Nearest Neighbors
- kernlab
- Kernel-Based Machine Learning Lab
- kernscr
- Kernel Machine Score Test for Semi-Competing Risks
- KernSmooth
- Functions for Kernel Smoothing Supporting Wand & Jones (1995)
- KernSmoothIRT
- Nonparametric Item Response Theory
- keyplayer
- Locating Key Players in Social Networks
- keypress
- Wait for a Key Press in a Terminal
- keyringr
- Decrypt Passwords from Gnome Keyring and Windows Data Protection API
- KFAS
- Kalman Filter and Smoother for Exponential Family State Space Models
- kfigr
- Integrated Code Chunk Anchoring and Referencing for R Markdown Documents
- KFKSDS
- Kalman Filter, Smoother and Disturbance Smoother
- khb
- KHB: Comparing nonlinear regression models
- kimisc
- Kirill's Miscellaneous Functions
- kimisc
- Kirill's miscellaneous functions
- kimod
- A k-tables approach to integrate multiple Omics-Data
- kin.cohort
- Analysis of Kin-Cohort Studies
- kineticF
- Framework for the Analysis of Kinetic Visual Field Data
- kinfit
- Routines for Fitting Kinetic Models to Chemical Degradation Data
- kinfit
- Routines for Fitting Kinetic Models to Chemical Degradation Data
- kinn
- An Implementation of 'kinn' Algorithm, a Graph Based Regression Model
- kinship2
- Pedigree Functions
- kissmig
- a Keep It Simple Species Migration Model
- kitagawa
- Spectral response of water wells to harmonic strain and pressure
- kknn
- Weighted k-Nearest Neighbors
- klaR
- Classification and visualization
- klaR
- Classification and visualization
- klausuR
- Multiple Choice Test Evaluation
- klausuR
- Multiple Choice Test Evaluation
- klin
- Linear equations with Kronecker structure
- kmc
- Kaplan-Meier Estimator with Constraints for Right Censored Data -- a Recursive Computational Algorithm
- km.ci
- Confidence intervals for the Kaplan-Meier estimator
- kmconfband
- Kaplan-Meier Simultaneous Confidence Band for the Survivor Function
- KMDA
- Kernel-Based Metabolite Differential Analysis
- kmeans.ddR
- Distributed k-Means for Big Data using 'ddR' API
- kmeansstep
- stepwise k-means cluster model selection
- Kmer
- Computes a matrix of K-mer counts.
- kmi
- Kaplan-Meier multiple imputation for the analysis of cumulative incidence functions in the competing risks setting
- Kmisc
- Kevin Miscellaneous
- kml
- K-Means for Longitudinal Data
- kml3d
- K-Means for Joint Longitudinal Data
- kmlcov
- Clustering longitudinal data using the likelihood as a metric of distance
- kmlShape
- K-Means for Longitudinal Data using Shape-Respecting Distance
- kmndirs
- k-Mean-Directions Algorithm
- kmodR
- K-Means with Simultaneous Outlier Detection
- KMsurv
- Data sets from Klein and Moeschberger (1997), Survival Analysis
- knapsack
- Knapsack Routines
- KnapsackSampling
- Generate Feasible Samples of a Knapsack Problem
- knitcitations
- Citations for 'Knitr' Markdown Files
- knitLatex
- 'Knitr' Helpers - Mostly Tables
- knitr
- A General-Purpose Package for Dynamic Report Generation in R
- knitrBootstrap
- Knitr Bootstrap Framework
- knncat
- Nearest-neighbor Classification with Categorical Variables
- knnGarden
- Multi-distance based k-Nearest Neighbors
- knnIndep
- Independence tests and benchmarks
- KnockKnockJokes
- Knock-Knock Jokes
- knockoff
- Knockoff Filter for Controlling the False Discovery Rate
- knotR
- Knot Diagrams using Bezier Curves
- kntnr
- R Client for 'kintone' API
- kobe
- Tools for the provision of scientific fisheries management advice
- KODAMA
- Knowledge Discovery by Accuracy Maximization
- kofnGA
- A Genetic Algorithm for Fixed-Size Subset Selection
- KOGMWU
- Functional Summary and Meta-Analysis of Gene Expression Data
- kohonen
- Supervised and Unsupervised Self-Organising Maps
- kokudosuuchi
- R Interface to e-Stat API
- kolmim
- An Improved Evaluation of Kolmogorov's Distribution
- KoNLP
- Korean NLP Package
- koRpus
- An R Package for Text Analysis
- KoulMde
- Koul's Minimum Distance Estimation in Linear Regression and Autoregression Model by Coordinate Descent Algorithm
- Kpart
- Cubic Spline Fitting with Knot Selection
- kpodclustr
- Method for Clustering Partially Observed Data
- kriens
- Continuation Passing Style Development
- kriging
- Ordinary Kriging
- KrigInv
- Kriging-based Inversion for Deterministic and Noisy Computer Experiments
- KRLS
- Kernel-based Regularized Least squares (KRLS)
- krm
- Kernel Based Regression Models
- ks
- Kernel Smoothing
- kSamples
- K-Sample Rank Tests and their Combinations
- KScorrect
- Lilliefors-Corrected Kolmogorov-Smirnoff Goodness-of-Fit Tests
- KSD
- Goodness-of-Fit Tests using Kernelized Stein Discrepancy
- kselection
- Selection of K in K-Means Clustering
- ksrlive
- Identify Kinase Substrate Relationships Using Dynamic Data
- kst
- Knowledge Space Theory
- ks.test
- Proposed Revision to stats::ks.test()
- ktsolve
- Configurable function for solving families of nonlinear equations
- ktspair
- k-Top Scoring Pairs for Microarray Classification
- kulife
- Datasets and functions from the (now non-existing) Faculty of Life Sciences, University of Copenhagen
- kwb.hantush
- Calculation of Groundwater Mounding Beneath an Infiltration Basin
- kyotil
- Utility Functions by Youyi, Krisz and Others
- kza
- Kolmogorov-Zurbenko Adaptive Filters
- kzfs
- Multi-Scale Motions Separation with Kolmogorov-Zurbenko Periodogram Signals
- kzft
- Kolmogorov-Zurbenko Fourier Transform and Applications
- kzs
- Kolmogorov-Zurbenko Spatial Smoothing and Applications
- l0ara
- Sparse Generalized Linear Model with L0 Approximation for Feature Selection
- L1pack
- Routines for L1 Estimation
- l2boost
- l2boost - Friedman's boosting algorithm for regularized linear regression
- labdsv
- Ordination and Multivariate Analysis for Ecology
- labeledLoop
- Labeled Loop
- labeling
- Axis Labeling
- labeling
- Axis Labeling
- labelled
- Manipulating Labelled Data
- labelrank
- Predicting Rankings of Labels
- label.switching
- Relabelling MCMC Outputs of Mixture Models
- labeltodendro
- Convert labels or tables to a dendrogram
- labeltodendro
- Convert labels or tables to a dendrogram
- LabourMarketAreas
- Identification, Tuning, Visualisation and Analysis of Labour Market Areas
- labstatR
- Libreria Del Laboratorio Di Statistica Con R
- labstatR
- Libreria Del Laboratorio Di Statistica Con R
- labstats
- Data Sets for the Book "Experimental Design for Laboratory Biologists"
- laeken
- Estimation of indicators on social exclusion and poverty
- laercio
- Duncan test, Tukey test and Scott-Knott test.
- LaF
- Fast access to large ASCII files
- laGP
- Local Approximate Gaussian Process Regression
- Lahman
- Sean 'Lahman' Baseball Database
- Lahman
- Sean Lahman's Baseball Database
- LakeMetabolizer
- Tools for the Analysis of Ecosystem Metabolism
- lakemorpho
- Lake Morphometry Metrics in R
- laketemps
- Lake Temperatures Collected by Situ and Satellite Methods from 1985-2009
- Lambda4
- Collection of Internal Consistency Reliability Coefficients.
- lambda.r
- Modeling Data with Functional Programming
- lambda.tools
- Tools for Modeling Data with Functional Programming
- LambertW
- Probabilistic Models to Analyze and Gaussianize Heavy-Tailed, Skewed Data
- lamW
- Lambert-W Function
- LANDD
- Liquid Association for Network Dynamics Detection
- landest
- Landmark Estimation of Survival and Treatment Effect
- landpred
- Landmark Prediction of a Survival Outcome
- landsat
- Radiometric and topographic correction of satellite imagery
- landsat8
- Landsat 8 Imagery Rescaled to Reflectance, Radiance and/or Temperature
- landscapeR
- Categorical Landscape Simulation Facility
- Langevin
- Langevin Analysis in One and Two Dimensions
- languageR
- Data sets and functions with "Analyzing Linguistic Data: A practical introduction to statistics".
- LaplaceDeconv
- Laplace Deconvolution with Noisy Discrete Non-Equally Spaced Observations on a Finite Time Interval
- LaplacesDemon
- Complete Environment for Bayesian Inference
- lapmix
- Laplace Mixture Model in Microarray Experiments
- lar
- History of labour relations package
- LARF
- Local Average Response Functions for Instrumental Variable Estimation of Treatment Effects
- largeList
- Serialization Interface for Large List Objects
- largeVis
- High-Quality Visualizations of Large, High-Dimensional Datasets
- lars
- Least Angle Regression, Lasso and Forward Stagewise
- laser
- Likelihood Analysis of Speciation/Extinction Rates from Phylogenies
- lasso2
- L1 constrained estimation aka `lasso'
- LassoBacktracking
- Modelling Interactions in High-Dimensional Data with Backtracking
- lassogrp
- Lasso Regression including group lasso and adaptive lasso
- lassoscore
- High-Dimensional Inference with the Penalized Score Test
- lassoshooting
- L1 regularized regression (Lasso) solver using the Cyclic Coordinate Descent algorithm aka Lasso Shooting
- lasvmR
- A Simple Wrapper for the LASVM Solver
- latdiag
- Draws Diagrams Useful for Checking Latent Scales
- latentnet
- Latent Position and Cluster Models for Statistical Networks
- LatentREGpp
- Item Response Theory Implemented in R and Cpp
- Laterality
- Functions to Calculate Common Laterality Statistics in Primatology
- latex2exp
- Use LaTeX Expressions in Plots
- lattice
- Trellis Graphics for R
- lattice
- Trellis Graphics for R
- latticeDensity
- Density estimation and nonparametric regression on irregular regions
- latticeExtra
- Extra Graphical Utilities Based on Lattice
- latticeExtra
- Extra Graphical Utilities Based on Lattice
- LatticeKrig
- Multiresolution Kriging Based on Markov Random Fields
- lava
- Latent Variable Models
- lava
- Latent Variable Models
- lavaan
- Latent Variable Analysis
- lavaan.shiny
- Latent Variable Analysis with Shiny
- lavaan.survey
- Complex Survey Structural Equation Modeling (SEM)
- lava.mixture
- Mixtures of Linear Latent Variable Models
- lava.tobit
- LVM with censored and binary outcomes
- lava.tobit
- LVM with censored and binary outcomes
- lawn
- Client for 'Turfjs' for 'Geospatial' Analysis
- lawstat
- Tools for Biostatistics, Public Policy, and Law
- lazy
- Lazy Learning for Local Regression
- lazyData
- A LazyData Facility
- lazyeval
- Lazy (Non-Standard) Evaluation
- LazyMLVA
- LazyMLVA
- lazyrmd
- Render R Markdown Outputs Lazily
- lazysql
- Lazy SQL Programming
- lazyWeave
- LaTeX Wrappers for R Users
- lba
- Latent Budget Analysis for Compositional Data
- LBE
- Estimation of the false discovery rate.
- lbfgs
- Limited-memory BFGS Optimization
- lbfgsb3
- Limited Memory BFGS Minimizer with Bounds on Parameters
- lbiassurv
- Length-biased correction to survival curve estimation.
- lbiassurv
- Length-biased correction to survival curve estimation.
- LCA
- Localised Co-Dependency Analysis
- LCAextend
- Latent Class Analysis (LCA) with familial dependence in extended pedigrees
- lcda
- Latent Class Discriminant Analysis
- LCFdata
- Data sets for package ``LMERConvenienceFunctions''
- lclGWAS
- Efficient Estimation of Discrete-Time Multivariate Frailty Model Using Exact Likelihood Function for Grouped Survival Data
- LCMCR
- Bayesian Nonparametric Latent-Class Capture-Recapture
- lcmix
- Layered and chained mixture models
- lcmm
- Extended Mixed Models Using Latent Classes and Latent Processes
- lcopula
- Liouville Copulas
- lctools
- Local Correlation, Spatial Inequalities, Geographically Weighted Regression and Other Tools
- lda
- Collapsed Gibbs Sampling Methods for Topic Models
- ldamatch
- Selection of Statistically Similar Research Groups
- ldatuning
- Tuning of the Latent Dirichlet Allocation Models Parameters
- LDAvis
- Interactive Visualization of Topic Models
- ldblock
- data structures for linkage disequilibrium measures in populations
- ldbod
- Local Density-Based Outlier Detection
- ldbounds
- Lan-DeMets Method for Group Sequential Boundaries
- LDcorSV
- Linkage disequilibrium corrected by the structure and the relatedness
- LDExplorer
- Efficient Whole-Genome LD Based Haplotpe Block Recognition
- LDheatmap
- Graphical Display of Pairwise Linkage Disequilibria Between SNPs
- ldlasso
- LD LASSO Regression for SNP Association Study
- LDOD
- Finding Locally D-optimal optimal designs for some nonlinear and generalized linear models.
- LDOD
- Finding Locally D-optimal optimal designs for some nonlinear and generalized linear models.
- LDPD
- Probability of Default Calibration
- ldr
- Methods for likelihood-based dimension reduction in regression
- LDRTools
- Tools for Linear Dimension Reduction
- ldstatsHD
- Linear Dependence Statistics for High-Dimensional Data
- LDtests
- Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium
- LEA
- LEA: an R package for Landscape and Ecological Association Studies
- leaderCluster
- Leader Clustering Algorithm
- LeafAngle
- Analysis and Visualization of Plant Leaf Angle Distributions
- LeafArea
- Rapid Digital Image Analysis of Leaf Area
- leaflet
- Create Interactive Web Maps with the JavaScript 'Leaflet' Library
- leafletR
- Interactive Web-Maps Based on the Leaflet JavaScript Library
- LEANR
- Finds "Local Subnetworks" Within an Interaction Network which Show Enrichment for Differentially Expressed Genes
- LEAP
- Constructing Gene Co-Expression Networks for Single-Cell RNA-Sequencing Data Using Pseudotime Ordering
- LEAPFrOG
- Likelihood Estimation of Admixture in Parents From Offspring Genotypes
- leapp
- latent effect adjustment after primary projection
- leaps
- regression subset selection
- LearnBayes
- Functions for Learning Bayesian Inference
- learningCurve
- An Implementation of Crawford's and Wright's Learning Curve Production Functions
- learningr
- Data and functions to accompany the book "Learning R".
