All R packages

Found 13390 packages.

Accurate, Adaptable, and Accessible Error Metrics for Predictive Models
Automated Affymetrix Array Analysis Umbrella Package
Automated Affymetrix Array Analysis Base Package
Automated Affymetrix Array Analysis Classification Package
Automated Affymetrix Array Analysis Core Package
Automated Affymetrix Array Analysis Core Package
Automated Affymetrix Array Analysis Preprocessing Package
Automated Affymetrix Array Analysis Reporting Package
Automated Affymetrix Array Analysis Reporting Package
Gene expression enrichment in human brain regions
Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.
Access to Abbyy Optical Character Recognition (OCR) API
Tools for Approximate Bayesian Computation (ABC)
Computed ABC Analysis
Data Only: Tools for Approximate Bayesian Computation (ABC)
ABCDE_FBA: A-Biologist-Can-Do-Everything of Flux Balance Analysis with this package.
Implementation of Artificial Bee Colony (ABC) Optimization
Approximate Bayesian Computational Model for Estimating P2
Array Based CpG Region Analysis Pipeline
Approximate Bayesian Computation via Random Forests
Tools for ABC Analyses
The Analysis of Biological Data
The Analysis of Biological Data
Load Gap-Free Axon ABF2 Files
Easy Visualization of ABH Genotypes
Combine Multidimensional Arrays
Combine Multidimensional Arrays
Useful Tools for Jurimetrical Analysis Used by the Brazilian Jurimetrics Association
Data Processing and Analysis for the Alberta Biodiversity Monitoring Institute
Data Processing and Analysis for the Alberta Biodiversity Monitoring Institute
Modelling Multivariate Data with Additive Bayesian Networks
Angle-Based Outlier Detection
Abernethy Reliability Methods
Maximum Likelihood Estimation Models with Bias Adjustment Options for Reliability Analysis
Output functions for the Abernethy Reliability Methods package (abrem), including plotting.
Linear Rank Regression Models with Pivotal Monte Carlo Methods for Reliability Analysis
Improved False Positive Control of Gene-Permuting GSEA with Absolute Filtering
Time Resolved Simulations of Antibody Repertoires
ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences
High-Dimensional Principal Fitted Components and Abundant Regression
Abrupt Change-Point or Aberration Detection in Point Series
Exploring Accelerometer Data
Functions for Processing Minute-to-Minute Accelerometer Data
Functions for Processing Minute-to-Minute Accelerometer Data
Missing Value Imputation for Accelerometer Data
A package for controlling false positives rate in GWAS by estimating local inflation factor
Creation and Evaluation of Acceptance Sampling Plans
ACC & LMA Graph Plotting
Bayesian Accrual Prediction
Data Quality Visualization Tools for Partially Accruing Data
Categorical data analysis with complete or missing responses
Artificial Components Detection of Differentially Expressed Genes
Tools for Autoregressive Conditional Duration Models
Optimal Bayesian Experimental Design using the ACE Algorithm
ACE and AVAS for Selecting Multiple Regression Transformations
Estimating Dynamic Heritability and Twin Model Comparison
Estimating Dynamic Heritability and Twin Model Comparison
Classes and functions for Array Comparative Genomic Hybridization data.
Analysing Conditional Income Distributions
Align-and-Count Method comparisons of RFLP data
Algorithms for Calculating Microarray Enrichment (ACME)
Implements ACME Estimator of Bird and Bat Mortality by Wind Turbines
Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization
Annotated Copy-Number Regions
Annotated Copy-Number Regions
Modelling dependence with multivariate Archimax (or any user-defined continuous) copulas.