- learNN
- Examples of Neural Networks
- learnstats
- An Interactive Environment for Learning Statistics
- LedPred
- Learning from DNA to Predict Enhancers
- LeerFotos
- Extrae la informacion de los metadatos de imagenes .jpg
- lefse
- Phylogenetic and Functional Analyses for Ecology
- leiv
- Bivariate Linear Errors-In-Variables Estimation
- LeLogicielR
- Functions and datasets to accompany the book "Le logiciel R: Maitriser le langage, Effectuer des analyses statistiques" (french)
- LendingClub
- A Lending Club API Wrapper
- les
- Identifying Differential Effects in Tiling Microarray Data
- lessR
- Less Code, More Results
- lestat
- A package for LEarning STATistics
- lethal
- Compute lethal doses (LD) with confidence intervals
- letsR
- Tools for Data Handling and Analysis in Macroecology
- lettercase
- Utilities for Formatting Strings with Consistent Capitalization, Word Breaks and White Space
- LexisPlotR
- Plot Lexis Diagrams for Demographic Purposes
- lexRankr
- Extractive Summarization of Text with the LexRank Algorithm
- lfa
- Logistic Factor Analysis for Categorical Data
- lfactors
- Factors with Levels
- lfda
- Local Fisher Discriminant Analysis
- LFDR.MLE
- Estimation of the Local False Discovery Rates by Type II Maximum Likelihood Estimation
- lfe
- Linear Group Fixed Effects
- lfl
- Linguistic Fuzzy Logic
- lfstat
- Calculation of Low Flow Statistics for Daily Stream Flow Data
- lfstat
- Calculation of Low Flow Statistics for Daily Stream Flow Data
- lga
- Tools for linear grouping analysis (LGA)
- lgarch
- Simulation and Estimation of Log-GARCH Models
- lgcp
- Log-Gaussian Cox Process
- LGEWIS
- Tests for Genetic Association/Gene-Environment Interaction in Longitudinal Gene-Environment-Wide Interaction Studies
- LGRF
- Set-Based Tests for Genetic Association in Longitudinal Studies
- lgtdl
- A set of methods for longitudinal data objects.
- lhs
- Latin Hypercube Samples
- libamtrack
- Computational Routines for Proton and Ion Radiotherapy
- libamtrack
- Computational Routines for Proton and Ion Radiotherapy
- libcoin
- Linear Test Statistics for Permutation Inference
- LiblineaR
- Linear Predictive Models Based on the LIBLINEAR C/C++ Library
- LiblineaR.ACF
- Linear Classification with Online Adaptation of Coordinate Frequencies
- Libra
- Linearized Bregman Algorithms for Generalized Linear Models
- LICORS
- Light Cone Reconstruction of States - Predictive State Estimation From Spatio-Temporal Data
- LICurvature
- Sensitivity Analysis for Case Weight in Normal Linear Regression
- lifecontingencies
- Financial and Actuarial Mathematics for Life Contingencies
- lifecourse
- Quantification of Lifecourse Fluidity
- LifeHist
- Life History Models of Individuals
- LifeTables
- Two-Parameter HMD Model Life Table System
- lift
- Compute the Top Decile Lift and Plot the Lift Curve
- liftLRD
- Wavelet Lifting Estimators of the Hurst Exponent for Regularly and Irregularly Sampled Time Series
- liftr
- Dockerize R Markdown Documents
- LightningR
- Tools for Communication with Lightning-Viz Server
- lightsout
- Implementation of the 'Lights Out' Puzzle Game
- LIHNPSD
- Poisson Subordinated Distribution
- likelihood
- Methods for Maximum Likelihood Estimation
- likelihoodAsy
- Functions for Likelihood Asymptotics
- likeLTD
- Tools to Evaluate DNA Profile Evidence
- likert
- Functions to Analyze and Visualize Likert Type Items
- LIM
- Linear Inverse Model examples and solution methods.
- LIM
- Linear Inverse Model examples and solution methods
- limitplot
- Jitter/CI Plot with Ordered Points Below the Limit of Detection
- limma
- Linear Models for Microarray Data
- limmaGUI
- GUI for limma package with two color microarrays
- limSolve
- Solving Linear Inverse Models
- limSolve
- Solving Linear Inverse Models
- linbin
- Binning and Plotting of Linearly Referenced Data
- LINC
- co-expression of lincRNAs and protein-coding genes
- LinCal
- Static Univariate Frequentist and Bayesian Linear Calibration
- LindenmayeR
- Functions to Explore L-Systems (Lindenmayer Systems)
- LindleyR
- The Lindley Distribution and Its Modifications
- LinearizedSVR
- Linearized Support Vector Regression
- LinearRegressionMDE
- Minimum Distance Estimation in Linear Regression Model
- linear.tools
- Manipulate Formulas and Evaluate Marginal Effects
- linERR
- Linear Excess Relative Risk Model
- lineup
- Lining Up Two Sets of Measurements
- linkcomm
- Tools for Generating, Visualizing, and Analysing Link Communities in Networks
- LinkedMatrix
- Column-Linked and Row-Linked Matrices
- linkim
- Linkage information based genotype imputation method
- linkR
- 3D Lever and Linkage Mechanism Modeling
- linLIR
- linear Likelihood-based Imprecise Regression
- linLIR
- linear Likelihood-based Imprecise Regression
- Linnorm
- Linear model and normality based transformation method (Linnorm)
- linprog
- Linear Programming / Optimization
- linprog
- Linear Programming / Optimization
- LinRegInteractive
- Interactive Interpretation of Linear Regression Models
- LINselect
- Selection of Linear Estimators
- lintools
- Manipulation of Linear Systems of (in)Equalities
- lintr
- Static R Code Analysis
- liqueueR
- Implements Queue, PriorityQueue and Stack Classes
- LiquidAssociation
- LiquidAssociation
- lira
- LInear Regression in Astronomy
- liso
- Fitting lasso penalised additive isotone models
- lisp
- List-processing Ã la SRFI-1
- lisp
- List-processing Ã la SRFI-1
- lisrelToR
- Import output from LISREL into R
- list
- Statistical Methods for the Item Count Technique and List Experiment
- listdtr
- List-Based Rules for Dynamic Treatment Regimes
- listenv
- Environments Behaving (Almost) as Lists
- LIStest
- Tests of independence based on the Longest Increasing Subsequence
- listless
- Convert Lists to Tidy Data Frames
- listviewer
- 'htmlwidget' for Interactive Views of R Lists
- listWithDefaults
- List with Defaults
- littler
- R at the Command-Line via 'r'
- livechatR
- R Wrapper for LiveChat REST API
- ljr
- Logistic Joinpoint Regression
- llama
- Leveraging Learning to Automatically Manage Algorithms
- lle
- Locally linear embedding
- lllcrc
- Local Log-linear Models for Capture-Recapture
- LLSR
- Data Analysis of Liquid-Liquid Systems
- lm.beta
- Add Standardized Regression Coefficients to lm-Objects
- lm.br
- Linear Model with Breakpoint
- lm.br
- Linear Model with Breakpoint
- lmdme
- Linear Model decomposition for Designed Multivariate Experiments
- lme4
- Linear Mixed-Effects Models using 'Eigen' and S4
- lmec
- Linear Mixed-Effects Models with Censored Responses
- lmem.gwaser
- Linear Mixed Effects Models for Genome-Wide Association Studies
- lmem.qtler
- Linear Mixed Effects Models for QTL Mapping for Multienvironment and Multitrait Analysis
- lmeNB
- Compute the Personalized Activity Index Based on a Negative Binomial Model
- lmeNBBayes
- Compute the Personalized Activity Index Based on a Flexible Bayesian Negative Binomial Model
- lmenssp
- Linear Mixed Effects Models with Non-Stationary Stochastic Processes
- LMERConvenienceFunctions
- Model Selection and Post-hoc Analysis for (G)LMER Models
- lmeresampler
- Bootstrap Methods for Nested Linear Mixed-Effects Models
- lmerTest
- Tests in Linear Mixed Effects Models
- lmeSplines
- Add smoothing spline modelling capability to nlme.
- lmeSplines
- Add smoothing spline modelling capability to nlme.
- LMest
- Latent Markov Models with and without Covariates
- lmeVarComp
- Testing for a subset of variance components in linear mixed models
- lmf
- Functions for estimation and inference of selection in age-structured populations
- lmfor
- Functions for Forest Biometrics
- LMGene
- LMGene Software for Data Transformation and Identification of Differentially Expressed Genes in Gene Expression Arrays
- lmm
- Linear Mixed Models
- lmmlasso
- Linear mixed-effects models with Lasso
- lmmot
- Multiple Ordinal Tobit (MOT) Model
- lmms
- Linear Mixed Effect Model Splines for Modelling and Analysis of Time Course Data
- lmodel2
- Model II Regression
- lmodel2
- Model II Regression
- lmom
- L-moments
- lmomco
- L-Moments, Censored L-Moments, Trimmed L-Moments, L-Comoments, and Many Distributions
- Lmoments
- L-Moments and Quantile Mixtures
- lmomRFA
- Regional frequency analysis using L-moments
- lmPerm
- Permutation Tests for Linear Models
- lmridge
- Linear Ridge Regression with Ridge Penalty and Ridge Statistics
- lmsqreg
- LMS (Cole-Green Stat in Med 1992 quantile regression)
- lmSubsets
- Exact linear subset regression
- lmSupport
- Support for Linear Models
- lmtest
- Testing Linear Regression Models
- lnar
- Inference for stochastic kinetic genetic networks.
- LncDM
- The Different Methylation Sites, Elements and Regions of lncRNA
- LncMod
- Predicting Modulator and Functional/Survival Analysis
- LncPath
- Identifying the Pathways Regulated by LncRNA Sets of Interest
- LncPriCNet
- Prioritizing Candidate LncRNAs Based on a Composite Multi-Level Network
- LNIRT
- LogNormal Response Time Item Response Theory Models
- loa
- Lattice Options and Add-Ins
- loa
- Lattice Options and Add-Ins
- LOBSTAHS
- Lipid and Oxylipin Biomarker Screening through Adduct Hierarchy Sequences
- localdepth
- Local Depth
- localEM
- Nonparametric Modelling of Spatial Risk for Areal Disease Data
- localgauss
- Estimating Local Gaussian Parameters
- localsolver
- R API to LocalSolver
- locClass
- Collection of Local Classification Methods
- locClassData
- Collection of Artificial Classification Problems
- locfdr
- Computes Local False Discovery Rates
- LocFDRPois
- Functions for Performing Local FDR Estimation when Null and Alternative are Poisson
- locfit
- Local Regression, Likelihood and Density Estimation.
- locits
- Test of Stationarity and Localized Autocovariance
- Lock5Data
- Datasets for "Statistics: UnLocking the Power of Data"
- Lock5Data
- Datasets for "Statistics: UnLocking the Power of Data"
- Lock5withR
- Datasets for 'Statistics: Unlocking the Power of Data'
- locpol
- Kernel local polynomial regression
- lodGWAS
- Genome-Wide Association Analysis of a Biomarker Accounting for Limit of Detection
- loe
- Local Ordinal Embedding
- log10
- Decimal log plotting in two and three dimensions
- log4r
- A simple logging system for R, based on log4j.
- logbin
- Relative Risk Regression Using the Log-Binomial Model
- LogConcDEAD
- Log-concave Density Estimation in Arbitrary Dimensions
- logconcens
- Maximum likelihood estimation of a log-concave density based on censored data
- logcondens
- Estimate a Log-Concave Probability Density from Iid Observations
- logcondens.mode
- Compute MLE of Log-Concave Density on R with Fixed Mode, and Perform Inference for the Mode.
- logcondiscr
- Estimate a Log-Concave Probability Mass Function from Discrete i.i.d. Observations
- logconPH
- CoxPH Model with Log Concave Baseline Distribution
- logging
- R logging package
- logging
- R logging package
- LogicForest
- Logic Forest
- logicFS
- Identification of SNP Interactions
- LOGICOIL
- LOGICOIL: multi-state prediction of coiled-coil oligomeric state.
- LogicOpt
- Truth Table Logic Optimizer
- LogicReg
- Logic Regression
- logistf
- Firth's bias reduced logistic regression
- logistic4p
- Logistic Regression with Misclassification in Dependent Variables
- logisticDx
- Diagnostic tests for logistic regression models
- LogisticDx
- Diagnostic Tests for Models with a Binomial Response
- LogisticDx
- Diagnostic Tests for Models with a Binomial Response
- logisticPCA
- Binary Dimensionality Reduction
- LOGIT
- Functions, Data and Code for Binary and Binomial Data
- logitchoice
- Fitting l2-regularized logit choice models via generalized gradient descent
- LogitNet
- Infer network based on binary arrays using regularized logistic regression
- logitnorm
- Functions for the Logitnormal Distribution
- logitnorm
- Functions for the Logitnormal Distribution
- logitT
- logit-t Package
- loglognorm
- Double log normal distribution functions
- loglognorm
- Double log normal distribution functions
- logmult
- Log-Multiplicative Models, Including Association Models
- logopt
- Log optimal (universal) portfolios
- LogrankA
- Logrank Test for Aggregated Survival Data
- logspline
- Logspline Density Estimation Routines
- lokern
- Kernel Regression Smoothing with Local or Global Plug-in Bandwidth
- lokern
- Kernel Regression Smoothing with Local or Global Plug-in Bandwidth
- lol
- Lots Of Lasso
- LOLA
- Location overlap analysis for enrichment of genomic ranges
- lomb
- Lomb-Scargle Periodogram
- longCatEDA
- Package for Plotting Categorical Longitudinal and Time-Series Data
- longclust
- Model-Based Clustering and Classification for Longitudinal Data
- longitudinal
- Analysis of Multiple Time Course Data
- longitudinalData
- Longitudinal Data
- longmemo
- Statistics for Long-Memory Processes (Jan Beran) -- Data and Functions
- longpower
- Sample Size Calculations for Longitudinal Data
- longurl
- Expand Short URLs Using the 'URL-Expander' API
- loo
- Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian Models
- lookupTable
- Look-Up Tables using S4
- loop
- loop decomposition of weighted directed graphs for life cycle analysis, providing flexbile network plotting methods, and analyzing food chain properties in ecology
- LoopAnalyst
- A Collection of Tools to Conduct Levins' Loop Analysis
- loopr
- Uses an Archive to Amend Previous Stages of a Pipe using Current Output
- lordif
- Logistic Ordinal Regression Differential Item Functioning using IRT
- lorec
- LOw Rand and sparsE Covariance matrix estimation
- loret
- Logistic Regression Trees for Multinomial and Ordinal Responses
- LOST
- Missing Morphometric Data Simulation and Estimation
- LotkasLaw
- Runs Lotka's Law which is One of the Special Applications of Zipf's Law
- LowMACA
- LowMACA - Low frequency Mutation Analysis via Consensus Alignment
- lowmemtkmeans
- Low Memory Use Trimmed K-Means
- LowRankQP
- Low Rank Quadratic Programming
- lpbrim
- LP-BRIM Bipartite Modularity
- lpc
- Lassoed principal components for testing significance of features
- LPCM
- Local Principal Curve Methods
- LPE
- Methods for analyzing microarray data using Local Pooled Error (LPE) method
- LPEadj
- A correction of the local pooled error (LPE) method to replace the asymptotic variance adjustment with an unbiased adjustment based on sample size.
- lpint
- Local polynomial estimators of intensity function or its derivatives
- LPM
- Linear Parametric Models Applied to Hydrological Series
- lpme
- Local Polynomial Estimator in Measurement Error Models
- LPmerge
- Merging linkage maps by linear programming
- lpmodeler
- Modeler for linear programs (LP) and mixed integer linear programs (MILP)
- lpNet
- Linear Programming Model for Network Inference
- LPR
- Lasso and Partial Ridge
- lpridge
- Local Polynomial (Ridge) Regression
- lpridge
- Local Polynomial (Ridge) Regression
- LPS
- Linear Predictor Score, for Binary Inference from Multiple Continuous Variables
- lpSolve
- Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer Programs
- lpSolveAPI
- R Interface to 'lp_solve' Version 5.5.2.0
- lpSolveAPI
- R Interface to 'lp_solve' Version 5.5.2.0
- LPStimeSeries
- Learned Pattern Similarity and Representation for Time Series
- lpsymphony
- Symphony integer linear programming solver in R
- LPTime
- LP Nonparametric Approach to Non-Gaussian Non-Linear Time Series Modelling
- lqa
- Penalized Likelihood Inference for GLMs
- lqmm
- Linear Quantile Mixed Models
- lqmm
- Linear Quantile Mixed Models
- lqr
- Robust Linear Quantile Regression
- LRcontrast
- Dose Response Signal Detection under Model Uncertainty
- lrequire
- Sources an R "Module" with Caching & Encapsulation, Returning Exported Vars
- lrgs
- Linear Regression by Gibbs Sampling
- lrmest
- Different Types of Estimators to Deal with Multicollinearity
- LRTH
- A Likelihood Ratio Test Accounting for Genetic Heterogeneity
- LS2W
- Locally stationary two-dimensional wavelet process estimation scheme
- LS2Wstat
- A Multiscale Test of Spatial Stationarity for LS2W processes
- lsa
- Latent Semantic Analysis
- LSAfun
- Applied Latent Semantic Analysis (LSA) Functions
- LSAmitR
- DatensÃ¤tze und Ãœbungsmaterial zu 'Large-Scale Assessment mit R'
- lsbclust
- Least-Squares Bilinear Clustering for Three-Way Data
- LSC
- Local Statistical Complexity - Automatic Pattern Discovery in Spatio-Temporal Data
- LSD
- Lots of Superior Depictions
- LSDinterface
- Reading LSD Results (.res) Files
- lsdv
- Least square dummy variable regression
- lsei
- Solving Least Squares Problems under Equality/Inequality Constraints
- lsgl
- Linear Sparse Group Lasso
- lshorth
- The Length of the Shorth
- lshorth
- The Length of the Shorth
- lsl
- Latent Structure Learning
- lsmeans
- Least-Squares Means
- lsmeans
- Calculates the lsmeans and their variances for lm, gls,lme,mer,lmer and glmer models
- LSMonteCarlo
- American options pricing with Least Squares Monte Carlo method
- LSPFP
- Lysate and Secretome Peptide Feature Plotter
- lspls
- LS-PLS Models
- LSPM
- The Leverage Space Portfolio Modeler
- lsr
- Companion to "Learning Statistics with R"
- lss
- the accelerated failure time model to right censored data based on least-squares principle
- LSTS
- Locally Stationary Time Series
- ltbayes
- Simulation-Based Bayesian Inference for Latent Traits of Item Response Models
- ltm
- Latent Trait Models under IRT
- ltmle
- Longitudinal Targeted Maximum Likelihood Estimation
- LTPDvar
- LTPD and AOQL Plans for Acceptance Sampling Inspection by Variables
- LTR
- Perform LTR analysis on microarray data
- LTRCtrees
- Survival Trees to Fit Left-Truncated and Right-Censored Survival Data
- ltsa
- Linear Time Series Analysis
- ltsbase
- Ridge and Liu Estimates based on LTS (Least Trimmed Squares) Method
- ltsk
- Local Time Space Kriging
- lubridate
- Make Dealing with Dates a Little Easier
- luca
- Likelihood inference from case-control data Under Covariate Assumptions (LUCA)
- lucid
- Printing Floating Point Numbers in a Human-Friendly Format
- luck
- Generalized iLUCK models
- lucr
- Currency Formatting and Conversion
- lulcc
- Land Use Change Modelling in R
- lumendb
- Lumen Database API Client
- lumi
- BeadArray Specific Methods for Illumina Methylation and Expression Microarrays
- Luminescence
- Comprehensive Luminescence Dating Data Analysis
- lunar
- Lunar Phase & Distance, Seasons and Other Environmental Factors
- luzlogr
- Lightweight Logging for R Scripts
- lvm4net
- Latent Variable Models for Networks
- LVMMCOR
- A Latent Variable Model for Mixed Continuous and Ordinal Responses
- lvnet
- Latent Variable Network Modeling
- lvplot
- Letter Value 'Boxplots'
- LVSmiRNA
- LVS normalization for Agilent miRNA data
- LW1949
- An Automated Approach to Evaluating Dose-Effect Experiments Following Litchfield and Wilcoxon (1949)
- lxb
- Fast LXB File Reader
- lymphclon
- Accurate Estimation of Clonal Coincidences and Abundances from Biological Replicates
- LymphoSeq
- Analyze high-throughput sequencing of T and B cell receptors
- M3
- Reading M3 files
- M3D
- Identifies differentially methylated regions across testing groups
- M3Drop
- Michaelis-Menten Modelling of Dropouts in single-cell RNASeq
- M4comp
- Data from the M4 Time Series Forecasting Competition
- m4fe
- Models for Financial Economics
- maanova
- Tools for analyzing Micro Array experiments
- maboost
- Binary and Multiclass Boosting Algorithms
- MAc
- Meta-Analysis with Correlations
- macat
- MicroArray Chromosome Analysis Tool
- macc
- Mediation Analysis of Causality under Confounding
- machina
- Machina Time Series Generation and Backtesting
- machQA
- QA Machina Indicators
- macleish
- Retrieve Data from MacLeish Field Station
- MAclinical
- Class prediction based on microarray data and clinical parameters
- maCorrPlot
- Visualize artificial correlation in microarray data
- MAd
- Meta-Analysis with Mean Differences
- mada
- Meta-Analysis of Diagnostic Accuracy
- mada
- Meta-Analysis of Diagnostic Accuracy
- MADAM
- This package provides some basic methods for meta-analysis
- maddison
- Maddison Project Database
- made4
- Multivariate analysis of microarray data using ADE4
- madness
- Automatic Differentiation of Multivariate Operations
- madr
- Model Averaged Double Robust Estimation
- mads
- Multi-Analysis Distance Sampling
- MADSEQ
- Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data
- madsim
- A Flexible Microarray Data Simulation Model
- Maeswrap
- Wrapper Functions for MAESTRA/MAESPA
- mafs
- Multiple Automatic Forecast Selection
- maftools
- Summarize, Analyze and Visualize MAF files
- magclass
- Data Class and Tools for Handling Spatial-Temporal Data
- magic
- create and investigate magic squares
- magicaxis
- Pretty Scientific Plotting with Minor-Tick and Log Minor-Tick Support
- magick
- Advanced Image-Processing in R
- MagneticMap
- Magnetic Laplacian Matrix and Magnetic Eigenmap Visualization
- magrittr
- A Forward-Pipe Operator for R
- maGUI
- A Graphical User Interface for Microarray Data Analysis
- maigesPack
- Functions to handle cDNA microarray data, including several methods of data analysis
- Sending Email Notifications from R
- mailR
- A Utility to Send Emails from R
- MAINT.Data
- Model and Analyse Interval Data
- MAIT
- Statistical Analysis of Metabolomic Data
- makecdfenv
- CDF Environment Maker
- MakefileR
- Create 'Makefiles' Using R
- makeFlow
- Visualizing Sequential Classifications
- makeProject
- Creates an empty package framework for the LCFD format
- malani
- Machine Learning Assisted Network Inference
- MALDIquant
- Quantitative Analysis of Mass Spectrometry Data
- MALDIquantForeign
- Import/Export Routines for MALDIquant
- mallet
- A wrapper around the Java machine learning tool MALLET
- MAMA
- Meta-Analysis of MicroArray
- MAMI
- Model Averaging and Model Selection after Multiple Imputation
- MAMS
- Designing multi-arm multi-stage studies
- MAMSE
- Calculation of Minimum Averaged Mean Squared Error (MAMSE) weights.
- managelocalrepo
- Manage a CRAN-Style Local Repository
- MANCIE
- Matrix Analysis and Normalization by Concordant Information Enhancement
- mangoTraining
- Mango Solutions Training Datasets
- manhattanly
- Interactive Q-Q and Manhattan Plots Using 'plotly.js'
- manifestoR
- Access and Process Data and Documents of the Manifesto Project
- ManifoldOptim
- An R Interface to the ROPTLIB Library for Riemannian Manifold Optimization
- manipulate
- Interactive Plots for RStudio
- ManlyMix
- Manly Mixture Modeling and Model-Based Clustering
- MANOR
- CGH Micro-Array NORmalization
- MANOVA.RM
- Analysis of Multivariate Data and Repeated Measures Designs
- manta
- Microbial Assemblage Normalized Transcript Analysis
- MantelCorr
- Compute Mantel Cluster Correlations
- ManyTests
- Multiple Testing Procedures of Cox (2011) and Wong and Cox (2007)
- Map2NCBI
- Mapping Markers to the Nearest Genomic Feature
- MAPA
- Multiple Aggregation Prediction Algorithm
- mapdata
- Extra Map Databases
- mapfit
- A Tool for PH/MAP Parameter Estimation
- MapGAM
- Mapping Smoothed Effect Estimates from Individual-Level Data
- mAPKL
- A Hybrid Feature Selection method for gene expression data
- MAPLES
- Smoothed age profile estimation
- mapmisc
- Utilities for Producing Maps
- mapmisc
- Utilities for Producing Maps
- mapoland
- Maps of Poland for data visualization and graphics
- mapplots
- Data Visualisation on Maps
- mapproj
- Map Projections
- mapr
- Visualize Species Occurrence Data
- maPredictDSC
- Phenotype prediction using microarray data: approach of the best overall team in the IMPROVER Diagnostic Signature Challenge
- maps
- Draw Geographical Maps
- mapStats
- Geographic Display of Survey Data Statistics
- maptools
- Tools for Reading and Handling Spatial Objects
- maptools
- Tools for Reading and Handling Spatial Objects
- maptpx
- MAP Estimation of Topic Models
- maptree
- Mapping, pruning, and graphing tree models
- mapview
- Interactive Viewing of Spatial Objects in R
- mAr
- Multivariate AutoRegressive analysis
- MAR1
- Multivariate Autoregressive Modeling for Analysis of Community Time-Series Data
- mar1s
- Multiplicative AR(1) with Seasonal Processes
- march
- Markov Chains
- march
- Markov Chains
- marelac
- Tools for Aquatic Sciences
- marelac
- Tools for Aquatic Sciences
- marelacTeaching
- Datasets and tutorials for use in aquatic sciences
- MareyMap
- Estimation of Meiotic Recombination Rates Using Marey Maps
- marg
- Approximate marginal inference for regression-scale models
- marima
- Multivariate ARIMA and ARIMA-X Analysis
- markdown
- 'Markdown' Rendering for R
- marked
- Mark-Recapture Analysis for Survival and Abundance Estimation
- maRketSim
- Market simulator for R
- markmyassignment
- Automatic Marking of R Assignments
- markophylo
- Markov Chain Models for Phylogenetic Trees
- markovchain
- Easy Handling Discrete Time Markov Chains
- MarkowitzR
- Statistical Significance of the Markowitz Portfolio
- marl
- Multivariate Analysis Based on Relative Likelihoods
- marmap
- Import, Plot and Analyze Bathymetric and Topographic Data
- marqLevAlg
- An algorithm for least-squares curve fitting
- marray
- Exploratory analysis for two-color spotted microarray data
- MARSS
- Multivariate Autoregressive State-Space Modeling
- mas1343
- MAS1343: Introduction to statistical computing
- mas2316
- MAS2316: Introduction to regression and modelling
- mas3321
- Bayes normal linear model and basic MCMC
- maSAE
- Mandallaz' Model-Assisted Small Area Estimators
- maSigPro
- Significant Gene Expression Profile Differences in Time Course Gene Expression Data
- maskBAD
- Masking probes with binding affinity differences
- mason
- Build Data Structures for Common Statistical Analysis
- MASS
- Support Functions and Datasets for Venables and Ripley's MASS
- MassArray
- Analytical Tools for MassArray Data
- MassAtChance
- Implementation of the Mass at Chance models for subliminal priming accuracy data
- massiR
- massiR: MicroArray Sample Sex Identifier
- MassSpecWavelet
- Mass spectrum processing by wavelet-based algorithms
- MASSTIMATE
- Body Mass Estimation Equations for Vertebrates
- MAST
- Model-based Analysis of Single Cell Transcriptomics
- MasterBayes
- ML and MCMC Methods for Pedigree Reconstruction and Analysis
- mastermix
- Procedure for deconvolving, weight-evidence and database search using STR DNA mixtures
- MAT
- Multidimensional Adaptive Testing
- MATA
- Model-Averaged Tail Area Wald (MATA-Wald) Confidence Interval
- matchBox
- Utilities to compute, compare, and plot the agreement between ordered vectors of features (ie. distinct genomic experiments). The package includes Correspondence-At-the-TOP (CAT) analysis.
- MatchImage
- likelihood-based image id code
- Matching
- Multivariate and Propensity Score Matching with Balance Optimization
- MatchingFrontier
- Computation of the Balance - Sample Size Frontier in Matching Methods for Causal Inference
- matchingMarkets
- Analysis of Stable Matchings
- matchingMarkets
- Analysis of Stable Matchings
- matchingR
- Matching Algorithms in R and C++
- MatchIt
- MatchIt: Nonparametric Preprocessing for Parametric Casual Inference
- MatchItSE
- Calculates SE for Matched Samples from 'MatchIt'
- MatchLinReg
- Combining Matching and Linear Regression for Causal Inference
- matchMulti
- Optimal Multilevel Matching using a Network Algorithm
- matconv
- A Code Converter from the Matlab/Octave Language to R
- mateable
- Tools to Assess Mating Potential in Space and Time
- mathgraph
- Directed and undirected graphs
- maticce
- Mapping Transitions in Continuous Character Evolution
- matie
- Measuring Association and Testing Independence Efficiently
- matlab
- MATLAB emulation package
- matlabr
- An Interface for MATLAB using System Calls
- matlib
- Matrix Functions for Teaching and Learning Linear Algebra and Multivariate Statistics
- matpow
- matrix powers
- matR
- Metagenomics Analysis Tools for R
- Matrix
- Sparse and Dense Matrix Classes and Methods
- Matrix
- Sparse and Dense Matrix Classes and Methods
- matrixcalc
- Collection of functions for matrix calculations
- MatrixCorrelation
- Matrix Correlation Coefficients
- MatrixEQTL
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
- matrixLaplacian
- Normalized Laplacian Matrix and Laplacian Map
- MatrixLDA
- Penalized Matrix-Normal Linear Discriminant Analysis
- MatrixModels
- Modelling With Sparse and Dense Matrices
- MatrixModels
- Modelling with Sparse And Dense Matrices
- matrixpls
- Matrix-Based Partial Least Squares Estimation
- MatrixRider
- Obtain total affinity and occupancies for binding site matrices on a given sequence
- matrixStats
- Functions that Apply to Rows and Columns of Matrices (and to Vectors)
- matrixStats
- Methods that apply to rows and columns of a matrix
- Matrix.utils
- Data.frame-Like Operations on Sparse and Dense Matrix Objects
- matter
- A framework for rapid prototyping with binary data on disk
- MATTOOLS
- Modern Calibration Functions for the Modern Analog Technique (MAT)
- MAVIS
- Meta Analysis via Shiny
- MAVTgsa
- Three methods to identify differentially expressed gene sets, ordinary least square test, Multivariate Analysis Of Variance test with n contrasts and Random forest.
- MaXact
- Exact max-type Cochran-Armitage trend test(CATT)
- maxent
- Low-memory Multinomial Logistic Regression with Support for Text Classification
- MaxentVariableSelection
- Selecting the Best Set of Relevant Environmental Variables along with the Optimal Regularization Multiplier for Maxent Niche Modeling
- maxLik
- Maximum Likelihood Estimation and Related Tools
- maxLik
- Maximum Likelihood Estimation and Related Tools
- maxlike
- Model species distributions by estimating the probability of occurrence using presence-only data.
- maxnet
- Fitting 'Maxent' Species Distribution Models with 'glmnet'
- MaxPro
- Maximum Projection Designs
- MaxSkew
- Orthogonal Data Projections with Maximal Skewness
- maxstat
- Maximally Selected Rank Statistics
- MazamaSpatialUtils
- Mazama Science Spatial Data Download and Utility Functions
- MBA
- Multilevel B-spline Approximation
- MBAmethyl
- Model-based analysis of DNA methylation data
- MBASED
- Package containing functions for ASE analysis using Meta-analysis Based Allele-Specific Expression Detection
- mbbefd
- Maxwell Boltzmann Bose Einstein Fermi Dirac Distribution and Destruction Rate Modelling
- MBC
- Multivariate Bias Correction of Climate Model Outputs
- MBCB
- MBCB (Model-based Background Correction for Beadarray)
- MBCluster.Seq
- Model-Based Clustering for RNA-seq Data
- mbclusterwise
- Clusterwise Multiblock Analyses
- MBESS
- The MBESS R Package
- mbest
- Moment-Based Estimation for Hierarchical Models
- MBHdesign
- Spatial Designs for Ecological and Environmental Surveys
- MBI
- (M)ultiple-site (B)iodiversity (I)ndices Calculator
- mblm
- Median-Based Linear Models
- MBmca
- Nucleic Acid Melting Curve Analysis on Microbead Surfaces with R
- mbmdr
- Model Based Multifactor Dimensionality Reduction
- mboost
- Model-Based Boosting
- mBPCR
- Bayesian Piecewise Constant Regression for DNA copy number estimation
- MBSGS
- Multivariate Bayesian Sparse Group Selection with Spike and Slab
- MBTAr
- Access Data from the Massachusetts Bay Transit Authority (MBTA) Web API
- MBttest
- Multiple Beta t-Tests
- mBvs
- Multivariate Bayesian Variable Selection Method Exploiting Dependence among Outcomes
- mc2d
- Tools for Two-Dimensional Monte-Carlo Simulations
- mc2d
- Tools for Two-Dimensional Monte-Carlo Simulations
- MC2toPath
- Translates information from netcdf files with MC2 output into inter-PVT transitions.
- mcaGUI
- Microbial Community Analysis GUI
- MCAPS
- MCAPS data and results
- MCAvariants
- Multiple Correspondence Analysis Variants
- mcbiopi
- Matrix Computation Based Identification Of Prime Implicants
- mcc
- Moment Corrected Correlation
- mcclust
- Process an MCMC Sample of Clusterings
- MCDA
- Functions to Support the Multicriteria Decision Aiding Process
- MCDM
- Multi-Criteria Decision Making Methods for Crisp Data
- mcemGLM
- Maximum Likelihood Estimation for Generalized Linear Mixed Models
- mcga
- Machine Coded Genetic Algorithms for Real-Valued Optimization Problems
- mcgfa
- Mixtures of Contaminated Gaussian Factor Analyzers
- mcgibbsit
- Warnes and Raftery's MCGibbsit MCMC diagnostic
- mcglm
- Multivariate Covariance Generalized Linear Models
- mcGlobaloptim
- Global optimization using Monte Carlo and Quasi Monte Carlo simulation
- mcheatmaps
- Multiple matrices heatmap visualization
- MChtest
- Monte Carlo hypothesis tests with Sequential Stopping
- MCI
- Multiplicative Competitive Interaction (MCI) Model
- MCIBD
- Monte Carlo Identity-By-Descent Matrix Estimation
- mcIRT
- IRT models for multiple choice items (mcIRT)
- MCL
- Markov Cluster Algorithm
- mclcar
- Estimating Conditional Auto-Regressive (CAR) Models using Monte Carlo Likelihood Methods
- mcll
- Monte Carlo Local Likelihood Estimation
- mclogit
- Mixed Conditional Logit Models
- mclogit
- Mixed Conditional Logit
- mclust
- Gaussian Mixture Modelling for Model-Based Clustering, Classification, and Density Estimation
- mcmc
- Markov Chain Monte Carlo
- MCMC4Extremes
- Posterior Distribution of Extreme Value Models in R
- MCMCglmm
- MCMC Generalised Linear Mixed Models
- MCMC.OTU
- Bayesian Analysis of Multivariate Counts Data in DNA Metabarcoding and Ecology
- MCMCpack
- Markov Chain Monte Carlo (MCMC) Package
- mcmcplots
- Create Plots from MCMC Output
- MCMC.qpcr
- Bayesian Analysis of qRT-PCR Data
- mcmcse
- Monte Carlo Standard Errors for MCMC
- MCMCvis
- Tools to Visualize, Manipulate, and Summarize MCMC Output
- mco
- Multi criteria optimization algorithms and related functions
- mco
- Multiple Criteria Optimization Algorithms and Related Functions
- Mcomp
- Data from the M-competitions
- MConjoint
- Conjoint Analysis through Averaging of Multiple Analyses
- mcPAFit
- Estimating Preferential Attachment from a Single Network Snapshot by Markov Chain Monte Carlo
- MCPAN
- Multiple Comparisons Using Normal Approximation
- mcparallelDo
- A Simplified Interface for Running Commands on Parallel Processes
- MCPerm
- A Monte Carlo permutation method for multiple test correlation
- mcplR
- Multiple Cue Probability Learning in R
- MCPMod
- Design and Analysis of Dose-Finding Studies
- mcp.project
- Applies different False Discovery Rate controlling procedures
- mcprofile
- Testing Generalized Linear Hypotheses for Generalized Linear Model Parameters by Profile Deviance
- mcr
- Method Comparison Regression
- MCRestimate
- Misclassification error estimation with cross-validation
- MCS
- Model Confidence Set Procedure
- mcsm
- Functions for Monte Carlo Methods with R
- McSpatial
- Nonparametric spatial data analysis
- mcsSubset
- MCS: Variable Subset Selection in Linear Regression
- mctest
- Multicollinearity Diagnostic Measures
- MCTM
- Markov Chains Transition Matrices
- md
- Selecting Bandwidth for Kernel Density Estimator with Minimum Distance Method
- mda
- Mixture and Flexible Discriminant Analysis
- mdatools
- Multivariate Data Analysis for Chemometrics
- mded
- Measuring the Difference Between Two Empirical Distributions
- mdgsa
- Multi Dimensional Gene Set Analysis.
- mdhglm
- Multivariate Double Hierarchical Generalized Linear Models
- MDimNormn
- Multi-Dimensional MA Normalization for Plate Effect
- MDM
- Multinomial Diversity Model
- MDMR
- Multivariate Distance Matrix Regression
- MDP
- Markov Decision Processes (MDPs) in R
- mdpeer
- Graph-Constrained Regression with Enhanced Regularization Parameters Selection
- MDplot
- Visualising Molecular Dynamics Analyses
- MDPtoolbox
- Markov Decision Processes toolbox
- mdqc
- Mahalanobis Distance Quality Control for microarrays
- MDR
- Detect gene-gene interactions using multifactor dimensionality reduction
- mdscore
- Improved Score Tests for Generalized Linear Models
- mdsdt
- Functions for Analysis of Data with General Recognition Theory
- MDSGUI
- A GUI for interactive MDS in R
- MDSGUI
- A GUI for interactive MDS in R
- mdsr
- Complement to 'Modern Data Science with R'
- MEAL
- Perform methylation analysis
- MeanShift
- Clustering via the Mean Shift Algorithm
- meanShiftR
- A Computationally Efficient Mean Shift Implementation
- MeasurementError.cor
- Measurement Error model estimate for correlation coefficient
- measurements
- Tools for Units of Measurement
- measuRing
- Detection and Control of Tree-Ring Widths on Scanned Image Sections
- meboot
- Maximum Entropy Bootstrap for Time Series
- MEclustnet
- Fits the Mixture of Experts Latent Position Cluster Model to Network Data
- mederrRank
- Bayesian Methods for Identifying the Most Harmful Medication Errors
- medfate
- Mediterranean Forest Simulation
- medflex
- Flexible Mediation Analysis Using Natural Effect Models
- MediaK
- Calculate MeDiA_K Distance
- Mediana
- Clinical Trial Simulations
- mediation
- Causal Mediation Analysis
- medicalrisk
- Medical Risk and Comorbidity Tools for ICD-9-CM Data
- medicare
- Tools for Obtaining and Cleaning Medicare Public Use Files
- MeDiChI
- MeDiChI ChIP-chip deconvolution library
- MEDIPS
- DNA IP-seq data analysis
- MEDME
- Modelling Experimental Data from MeDIP Enrichment
- MedOr
- Median Ordering Statistical R package
- medSTC
- A max-margin supervised Sparse Topical Coding Model
- MEET
- MEET: Motif Elements Estimation Toolkit
- MEET
- MEET: Motif Elements Estimation Toolkit
- mefa
- Multivariate Data Handling in Ecology and Biogeography
- mefa
- Multivariate Data Handling in Ecology and Biogeography
- mefa4
- Multivariate Data Handling with S4 Classes and Sparse Matrices
- mefa4
- Multivariate Data Handling with S4 Classes and Sparse Matrices
- megaptera
- MEGAPhylogeny Techniques in R
- MEGENA
- Multiscale Clustering of Geometrical Network
- meifly
- Interactive model exploration using GGobi
- MEIGOR
- MEIGO - MEtaheuristics for bIoinformatics Global Optimization
- MELON
- Methylation Enriched LOci Normalization (MELON) for genome-wide DNA methylation experiments
- melviewr
- View and Classify MELODIC Output for ICA+FIX
- mem
- Moving Epidemic Method R Package.
- memgene
- Spatial pattern detection in genetic distance data
- memgene
- Spatial pattern detection in genetic distance data using Moran's Eigenvector Maps
- memisc
- Tools for Management of Survey Data and the Presentation of Analysis Results
- memisc
- Tools for Management of Survey Data and the Presentation of Analysis Results
- memo
- In-Memory Caching for Repeated Computations
- memoise
- Memoisation of Functions
- MEMSS
- Data sets from Mixed-effects Models in S
- MEMSS
- Data sets from Mixed-effects Models in S
- memuse
- Memory Estimation Utilities
- MendelianRandomization
- Mendelian Randomization Package
- MenuCollection
- Collection of Configurable GTK+ Menus
- MergeGUI
- A GUI for Merging Datasets in R
- MergeMaid
- Merge Maid
- Mergeomics
- Integrative network analysis of omics data
- merror
- Accuracy and Precision of Measurements
- merTools
- Tools for Analyzing Mixed Effect Regression Models
- MeSHDbi
- DBI to construct MeSH-related package from sqlite file
- meshes
- MeSH Enrichment and Semantic analyses
- meshr
- Tools for conducting enrichment analysis of MeSH
- MeSHSim
- MeSH(Medical Subject Headings) Semantic Similarity Measures
- MESS
- Miscellaneous Esoteric Statistical Scripts
- messageQueue
- Allow R to communicate with message queues
- messina
- Single-gene classifiers and outlier-resistant detection of differential expression for two-group and survival problems.
- meta
- General Package for Meta-Analysis
- meta4diag
- Meta-Analysis for Diagnostic Test Studies
- meta4diag
- Meta-Analysis for Diagnostic Test Studies
- MetaAnalyser
- An Interactive Visualisation of Meta-Analysis as a Physical Weighing Machine
- metaArray
- Integration of Microarray Data for Meta-analysis
- Metab
- Metab: An R Package for a High-Throughput Analysis of Metabolomics Data Generated by GC-MS.
- MetABEL
- Meta-analysis of genome-wide SNP association results
- MetABEL
- Meta-analysis of genome-wide SNP association results
- MetabolAnalyze
- Probabilistic latent variable models for metabolomic data.
- metabolomics
- Analysis of Metabolomics Data
- metabomxtr
- A package to run mixture models for truncated metabolomics data with normal or lognormal distributions
- MetaboQC
- Normalize Metabolomic Data using QC Signal
- MetaboSignal
- MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways
- metaCCA
- Summary Statistics-Based Multivariate Meta-Analysis of Genome-Wide Association Studies Using Canonical Correlation Analysis
- metacoder
- Tools for Parsing, Manipulating, and Graphing Hierarchical Data
- metacom
- Analysis of the 'Elements of Metacommunity Structure'
- metacor
- Meta-analysis of correlation coefficients
- MetaCycle
- Evaluate Periodicity in Large Scale Data
- MetaDE
- MetaDE: Microarray meta-analysis for differentially expressed gene detection
- metafolio
- Metapopulation simulations for conserving salmon through portfolio optimization
- metafor
- Meta-Analysis Package for R
- metafuse
- Fused Lasso Approach in Regression Coefficient Clustering
- metagear
- Comprehensive Research Synthesis Tools for Systematic Reviews and Meta-Analysis
- metagen
- Inference in Meta Analysis and Meta Regression
- metagene
- A package to produce metagene plots
- metagenomeFeatures
- Exploration of marker-gene sequence taxonomic annotations
- metagenomeSeq
- Statistical analysis for sparse high-throughput sequencing
- metahdep
- Hierarchical Dependence in Meta-Analysis
- metaheur
- Metaheuristic Optimization Framework for Preprocessing Combinations
- MetaheuristicFPA
- An Implementation of Flower Pollination Algorithm in R
- MetaIntegrator
- Meta-Analysis of Gene Expression Data
- MetaLandSim
- Landscape and Range Expansion Simulation
- metaLik
- Likelihood Inference in Meta-Analysis and Meta-Regression Models
- metaMA
- Meta-analysis for MicroArrays
- metamisc
- Diagnostic and prognostic meta analysis (metamisc)
- metaMix
- Bayesian Mixture Analysis for Metagenomic Community Profiling
- metaMS
- MS-based metabolomics annotation pipeline
- metansue
- Meta-Analysis of Studies with Non Statistically-Significant Unreported Effects
- metap
- Meta-Analysis of Significance Values
- MetaPath
- Perform the Meta-Analysis for Pathway Enrichment Analysis (MAPE)
- MetaPCA
- MetaPCA: Meta-analysis in the Dimension Reduction of Genomic data
- metaplotr
- Creates CrossHairs Plots for Meta-Analyses
- metaplus
- Robust Meta-Analysis and Meta-Regression
- metapop
- Metapopulations and Incidence Functions
- MetaQC
- MetaQC: Objective Quality Control and Inclusion/Exclusion Criteria for Genomic Meta-Analysis
- metaRNASeq
- Meta-analysis of RNA-seq data
- metaRNASeq
- Meta-analysis of RNA-seq data
- metaSEM
- Meta-Analysis using Structural Equation Modeling
- metasens
- Advanced Statistical Methods to Model and Adjust for Bias in Meta-Analysis
- metaSeq
- Meta-analysis of RNA-Seq count data in multiple studies
- metaseqR
- An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.
- MetaSKAT
- Meta Analysis for SNP-Set (Sequence) Kernel Association Test
- metatest
- Fit and test metaregression models
- metatest
- Fit and test metaregression models
- Metatron
- Meta-analysis for Classification Data and Correction to Imperfect Reference
- metaX
- An R package for metabolomic data analysis
- MetCirc
- MetCirc - a workflow to analyse and visualise metabolomics data
- meteo
- Spatio-Temporal Analysis and Mapping of Meteorological Observations
- meteo
- Spatio-Temporal Analysis and Mapping of Meteorological Observations
- meteoForecast
- Numerical Weather Predictions
- meteogRam
- Tools for plotting meteograms
- meteoland
- Landscape Meteorology Tools
- meteR
- Fitting and Plotting Tools for the Maximum Entropy Theory of Ecology (METE)
- MetFns
- Analysis of Visual Meteor Data
- Meth27QC
- Meth27QC: sample quality analysis, and sample control analysis
- MethComp
- Analysis of Method Comparison studies
- MethComp
- Functions for Analysis of Agreement in Method Comparison Studies
- MethodCompare
- Bias and Precision Plots to Compare Two Measurements with Possibly Heteroscedastic Measurement Errors
- MethPed
- A DNA methylation classifier tool for the identification of pediatric brain tumor subtypes
- Methplot
- Visualize the methylation patterns
- MethTargetedNGS
- Perform Methylation Analysis on Next Generation Sequencing Data
- methVisual
- Methods for visualization and statistics on DNA methylation data
- methyAnalysis
- DNA methylation data analysis and visualization
- MethyBayes
- Full Bayesian Partition Model for Identifying Differentially Methylated Loci
- MethylAid
- Visual and interactive quality control of large Illumina DNA Methylation array data sets
- MethylCapSig
- Detection of Differentially Methylated Regions using MethylCap-Seq Data
- methylKit
- DNA methylation analysis from high-throughput bisulfite sequencing results
- MethylMix
- MethylMix: Identifying methylation driven cancer genes.
- methylMnM
- detect different methylation level (DMR)
- methylPipe
- Base resolution DNA methylation data analysis
- MethylSeekR
- Segmentation of Bis-seq data
- methylumi
- Handle Illumina methylation data
- metlab
- The Metrics Laboratory
- MetNorm
- Statistical Methods for Normalizing Metabolomics Data
- MetProc
- Separate Metabolites into Likely Measurement Artifacts and True Metabolites
- Metrics
- Evaluation metrics for machine learning
- metricsgraphics
- Create Interactive Charts with the JavaScript 'MetricsGraphics' Library
- metricTester
- Test Metric and Null Model Statistical Performance
- metRology
- Support for Metrological Applications
- metRology
- Support for Metrological Applications
- metrumrg
- Pharmacometric Tools for Data Preparation, Modeling, Simulation, and Reporting
- mets
- Analysis of Multivariate Event Times
- mets
- Analysis of Multivariate Event Times
- MetSizeR
- GUI Tool for Estimating Sample Sizes for Metabolomic Experiments
- MetStaT
- Statistical metabolomics tools
- mev
- Multivariate Extreme Value Distributions
- mewAvg
- A Fixed Memeory Moving Expanding Window Average
- mexhaz
- Mixed Effect Excess Hazard Models
- MExPosition
- Multi-table ExPosition
- MF
- Mitigated Fraction
- MFAg
- Multiple Factor Analysis (MFA)
- MFHD
- Multivariate Functional Halfspace Depth
- mFilter
- Miscellaneous time series filters
- mfp
- Multivariable Fractional Polynomials
- MFPCA
- Multivariate Functional Principal Component Analysis for Data Observed on Different Dimensional Domains
- MFTSR
- Modelling Financial Time Series with R
- MfUSampler
- Multivariate-from-Univariate (MfU) MCMC Sampler
- Mfuzz
- Soft clustering of time series gene expression data
- mfx
- Marginal Effects, Odds Ratios and Incidence Rate Ratios for GLMs
- mgarchBEKK
- Simulating, Estimating and Diagnosing MGARCH (BEKK and mGJR) Processes
- mgcv
- Mixed GAM Computation Vehicle with GCV/AIC/REML Smoothness Estimation
- MGFM
- Marker Gene Finder in Microarray gene expression data
- MGFR
- Marker Gene Finder in RNA-seq data
- MGGM
- Structural Pursuit Over Multiple Undirected Graphs
- MGL
- Module Graphical Lasso
- MGLM
- Multivariate Response Generalized Linear Models
- mglmn
- Model Averaging for Multivariate GLM with Null Models
- mgm
- Estimating Time-Varying Mixed Graphical Models
- mgpd
- mgpd: Functions for multivariate generalized Pareto distribution (MGPD of Type II)
- mgraph
- Graphing map attributes and non-map variables in R
- MGRASTer
- API Client for the MG-RAST Server of the US DOE KBase
- mgsa
- Model-based gene set analysis
- MGSDA
- Multi-Group Sparse Discriminant Analysis
- mGSZ
- Gene set analysis based on GSZ-scoring function and asymptotic p-value
- mGSZ
- Gene set analysis based on GSZ-scoring function and asymptotic p-value
- MHadaptive
- General Markov Chain Monte Carlo for Bayesian Inference using adaptive Metropolis-Hastings sampling
- mhde
- Minimum Hellinger Distance Test for Normality
- mHG
- Minimum-Hypergeometric Test
- mhsmm
- Inference for Hidden Markov and Semi-Markov Models
- mht
- Multiple Hypothesis Testing for Variable Selection in High-Dimensional Linear Models
- mhtboot
- Multiple Hypothesis Test Based on Distribution of p Values
- MHTdiscrete
- Multiple Hypotheses Testing for Discrete Data
- MHTrajectoryR
- Bayesian Model Selection in Logistic Regression for the Detection of Adverse Drug Reactions
- MHTrajectoryR
- Bayesian Model Selection in Logistic Regression for the Detection of Adverse Drug Reactions
- mhurdle
- Multiple Hurdle Tobit Models
- mhurdle
- Multiple Hurdle Tobit Models
- mi
- Missing Data Imputation and Model Checking
- mi
- Missing Data Imputation and Model Checking
- MIAmaxent
- Maxent Distribution Model Selection
- mice
- Multivariate Imputation by Chained Equations
- miceadds
- Some Additional Multiple Imputation Functions, Especially for 'mice'
- micEcon
- Microeconomic Analysis and Modelling
- micEcon
- Microeconomic Analysis and Modelling
- micEconAids
- Demand Analysis with the Almost Ideal Demand System (AIDS)
- micEconAids
- Demand Analysis with the Almost Ideal Demand System (AIDS)
- micEconCES
- Analysis with the Constant Elasticity of Substitution (CES) function
- micEconCES
- Analysis with the Constant Elasticity of Substitution (CES) function
- micEconDist
- Microeconomic Production Analysis with Distance Functions
- micEconNP
- Microeconomic Analysis with Non-Parametric Methods
- micEconSNQP
- Symmetric Normalized Quadratic Profit Function
- micEconSNQP
- Symmetric Normalized Quadratic Profit Function
- MiChip
- MiChip Parsing and Summarizing Functions
- micompr
- Multivariate Independent Comparison of Observations
- miCoPTCM
- Promotion Time Cure Model with Mis-Measured Covariates
- microbats
- An Implementation of Bat Algorithm in R
- microbenchmark
- Accurate Timing Functions
- microclass
- Methods for Taxonomic Classification of Prokaryotes
- microcontax
- The ConTax Data Package
- MicroDatosEs
- Utilities for Official Spanish Microdata
- micromap
- Linked Micromap Plots
- micromapST
- Linked Micromap Plots for General U. S. Geographic Areas
- micropan
- Microbial Pan-Genome Analysis
- microplot
- Use R Graphics Files as Microplots (Sparklines) in Tables in LaTeX or HTML Files, and Output Data.frames to Org-Mode
- microRNA
- Data and functions for dealing with microRNAs
- microseq
- Basic Biological Sequence Analysis
- MicroStrategyR
- MicroStrategyR Package
- MicSim
- Performing Continuous-Time Microsimulation
- midasr
- Mixed Data Sampling Regression
- midastouch
- Multiple Imputation by Distance Aided Donor Selection
- MIDN
- Nearly Exact Sample Size Calculation for Exact Powerful Nonrandomized Tests for Differences Between Binomial Proportions
- midrangeMCP
- Multiple Comparisons Procedures Based on Studentized Midrange and Range Distributions
- mif2
- MIF2 algorithm development package
- MigClim
- Implementing dispersal into species distribution models
- migest
- Methods for the Indirect Estimation of Bilateral Migration
- migration.indices
- Migration indices
- migui
- Graphical User Interface of the mi Package
- migui
- Graphical User Interface to the 'mi' Package
- MIICD
- Multiple Imputation for Interval Censored Data
- MIIVsem
- Model Implied Instrumental Variable (MIIV) Estimation of Structural Equation Models
- MILC
- MIcrosimulation Lung Cancer (MILC) model
- milonga
- Multiple Imputation for Multivariate Binary Outcome
- milr
- Multiple-Instance Logistic Regression with LASSO Penalty
- mime
- Map Filenames to MIME Types
- MImix
- Mixture summary method for multiple imputation
- MIMOSA
- Mixture Models for Single-Cell Assays
- MindOnStats
- Data sets included in Utts and Heckard's Mind on Statistics
- MineICA
- Analysis of an ICA decomposition obtained on genomics data
- minerva
- Maximal Information-Based Nonparametric Exploration R Package for Variable Analysis
- minet
- Mutual Information NETworks
- Miney
- Implementation of the Well-Known Game to Clear Bombs from a Given Field (Matrix)
- minfi
- Analyze Illumina Infinium DNA methylation arrays
- miniCRAN
- Create a Mini Version of CRAN Containing Only Selected Packages
- miniGUI
- tktcl quick and simple function GUI.
- minimap
- Create Tile Grid Maps
- minimax
- Minimax distribution family
- minimaxdesign
- Minimax and Minimax Projection Designs
- minimist
- Parse Argument Options
- MinimumDistance
- A Package for De Novo CNV Detection in Case-Parent Trios
- miniUI
- Shiny UI Widgets for Small Screens
- minpack.lm
- R Interface to the Levenberg-Marquardt Nonlinear Least-Squares Algorithm Found in MINPACK, Plus Support for Bounds
- minPtest
- Gene region-level testing procedure for SNP data, using the min P test resampling approach
- minqa
- Derivative-free optimization algorithms by quadratic approximation
- minqa
- Derivative-free optimization algorithms by quadratic approximation
- minque
- An R Package for Linear Mixed Model Analyses
- MInt
- Learn Direct Interaction Networks
- minval
- MINimal VALidation for Stoichiometric Reactions
- minxent
- Entropy Optimization Distributions
- mipfp
- Multidimensional Iterative Proportional Fitting and Alternative Models
- MIPHENO
- Mutant Identification through Probabilistic High throughput Enabled NOrmalization
- MiPP
- Misclassification Penalized Posterior Classification
- miRada
- MicroRNA Microarray Data Analysis
- MiRaGE
- MiRNA Ranking by Gene Expression
- MiRAnorm
- Adaptive Normalization for miRNA Data
- miRcomp
- Tools to assess and compare miRNA expression estimatation methods
- mirIntegrator
- Integrating microRNA expression into signaling pathways for pathway analysis
- miRLAB
- Dry lab for exploring miRNA-mRNA relationships
- miRNAmeConverter
- Convert miRNA Names to Different miRBase Versions
- miRNApath
- miRNApath: Pathway Enrichment for miRNA Expression Data
- miRNAtap
- miRNAtap: microRNA Targets - Aggregated Predictions
- MiRSEA
- 'MicroRNA' Set Enrichment Analysis
- Mirsynergy
- Mirsynergy
- mirt
- Multidimensional Item Response Theory
- mirtCAT
- Computerized Adaptive Testing with Multidimensional Item Response Theory
- miRtest
- Combined miRNA- and mRNA-Testing
- miRtest
- combined miRNA- and mRNA-testing
- misc3d
- Miscellaneous 3D Plots
- miscF
- Miscellaneous Functions
- miscFuncs
- Miscellaneous Useful Functions Including LaTeX Tables, Kalman Filtering and Development Tools
- misclassGLM
- Computation of Generalized Linear Models with Misclassified Covariates Using Side Information
- miscor
- Miscellaneous Functions for the Correlation Coefficient
- miscset
- Miscellaneous Tools Set
- miscTools
- Miscellaneous Tools and Utilities
- miscTools
- Miscellaneous Tools and Utilities
- mise
- Clears the Workspace (Mise en Place)
- MiSPU
- Microbiome Based Sum of Powered Score (MiSPU) Tests
- misreport
- Statistical Analysis of Misreporting on Sensitive Survey Questions
- missDeaths
- 'Correctly Analyse Disease Recurrence with Missing at Risk Information using Population Mortality'
- missForest
- Nonparametric Missing Value Imputation using Random Forest
- MissingDataGUI
- A GUI for Missing Data Exploration
- missMDA
- Handling missing values with/in multivariate data analysis (principal component methods)
- missMDA
- Handling Missing Values with Multivariate Data Analysis
- MissMech
- Testing Homoscedasticity, Multivariate Normality, and Missing Completely at Random
- missMethyl
- Analysing Illumina HumanMethylation BeadChip Data
- MiST
- Mixed effects Score Test for continuous outcomes
- mistat
- Data Sets, Functions and Examples from the Book: "Modern Industrial Statistics" by Kenett, Zacks and Amberti
- mistral
- Methods in Structural Reliability Analysis
- MitISEM
- Mixture of Student t Distributions using Importance Sampling and Expectation Maximization
- mitml
- Tools for Multiple Imputation in Multilevel Modeling
- mitoODE
- Implementation of the differential equation model described in "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"
- mitools
- Tools for multiple imputation of missing data
- mitools
- Tools for multiple imputation of missing data
- mix
- Estimation/Multiple Imputation for Mixed Categorical and Continuous Data
- mixAK
- Multivariate Normal Mixture Models and Mixtures of Generalized Linear Mixed Models Including Model Based Clustering
- MixAll
- Clustering using Mixture Models
- MixAll
- Clustering using Mixture Models
- mixcat
- Mixed effects cumulative link and logistic regression models
- MixCluster
- MixCluster performs the clustering of mixed-type data sets (data sets with different natures of variables) with missing values.
- mixdist
- Finite Mixture Distribution Models
- MixedDataImpute
- Missing Data Imputation for Continuous and Categorical Data using Nonparametric Bayesian Joint Models
- mixedMem
- Tools for Discrete Multivariate Mixed Membership Models
- MixedPoisson
- Mixed Poisson Models
- mixedsde
- Estimation Methods for Stochastic Differential Mixed Effects Models
- MixedTS
- Mixed Tempered Stable Distribution
- MixedTS
- Mixed Tempered Stable Distribution
- mixer
- Random graph clustering
- mixexp
- Design and Analysis of Mixture Experiments
- mixexp
- Design and Analysis of Mixture Experiments
- MIXFIM
- Evaluation of the FIM in NLMEMs using MCMC
- MixGHD
- Model Based Clustering, Classification and Discriminant Analysis Using the Mixture of Generalized Hyperbolic Distributions
- MixGHD
- Model Based Clustering, Classification and Discriminant Analysis Using the Mixture of Generalized Hyperbolic Distributions
- mixlm
- Mixed Model ANOVA and Statistics for Education
- mixlm
- Mixed model ANOVA for lm and lmer
- MixMAP
- Implements the MixMAP Algorithm
- mixOmics
- Omics Data Integration Project
- mixor
- Mixed-Effects Ordinal Regression Analysis
- mixpack
- Tools to Work with Mixture Components
- mixPHM
- Mixtures of Proportional Hazard Models
- mixPHM
- Mixtures of proportional hazard models.
- mixRasch
- Mixture Rasch Models with JMLE
- mixreg
- Functions to fit mixtures of regressions.
- MixRF
- A Random-Forest-Based Approach for Imputing Clustered Incomplete Data
- mixsep
- Forensic Genetics DNA Mixture Separation
- MixSIAR
- Bayesian Mixing Models in R
- MixSim
- Simulating Data to Study Performance of Clustering Algorithms
- mixsmsn
- Fitting Finite Mixture of Scale Mixture of Skew-Normal Distributions
- mixstock
- functions for mixed stock analysis
- mixtNB
- DE Analysis of RNA-Seq Data by Mixtures of NB
- mixtools
- Tools for Analyzing Finite Mixture Models
- mixtox
- Curve Fitting and Mixture Toxicity Assessment
- mixture
- Mixture Models for Clustering and Classification
- MixtureDistribution
- Mixture Distribution
- MixtureInf
- Inference for Finite Mixture Models
- mixvarselect
- Mixture of expert modelling with variable selection using penalization
- mizer
- Multi-species sIZE spectrum modelling in R
- mkde
- 2D and 3D movement-based kernel density estimates (MKDEs).
- mkin
- Kinetic Evaluation of Chemical Degradation Data
- mkin
- Kinetic Evaluation of Chemical Degradation Data
- MKLE
- Maximum kernel likelihood estimation.
- MKmisc
- Miscellaneous Functions from M. Kohl
- mkssd
- Efficient multi-level k-circulant supersaturated designs
- mlbench
- Machine Learning Benchmark Problems
- MLCIRTwithin
- Latent Class Item Response Theory (LC-IRT) Models under Within-Item Multidimensionality
- MLCM
- Maximum Likelihood Conjoint Measurement
- mlDNA
- Machine Learning-based Differential Network Analysis of Transcriptome Data
- mldr
- Exploratory Data Analysis and Manipulation of Multi-Label Data Sets
- mldr.datasets
- R Ultimate Multilabel Dataset Repository
- MLDS
- Maximum Likelihood Difference Scaling
- mlearning
- Machine learning algorithms with unified interface and confusion matrices
- mlearning
- Machine learning algorithms with unified interface and confusion matrices
- MLEcens
- Computation of the MLE for bivariate (interval) censored data
- mlegp
- Maximum Likelihood Estimates of Gaussian Processes
- mleur
- Maximum likelihood unit root test
- mlfm
- Semiparametric multilevel frailty models, estimated via EMPL method
- MLGL
- Multi-Layer Goup-Lasso
- mlgt
- Multi-Locus Geno-Typing
- mlica2
- Independent Component Analysis using Maximum Likelihood
- MLInterfaces
- Uniform interfaces to R machine learning procedures for data in Bioconductor containers
- mlma
- Multilevel Mediation Analysis
- mlmc
- Multi-Level Monte Carlo
- MLmetrics
- Machine Learning Evaluation Metrics
- mlmmm
- ML estimation under multivariate linear mixed models with missing values
- mlmRev
- Examples from Multilevel Modelling Software Review
- mlmRev
- Examples from Multilevel Modelling Software Review
- mlogit
- multinomial logit model
- mlogit
- multinomial logit model
- mlogitBMA
- Bayesian Model Averaging for Multinomial Logit Models
- MLP
- MLP
- mlPhaser
- Multi-Locus Haplotype Phasing
- MLPUGS
- Multi-Label Prediction Using Gibbs Sampling (and Classifier Chains)
- mlr
- Machine Learning in R
- MLRMPA
- A package for Multilinear Regression Model Population Analysis
- MLSeq
- Machine learning interface for RNA-Seq data
- mlsjunkgen
- Use the MLS Junk Generator Algorithm to Generate a Stream of Pseudo-Random Numbers
- mlt
- Most Likely Transformations
- mlt
- Most Likely Transformations
- mlt.docreg
- Most Likely Transformations: Documentation and Regression Tests
- mltools
- Machine Learning Tools
- mlVAR
- Multi-Level Vector Autoregression
- mlxR
- Simulation of Longitudinal Data
- MM
- The multiplicative multinomial distribution
- MM2S
- Single-Sample Classifier of Medulloblastoma Subtypes for Medulloblastoma Patient Samples, Mouse Models, and Cell Lines
- MM2Sdata
- Gene Expression Datasets for the 'MM2S' Package
- mma
- Multiple Mediation Analysis
- mmand
- Mathematical Morphology in Any Number of Dimensions
- mmap
- Map Pages of Memory
- mmap
- Map Pages of Memory
- mmc
- Multivariate Measurement Error Correction
- mmcm
- Modified Maximum Contrast Method
- MMDai
- Multivariate Multinomial Distribution Approximation and Imputation for Incomplete Data
- MMDiff
- Statistical Testing for ChIP-Seq data sets
- MMDiff2
- Statistical Testing for ChIP-Seq data sets
- mmds
- Mixture Model Distance Sampling (mmds)
- mme
- Multinomial Mixed Effects Models
- mmeln
- Estimation of Multinormal Mixture Distribution
- mmeta
- Multivariate Meta-Analysis
- MmgraphR
- Graphing for Markov Models and Hidden Markov Models
- mmm
- an R package for analyzing multivariate longitudinal data with multivariate marginal models
- mmm2
- Multivariate marginal models with shared regression parameters
- MMMS
- Multi-Marker Molecular Signature for Treatment-specific Subgroup Identification
- mmnet
- A metagenomic pipeline for systems biology
- mmod
- Modern Measures of Population Differentiation
- MmPalateMiRNA
- Murine Palate miRNA Expression Analysis
- mmpf
- Monte-Carlo Methods for Prediction Functions
- mmpp
- Various Similarity and Distance Metrics for Marked Point Processes
- mmppr
- Markov Modulated Poisson Process for Unsupervised Event Detection in Time Series of Counts
- MMS
- Fixed effects Selection in Linear Mixed Models
- mmSAR
- mmSAR is an R package for the modelling of the Species-Area Relationship (SAR).
- mmtfa
- Model-Based Clustering and Classification with Mixtures of Modified t Factor Analyzers
- MMWRweek
- Convert Dates to MMWR Day, Week, and Year
- mnbem
- Matrix Normal Block EM
- mnlogit
- Multinomial Logit Model
- MNM
- Multivariate Nonparametric Methods. An Approach Based on Spatial Signs and Ranks
- mnormpow
- Multivariate Normal Distributions with Power Integrand
- mnormt
- The Multivariate Normal and t Distributions
- MNP
- R Package for Fitting the Multinomial Probit Model
- MNS
- Mixed Neighbourhood Selection
- Mobilize
- Mobilize plots and functions
- MOCCA
- Multi-objective optimization for collecting cluster alternatives
- mockery
- Mocking Library for R
- mod09nrt
- Extraction of Bands from MODIS Surface Reflectance Product MOD09 NRT
- MODA
- MODA: MOdule Differential Analysis for weighted gene co-expression network
- Modalclust
- Hierarchical Modal Clustering
- modeest
- Mode Estimation
- modehunt
- Multiscale Analysis for Density Functions
- ModelDataComp
- Model-Data Comparison
- Modeler
- Classes and Methods for Training and Using Binary Prediction Models
- modelfree
- Model-free estimation of a psychometric function
- modelfree
- Model-free estimation of a psychometric function
- ModelGood
- Validation of risk prediction models
- ModelGood
- Validation of risk prediction models
- ModelMap
- Modeling and Map Production using Random Forest and Stochastic Gradient Boosting
- ModelMetrics
- Rapid Calculation of Model Metrics
- modelObj
- A Model Object Framework for Regression Analysis
- modelObj
- A Model Object Framework for Regression Analysis
- modelr
- Modelling Functions that Work with the Pipe
- modeltools
- Tools and Classes for Statistical Models
- modes
- Find the Modes and Assess the Modality of Complex and Mixture Distributions, Especially with Big Datasets
- modEvA
- Model Evaluation and Analysis
- modEvA
- Model Evaluation and Analysis
- modi
- Multivariate outlier detection and imputation for incomplete survey data
- MODIS
- MODIS Acquisition and Processing
- modiscloud
- R tools for processing Level 2 Cloud Mask products from MODIS
- modiscloud
- R tools for processing Level 2 Cloud Mask products from MODIS
- MODISTools
- MODIS Subsetting Tools
- modisws
- Interface to the web processing service for MODIS data
- modMax
- Community Structure Detection via Modularity Maximization
- modQR
- Multiple-Output Directional Quantile Regression
- modTempEff
- Modelling temperature effects using time series data
- moduleColor
- Basic Module Functions
- modules
- Self Contained Units of Source Code
- modygliani
- MOlecular DYnamics GLobal ANalysis
- mogavs
- Multiobjective Genetic Algorithm for Variable Selection in Regression
- mogsa
- Multiple omics data integrative clustering and gene set analysis
- MOJOV
- Mojo Variants: Rare Variants analysis
- mokken
- Perform Mokken Scale Analysis in R
- moko
- Multi-Objective Kriging Optimization
- molaR
- Dental Surface Complexity Measurement Tools
- mombf
- Moment and Inverse Moment Bayes Factors
- mombf
- Moment and Inverse Moment Bayes Factors
- momentchi2
- Moment-Matching Methods for Weighted Sums of Chi-Squared Random Variables
- moments
- Moments, cumulants, skewness, kurtosis and related tests
- Momocs
- Morphometrics using R
- momr
- Mining Metaomics Data (MetaOMineR)
- mondate
- Keep track of dates in terms of months
- Mondrian
- A Simple Graphical Representation of the Relative Occurrence and Co-Occurrence of Events
- MonetDBLite
- In-Process Version of MonetDB for R
- MonetDB.R
- Connect MonetDB to R
- MonetDB.R
- Connect MonetDB to R
- mongolite
- Fast and Simple MongoDB Client for R
- monitoR
- Acoustic Template Detection in R
- monkeylearn
- Accesses the Monkeylearn API for Text Classifiers and Extractors
- monmlp
- Monotone Multi-Layer Perceptron Neural Network
- monocle
- Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq
- monogeneaGM
- Geometric Morphometric Analysis of Monogenean Anchors
- monographaR
- Taxonomic Monographs Tools
- MonoInc
- Monotonic Increasing
- monomvn
- Estimation for Multivariate Normal and Student-t Data with Monotone Missingness
- MonoPhy
- Allows to Explore Monophyly (or Lack of it) of Taxonomic Groups in a Phylogeny
- MonoPoly
- Functions to Fit Monotone Polynomials
- monreg
- Nonparametric Monotone Regression
- moonBook
- Functions and Datasets for the Book by Keon-Woong Moon
- MoonlightR
- Identify oncogenes and tumor suppressor genes from omics data
- moonsun
- Basic astronomical calculations with R
- MoPS
- MoPS - Model-based Periodicity Screening
- mopsocd
- MOPSOCD: Multi-objective Particle Swarm Optimization with Crowding Distance
- MOrder
- Check Time Homogeneity and Markov Chain Order
- morgenstemning
- Color schemes compatible with red-green color perception difficulties
- Morpho
- Calculations and Visualisations Related to Geometric Morphometrics
- morse
- MOdelling Tools for Reproduction and Survival Data in Ecotoxicology
- MorseGen
- Simple raw data generator based on user-specified summary statistics.
- MortalitySmooth
- Smoothing and Forecasting Poisson Counts with P-Splines
- MortHump
- Measure the Young Adult Mortality Hump
- mosaic
- Project MOSAIC Statistics and Mathematics Teaching Utilities
- mosaicData
- Project MOSAIC Data Sets
- mosaicManip
- Project MOSAIC (mosaic-web.org) manipulate examples.
- mosaicQA
- MOSAIC - Basic Quality Data Assurance for Epidemiologic Research
- mosaics
- MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)
- MoTBFs
- Learning Hybrid Bayesian Networks using Mixtures of Truncated Basis Functions
- motifbreakR
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites
- MotifDb
- An Annotated Collection of Protein-DNA Binding Sequence Motifs
- motifRG
- A package for discriminative motif discovery, designed for high throughput sequencing dataset
- motifStack
- Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
- MotilityLab
- Quantitative Analysis of Motion
- MotilityLab
- Quantitative Analysis of Motion
- MotIV
- Motif Identification and Validation
- motmot
- Models of Trait Macroevolution on Trees
- moult
- Models for Analysing Moult in Birds
- mountainplot
- Mountain Plots, Folded Empirical Cumulative Distribution Plots
- mousetrack
- Mouse-Tracking Measures from Trajectory Data
- mousetrap
- Process and Analyze Mouse-Tracking Data
- move
- Visualizing and Analyzing Animal Track Data
- move
- Visualizing and Analyzing Animal Track Data
- moveHMM
- Animal Movement Modelling using Hidden Markov Models
- moveWindSpeed
- Estimate Wind Speeds from Bird Trajectories
- movMF
- Mixtures of von Mises-Fisher Distributions
- mp
- Multidimensional Projection Techniques
- mpa
- CoWords Method
- MPAgenomics
- Multi-Patient Analysis of Genomic Markers
- MPAgenomics
- Multi-Patient Analysis of Genomic Markers
- MPAlars
- lars algorithm
- mpath
- Regularized Linear Models
- mpbart
- Multinomial Probit Bayesian Additive Regression Trees
- mpc
- MPC - Multiple Precision Complex Library
- mpcbs
- Multi-sample and Multiplatform CNV.
- MPCI
- Multivariate Process Capability Indices (MPCI)
- mpcv
- Multivariate Process Capability Vector
- MPDiR
- Data sets and scripts for Modeling Psychophysical Data in R.
- MPDiR
- Data sets and scripts for Modeling Psychophysical Data in R.
- MPFE
- Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data
- mph
- Multiscale persistent homology
- mpia
- Meaningful Purposive Interaction Analysis
- mpifarm
- Farm out a sequence of jobs to a cluster of slaves using MPI.
- MPINet
- The package can implement the network-based metabolite pathway identification of pathways.
- MPLikelihoodWB
- Modified Profile Likelihood Estimation for Weibull Shape and Regression Parameters
- mplot
- Graphical Model Stability and Variable Selection Procedures
- MplusAutomation
- Automating Mplus Model Estimation and Interpretation
- MplusAutomation
- Automating Mplus Model Estimation and Interpretation
- mpm
- Multivariate Projection Methods
- mpm
- Multivariate Projection Methods
- mpMap
- Multi-parent RIL genetic analysis
- mpmcorrelogram
- Multivariate Partial Mantel Correlogram
- mpmi
- Mixed-Pair Mutual Information Estimators
- mpmi
- Mixed-pair mutual information estimators
- mpmm
- Marginal Product Mixture Model for Relational Event Data
- mpoly
- Symbolic Computation and More with Multivariate Polynomials
- Mposterior
- Mposterior: R package for Robust and Scalable Bayes via a Median of Subset Posterior Measures
- mppa
- Statistics for analysing multiple simultaneous point processes on the real line
- mpr
- Multi-Parameter Regression (MPR)
- MPSEM
- Modeling Phylogenetic Signals using Eigenvector Maps
- MPsychoR
- Modern Psychometrics With R
- mpt
- Multinomial Processing Tree Models
- MPTinR
- Analyze Multinomial Processing Tree Models
- MPTinR
- Analyze Multinomial Processing Tree Models
- MPTinR2
- Analyze Multinomial Processing Tree Models
- mptools
- RAMAS Metapop Tools
- MPV
- Data Sets from Montgomery, Peck and Vining's Book
- mqext
- M-quantile extension of the mixed linear model
- mqqc
- Quality control of LCMS derived proteomic data
- mQTL
- Metabolomic Quantitative Trait Locus Mapping
- mQTL.NMR
- Metabolomic Quantitative Trait Locus Mapping for 1H NMR data
- mra
- Analysis of Mark-Recapture Data
- mratios
- Inferences for ratios of coefficients in the general linear model
- MRCE
- Multivariate regression with covariance estimation
- MRCV
- Methods for Analyzing Multiple Response Categorical Variables (MRCVs)
- mrds
- Mark-Recapture Distance Sampling
- mreg
- Fits regression models when the outcome is partially missing.
- mregions
- Marine Regions Data from 'Marineregions.org'
- MRH
- Multi-Resolution Estimation of the Hazard Rate
- mri
- Modified Rand Index (1 and 2.1 and 2.2) and Modified Adjusted Rand Index (1 and 2.1 and 2.2)
- mritc
- MRI Tissue Classification
- mRm
- An R package for conditional maximum likelihood estimation in mixed Rasch models.
- mrMLM
- Multilocus Random Mixed Linear Model for Genome-Wide Association Study and Linkage Analysis
- MRMR
- Multivariate Regression Models for Reserving
- mRMRe
- R package for parallelized mRMR ensemble feature selection
- mrpdata
- Data for Multilevel Regression and Poststratification
- MRPP
- Multiresponse permutation procedure and its variable importance and variable selection methods.
- MrPzurich2013
- MrP functions for MA class Zurich 2013
- MRQoL
- Minimal Clinically Important Difference and Response Shift Effect for Health-Related Quality of Life
- MRS
- Multi-Resolution Scanning for Cross-Sample Differences
- MRSP
- Multinomial Response Models with Structured Penalties
- MRsurv
- A multiplicative-regression model for relative survival.
- MRwarping
- Multiresolution time warping for functional data.
- msa
- Multiple Sequence Alignment
- msaenet
- Multi-Step Adaptive Elastic-Net
- msaFACE
- Moving Subset Analysis FACE
- msap
- Statistical analysis for Methylation-sensitive Amplification Polymorphism data
- msap
- Statistical analysis for Methylation-sensitive Amplification Polymorphism data
- msaR
- Multiple Sequence Alignment for R Shiny
- msarc
- Draw Diagrams (mis)Representing the Results of Mass Spec Experiments
- msBP
- Multiscale Bernstein Polynomials for Densities
- MSBVAR
- Markov-Switching, Bayesian, Vector Autoregression Models
- MSCMT
- Multivariate Synthetic Control Method Using Time Series
- MScombine
- Combine Data from Positive and Negative Ionization Mode Finding Common Entities
- mscstexta4r
- R Client for the Microsoft Cognitive Services Text Analytics REST API
- mscsweblm4r
- R Client for the Microsoft Cognitive Services Web Language Model REST API
- msda
- Multi-Class Sparse Discriminant Analysis
- MSDI
- Multivariate Standardized Drought Index (MSDI)
- mseapca
- Metabolite set enrichment analysis for factor loading in principal component analysis
- MSeasy
- Preprocessing of Gas Chromatography-Mass Spectrometry (GC-MS) data
- MSeasyTkGUI
- MSeasy Tcl/Tk Graphical User Interface
- MSG
- Data and Functions for the Book Modern Statistical Graphics
- MSGARCH
- Markov-Switching GARCH Models
- MSGFgui
- A shiny GUI for MSGFplus
- MSGFplus
- An interface between R and MS-GF+
- msgl
- High Dimensional Multiclass Classification Using Sparse Group Lasso
- MSGLasso
- Multivariate Sparse Group Lasso for the Multivariate Multiple Linear Regression with an Arbitrary Group Structure
- msgpackR
- A library to serialize or unserialize data in MessagePack format
- msgps
- Degrees of freedom of elastic net, adaptive lasso and generalized elastic net
- msim
- This package implements the method of simulated moments for the GLMM logit mixed model as described in Jiang's (1998) article, Consistent Estimators in Generalized Linear Mixed Models.
- msimul
- Utilities for Simulation in Monte Carlo Experiments
- msir
- Model-Based Sliced Inverse Regression
- MSIseq
- Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Exome Somatic Mutations
- mskf
- Markov Switching Kalman Filter
- msltrend
- Improved Techniques to Estimate Trend, Velocity and Acceleration from Sea Level Records
- msm
- Multi-State Markov and Hidden Markov Models in Continuous Time
- msm
- Multi-State Markov and Hidden Markov Models in Continuous Time
- msma
- Multiblock Sparse Multivariable Analysis
- msme
- Functions and Datasets for "Methods of Statistical Model Estimation".
- msmsEDA
- Exploratory Data Analysis of LC-MS/MS data by spectral counts
- msmsTests
- LC-MS/MS Differential Expression Tests
- msmtools
- Building Augmented Data to Run Multi-State Models with 'msm' Package
- MSnbase
- Base Functions and Classes for MS-based Proteomics
- MSnID
- Utilities for Exploration and Assessment of Confidence of LC-MSn Proteomics Identifications
- msos
- Datasets and Functions used in Multivariate Statistics: Old School by John Marden
- msPurity
- Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
- MSQC
- Multivariate Statistical Quality Control
- msr
- Morse-Smale Approximation, Regression and Visualization
- ms.sev
- Package for Calculation of ARMSS, Local MSSS and Global MSSS
- MSstats
- Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments
- msSurv
- Nonparametric Estimation for Multistate Models
- MST
- Multivariate Survival Trees
- mstate
- Data Preparation, Estimation and Prediction in Multi-State Models
- MSToolkit
- The MSToolkit library for clinical trial design
- MSwM
- Fitting Markov Switching Models
- mtconnectR
- Read Data from Delimited 'MTConnect' Data Files and Perform some Analysis
- mtcreator
- Creating MAGE-TAB files using mtcreator
- mtk
- Mexico ToolKit library (MTK)
- MTS
- All-Purpose Toolkit for Analyzing Multivariate Time Series (MTS) and Estimating Multivariate Volatility Models
- mtsdi
- Multivariate time series data imputation
- MTurkR
- R Client for the MTurk Requester API
- MTurkRGUI
- A Graphical User Interface for MTurkR
- MUCflights
- Munich Franz-Josef-Strauss Airport Pattern Analysis
- muckrock
- Data on Freedom of Information Act Requests
- MuFiCokriging
- Multi-Fidelity Cokriging models
- muhaz
- Hazard Function Estimation in Survival Analysis
- muir
- Exploring Data with Tree Data Structures
- Mulcom
- Calculates Mulcom test
- MullerPlot
- Generates Muller Plot from Population/Abundance/Frequency Dynamics Data
- MultAlloc
- Optimal Allocation in Stratified Sampling
- multcomp
- Simultaneous Inference in General Parametric Models
- multcomp
- Simultaneous Inference in General Parametric Models
- multcompView
- Visualizations of Paired Comparisons
- MultEq
- Multiple Equivalence Tests and Simultaneous Confidence Intervals
- multgee
- GEE Solver for Correlated Nominal or Ordinal Multinomial Responses
- MultiABEL
- Multi-Trait Genome-Wide Association Analyses
- MultiAssayExperiment
- Create Classes and Functions for Managing Multiple Assays on Sets of Samples
- multiAssetOptions
- Finite Difference Method for Multi-Asset Option Valuation
- multiband
- Period Estimation for Multiple Bands
- MultiBD
- Multivariate Birth-Death Processes
- multibiplotGUI
- Multibiplot Analysis in R
- multic
- Quantitative Linkage Analysis Tools using the Variance Components Approach
- multiCA
- Multinomial Cochran-Armitage Trend Test
- multiCA
- Multinomial Cochran-Armitage Trend Test
- multiClust
- multiClust: An R-package for Identifying Biologically Relevant Clusters in Cancer Transcriptome Profiles
- MultiCNVDetect
- Multiple Copy Number Variation Detection
- multicon
- Multivariate Constructs
- multicool
- Permutations of Multisets in Cool-Lex Order
- MultiDataSet
- Implementation of the BRGE's (Bioinformatic Research Group in Epidemiology from Center for Research in Environmental Epidemiology) MultiDataSet and MethylationSet
- multiDimBio
- Multivariate Analysis and Visualization for Biological Data
- multifwf
- Read Fixed Width Format Files Containing Lines of Different Type
- MultiGHQuad
- Multidimensional Gauss-Hermite Quadrature
- multigraph
- Plot and Manipulate Multigraphs
- multigroup
- Multigroup Data Analysis
- MultiLCIRT
- Multidimensional Latent Class Item Response Theory Models
- multilevel
- Multilevel Functions
- multilevelPSA
- Multilevel Propensity Score Analysis
- multimark
- Capture-Mark-Recapture Analysis using Multiple Non-Invasive Marks
- MultiMed
- Testing multiple biological mediators simultaneously
- MultiMeta
- Meta-analysis of Multivariate Genome Wide Association Studies
- multinbmod
- Regression analysis of overdispersed correlated count data
- MultinomialCI
- Simultaneous confidence intervals for multinomial proportions according to the method by Sison and Glaz
- multinomRob
- Robust Estimation of Overdispersed Multinomial Regression Models
- MultiOrd
- Generation of Multivariate Ordinal Variates
- multipanelfigure
- Infrastructure to Assemble Multi-Panel Figures (from Grobs)
- MultiPhen
- A Package to Test for Pleiotropic Effects
- multiPIM
- Variable Importance Analysis with Population Intervention Models
- multipleNCC
- Weighted Cox-Regression for Nested Case-Control Data
- multiplex
- Algebraic Tools for the Analysis of Multiple Social Networks
- multiplier
- Multiplier Analysis for SAM and FSAM
- multiplyr
- Data Manipulation with Parallelism and Shared Memory Matrices
- multipol
- multivariate polynomials
- multirich
- Calculate Multivariate Richness via UTC and sUTC
- MultiRR
- Bias, Precision, and Power for Multi-Level Random Regressions
- multiscan
- R package for combining multiple scans
- multisensi
- Multivariate Sensitivity Analysis
- multisom
- Clustering a Data Set using Multi-SOM Algorithm
- multispatialCCM
- Multispatial Convergent Cross Mapping
- MultiSV
- MultiSV: an R package for identification of structural variations in multiple populations based on whole genome resequencing
- multitaper
- Multitaper Spectral Analysis Tools
- MultivariateRandomForest
- Models Multivariate Cases Using Random Forests
- multivator
- A multivariate emulator
- multiwave
- Estimation of Multivariate Long-Memory Models Parameters
- multiway
- Component Models for Multi-Way Data
- multiwayvcov
- Multi-Way Standard Error Clustering
- MultNonParam
- Multivariate Nonparametric Methods
- multtest
- Resampling-based multiple hypothesis testing
- multxpert
- Common Multiple Testing Procedures and Gatekeeping Procedures
- multxpert
- Common Multiple Testing Procedures and Gatekeeping Procedures
- muma
- Metabolomics Univariate and Multivariate Analysis
- MuMIn
- Multi-Model Inference
- MuMIn
- Multi-Model Inference
- munfold
- Metric Unfolding
- munfold
- Metric Unfolding
- munsell
- Utilities for Using Munsell Colours
- munsellinterpol
- Interpolate Munsell Renotation Data from Hue/Chroma to CIE/sRGB
- munsellinterpol
- Interpolate Munsell Renotation Data from Hue/Chroma to CIE/sRGB
- muRL
- Mailmerge using R, LaTeX, and the Web
- murphydiagram
- Murphy Diagrams for Forecast Comparisons
- muscle
- Multiple Sequence Alignment with MUSCLE
- musica
- Multiscale Climate Model Assessment
- musicNMR
- Conversion of Nuclear Magnetic Resonance spectrum in audio file
- muStat
- Prentice Rank Sum Test and McNemar Test
- MutationalPatterns
- Studying patterns in base substitution catalogues
- mutils
- Basic Utilities for Data Management, Graphics, and Simulation
- mutoss
- Unified Multiple Testing Procedures
- mutoss
- Unified multiple testing procedures
- mutossGUI
- A Graphical User Interface for the MuToss Project
- MuViCP
- MultiClass Visualizable Classification using Combination of Projections
- MVA
- An Introduction to Applied Multivariate Analysis with R
- mvabund
- Statistical Methods for Analysing Multivariate Abundance Data
- mvabund
- Statistical Methods for Analysing Multivariate Abundance Data
- MVar.pt
- Analise multivariada (brazilian portuguese)
- MVB
- Mutivariate Bernoulli log-linear model
- MvBinary
- Modelling Multivariate Binary Data with Blocks of Specific One-Factor Distribution
- MvBinary
- Modelling Multivariate Binary Data with Blocks of Specific One-Factor Distribution
- mvbutils
- Workspace organization, code and documentation editing, package prep and editing, etc.
- mvc
- Multi-View Clustering
- MVCClass
- Model-View-Controller (MVC) Classes
- mvcluster
- Multi-View Clustering
- mvctm
- Multivariate Variance Components Tests for Multilevel Data
- mvcwt
- Wavelet analysis of multiple time series
- mvdalab
- Multivariate Data Analysis Laboratory
- mvglmmRank
- Multivariate Generalized Linear Mixed Models for Ranking Sports Teams
- mvGST
- Multivariate and directional gene set testing
- mvinfluence
- Influence Measures and Diagnostic Plots for Multivariate Linear Models
- mvinfluence
- Influence Measures and Diagnostic Plots for Multivariate Linear Models
- MVLM
- Multivariate Linear Model with Analytic p-Values
- mvmesh
- Multivariate Meshes and Histograms in Arbitrary Dimensions
- mvmeta
- Multivariate and Univariate Meta-Analysis and Meta-Regression
- mvMORPH
- Multivariate Comparative Tools for Fitting Evolutionary Models to Morphometric Data
- MVN
- Multivariate Normality Tests
- mvna
- Nelson-Aalen estimator of the cumulative hazard in multistate models
- mvnfast
- Fast Multivariate Normal and Student's t Methods
- mvngGrAd
- Moving Grid Adjustment in Plant Breeding Field Trials
- mvnmle
- ML estimation for multivariate normal data with missing values.
- mvnormtest
- Normality test for multivariate variables
- mvnpermute
- Generate New Multivariate Normal Samples from Permutations
- mvnTest
- Goodness of Fit Tests for Multivariate Normality
- mvoutlier
- Multivariate outlier detection based on robust methods
- mvPot
- Multivariate Peaks-over-Threshold Modelling for Spatial Extreme Events
- mvProbit
- Multivariate Probit Models
- mvProbit
- Multivariate Probit Models
- mvprpb
- Orthant Probability of the Multivariate Normal Distribution
- mvQuad
- Methods for Multivariate Quadrature
- MVR
- Mean-Variance Regularization
- mvrtn
- Mean and Variance of Truncated Normal Distribution
- mvsf
- Shapiro-Francia Multivariate Normality Test
- mvShapiroTest
- Generalized Shapiro-Wilk test for multivariate normality
- mvSLOUCH
- Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses
- mvst
- Bayesian Inference for the Multivariate Skew-t Model
- MVT
- Estimation and Testing for the Multivariate t-Distribution
- mvtboost
- Tree Boosting for Multivariate Outcomes
- mvtmeta
- Multivariate meta-analysis
- mvtnorm
- Multivariate Normal and t Distributions
- mvtnorm
- Multivariate Normal and t Distributions
- mvtsplot
- Multivariate Time Series Plot
- mwa
- Causal Inference in Spatiotemporal Event Data
- mwaved
- Multichannel Wavelet Deconvolution with Additive Long Memory Noise
- MWLasso
- Penalized Moving-Window Lasso Method for Genome-Wide Association Studies
- mxkssd
- Efficient mixed-level k-circulant supersaturated designs
- MXM
- Discovering Multiple, Statistically-Equivalent Signatures
- mycobacrvR
- Integrative immunoinformatics for Mycobacterial diseases in R platform
- mycor
- Automatic Correlation and Regression Test in a Data Frame
- myepisodes
- MyEpisodes RSS/API functions
- myFuncs
- Colins Usefull functions
- mygene
- Access MyGene.Info_ services
- myplotrix
- Various plotting functions
- Myrrix
- Interface to Myrrix. Myrrix is a complete, real-time, scalable clustering and recommender system, evolved from Apache Mahout.
- Myrrixjars
- External jars required for package Myrrix.
- myTAI
- Perform Evolutionary Transcriptomics Studies
- myvariant
- Accesses MyVariant.info variant query and annotation services
- mzID
- An mzIdentML parser for R
- mzmatch.Data
- Orbitrap Mass Spectrometry raw data example files
- mzmatch.R
- mzmatch and PeakML integration for XCMS.
- mzR
- parser for netCDF, mzXML, mzData and mzML and mzIdentML files (mass spectrometry data)
- mztwinreg
- Regression Models for Monozygotic Twin Data
- nabor
- Wraps 'libnabo', a Fast K Nearest Neighbour Library for Low Dimensions
- nacopula
- Nested Archimedean Copulas
- nacopulaNew
- Nested Archimedean Copulas
- NADA
- Nondetects And Data Analysis for environmental data
- nadiv
- Functions to construct non-additive genetic relatedness matrices
- nadiv
- (Non)Additive Genetic Relatedness Matrices
- NAEPprimer
- The NAEP Primer
- NAM
- Nested Association Mapping
- NameNeedle
- NameNeedle package
- namespace
- Provide namespace managment functions not (yet) present in base R
- namespace
- Provide namespace managment functions not (yet) present in base R
- nanop
- Tools for Nanoparticle Simulation and Calculation of PDF and Total Scattering Structure Function
- NanoStringDiff
- Differential Expression Analysis of NanoString nCounter Data
- NanoStringNorm
- Normalize NanoString miRNA and mRNA Data
- NanoStringQCPro
- Quality metrics and data processing methods for NanoString mRNA gene expression data
- NAPPA
- Performs the Processing and Normalisation of Nanostring miRNA and mRNA Data
- naptime
- A Flexible and Robust Sys.sleep() Replacement
- narray
- R Package for Handling Arrays in a Consistent Manner
- NarrowPeaks
- Shape-based Analysis of Variation in ChIP-seq using Functional PCA
- nasadata
- Interface to Various NASA API's
- nasaweather
- Collection of datasets from the ASA 2006 data expo
- nat
- NeuroAnatomy Toolbox for Analysis of 3D Image Data
- nat.nblast
- NeuroAnatomy Toolbox ('nat') Extension for Assessing Neuron Similarity and Clustering
- nat.templatebrains
- NeuroAnatomy Toolbox ('nat') Extension for Handling Template Brains
- naturalsort
- Natural Ordering
- nat.utils
- File System Utility Functions for 'NeuroAnatomy Toolbox'
- NB
- Maximum Likelihood method in estimating effective population size from genetic data
- nbc4va
- Bayes Classifier for Verbal Autopsy Data
- NbClust
- Determining the Best Number of Clusters in a Data Set
- nbconvertR
- Vignette Engine Wrapping IPython Notebooks
- NBDdirichlet
- NBD-Dirichlet Model of Consumer Buying Behavior for Marketing Research
- nbpMatching
- Functions for Optimal Non-Bipartite Matching
- nbpMatching
- Functions for Optimal Non-Bipartite Matching
- NBPSeq
- Negative Binomial Models for RNA-Sequencing Data
- NCA
- Necessary Condition Analysis
- nCal
- Nonlinear Calibration
- ncappc
- NCA Calculation and Population PK Model Diagnosis
- ncbit
- retrieve and build NBCI taxonomic data
- nccMLE
- MLE for nested case cohort and case-cohort designs
- ncdf4
- Interface to Unidata netCDF (Version 4 or Earlier) Format Data Files
- ncdf4.helpers
- Helper functions for use with the ncdf4 package
- ncdfFlow
- ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.
- ncdf.tools
- Easier 'NetCDF' File Handling
- ncdf.tools
- Easier 'NetCDF' File Handling
- nCDunnett
- Noncentral Dunnett's Test Distribution
- ncf
- Spatial Nonparametric Covariance Functions
- ncg
- Computes the noncentral gamma function
- NCIgraph
- Pathways from the NCI Pathways Database
- nclbayes
- Functions, Demos and Examples of Bayesian Analysis and Basic MCMC
- nclRadvanced
- nclRadvanced
- nclRcourses
- Functions for R courses at Newcastle University
- nclRefficient
- nclRefficient
- nclRggplot2
- nclRggplot2
- nclRintroduction
- A nclRintroduction
- nclRintroductionB
- nclRintroductionB
- nclRmodelling
- nclRmodelling
- nclRpackage
- A package for the Newcastle University R courses.
- nclRprogramming
- nclRprogramming
- nclRprogrammingB
- nclRprogrammingB
- NCmisc
- Miscellaneous Functions for Creating Adaptive Functions and Scripts
- ncvreg
- Regularization Paths for SCAD and MCP Penalized Regression Models
- ndjson
- Wicked-Fast Streaming 'JSON' ('ndjson') Reader
- ndl
- Naive Discriminative Learning
- ndtv
- Network Dynamic Temporal Visualizations
- ndvits
- NDVI Time series extraction and analysis
- nea
- Network Enrichment Analysis
- neaGUI
- An R package to perform the network enrichment analysis (NEA).
- neaGUI
- A user friendly R package to perform the network enrichment analysis (NEA).
- NEArender
- Network Enrichment Analysis
- nearfar
- Near-Far Matching
- neariso
- Near-Isotonic Regression
- neat
- Efficient Network Enrichment Analysis Test
- NeatMap
- Non-clustered heatmap alternatives
- needleman.wunsch
- Needleman Wunsch computation
- needs
- Attaches and Installs Packages
- needy
- needy
- NEff
- Calculating Effective Sizes Based on Known Demographic Parameters of a Population
- NegBinBetaBinreg
- Negative Binomial and Beta Binomial Bayesian Regression Models
- negenes
- Estimating the Number of Essential Genes in a Genome
- neldermead
- R port of the Scilab neldermead module
- nem
- (Dynamic) Nested Effects Models and Deterministic Effects Propagation Networks to reconstruct phenotypic hierarchies
- neotoma
- Access to the Neotoma Paleoecological Database Through R
- neotoma
- A Package to access the Neotoma Paleoecological Database using an API.
- nephro
- Biostatistics utilities for nephrology
- nephro
- Biostatistics Utilities for Nephrology
- NEpiC
- Network Assisted Algorithm for Epigenetic Studies Using Mean and Variance Combined Signals
- NestedCategBayesImpute
- Modeling and Generating Synthetic Versions of Nested Categorical Data in the Presence of Impossible Combinations
- NestedCohort
- Survival Analysis for Cohorts with Missing Covariate Information
- nestedRanksTest
- Mann-Whitney-Wilcoxon Test for Nested Ranks
- netassoc
- Inference of Species Associations from Co-Occurrence Data
- netbenchmark
- Benchmarking of several gene network inference methods
- netbenchmark
- Benchmarking of several gene network inference methods
- netbiov
- A package for visualizing complex biological network
- netClass
- netClass: An R Package for Network-Based Biomarker Discovery
- NetCluster
- Clustering for networks