Autoregressive Conditional Poisson
Convenience functions for analytical Customer Relationship Management
A Cost-Minimal Regular Spanning Subgraph with TreeClust
Autocorrelation Robust Testing
Download, Manipulate, and Present American Community Survey and Decennial Data from the US Census
Gene Enrichment Analysis from ACSN Maps or GMT Files
Algorithmic Complexity for Short Strings
Data Only: Algorithmic Complexity of Short Strings (Computed via Coding Theorem Method)
A Companion Package for the Book "A Course in Statistics with R"
Asymptotic Classification Theory for Cognitive Diagnosis
Actigraphy Data Analysis
Animal Activity Statistics
Process activPAL Events Files
Actuarial Functions and Heavy Tailed Distributions
Functions for actuarial scientists
The R Package Ada for Stochastic Boosting
Applies Multiclass AdaBoost.M1, SAMME and Bagging
Analysis of big data from aCGH experiments using parallel computing and ff objects
Discrete and Global Optimization Routines
Discrete and Global Optimization Routines
A Class of Adaptive Elastic Net Methods for Censored Data
Implementation of an Accountable Data Analysis Process
Adaptive Mixture Discriminant Analysis
Adaptive Semiparametic Regression
Adaptive Semiparametric Regression with Simultaneous Confidence Bands
Gaussian Mixture Models (GMM)
Adaptive Sparsity Models
Tau-Leaping Stochastic Simulation
Implementation of a generic adaptive Monte Carlo Markov Chain sampler
Adaptive Smoothing of FMRI Data
Adaptive two-stage tests
Adaptive Design in Clinical Trials
Binomial and Multinomial Additive Hazards Models
Fit Additive Hazards Models for Survival Analysis
Discover and Install Useful RStudio Addins
Additivity Tests in the Two Way Anova with Single Sub-class Numbers
Additive Regression for Discrete Data
Analysis of Accelerated Destructive Degradation Test Data
Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences
Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences
'ade4' Tcl/Tk Graphical User Interface
'ade4' Tcl/Tk Graphical User Interface
Exploratory Analysis of Genetic and Genomic Data
An S4 Lattice-Based Package for the Representation of Multivariate Data
An S4 Lattice-Based Package for the Representation of Multivariate Data
Analysis of Habitat Selection by Animals
Home Range Estimation
Analysis of Habitat Selection by Animals
Analysis of Animal Movements
Tools to Deal with Raster Maps
adephylo: exploratory analyses for the phylogenetic comparative method.
Adephylo: Exploratory Analyses for the Phylogenetic Comparative Method
Adequacy of Probabilistic Models and General Purpose Optimization
Multivariate Multiscale Spatial Analysis
Multivariate Multiscale Spatial Analysis
Anderson-Darling GoF test
Anderson-Darling GoF test
calculate ad hoc distance thresholds for DNA barcoding identification
Adaptive Smoothing of Digital Images
Adjusted Bayesian Quantile Regression Inference
An adaptive lifting scheme algorithm
An Interpretation of the ADM method - automated detection algorithm.
SECR models with supplementary location information
Adaptive Mixture of Student-t Distributions
Admixture Graph Manipulation and Fitting
Regularized Model with Selecting the Number of Non-Zeros
Fast Clustering Using Adaptive Density Peak Detection
Spatial point patterns analysis
Annotation-Driven Clustering
Upper Clopper-Pearson Confidence Limits for Burn-in Studies under Additional Available Information
Object Oriented Advanced Clustering
Object Oriented Advanced Clustering
Fuzzy Clustering (Ensembling and Optimization)
Wavelet Analysis of Genomic Data from Admixed Populations
Change Point Analysis in ARIMA Forecasting
Tools to construct Asymmetric eigenvector maps (AEM) spatial variables
Download and Process AEMO Price and Demand Data
Applied Econometrics with R
Model-Based Estimation of Confounder-Adjusted Attributable Fractions
Analysis of Factorial Experiments
Analysis of Factorial Experiments
Analysis of Factorial Experiments
Affymetrix File Parsing SDK
Methods for Affymetrix Oligonucleotide Arrays
Graphics Toolbox for Assessment of Affymetrix Expression Measures
Affymetrix GeneChip software compatibility
structured corruption of affymetrix cel file data
Functions useful for those doing repetitive analyses with Affymetrix GeneChips
Affymetrix Quality Assessment and Analysis Tool
Linear Model of background subtraction and the Langmuir isotherm
Tools for parsing Affymetrix data files
GUI for limma package with Affymetrix microarrays
Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays
Probe Dependent Nearest Neighbours (PDNN) for the affy package
Methods for fitting probe-level models
QC Report Generation for affyBatch objects
Analyze and correct probe positional bias in microarray data due to RNA degradation
Easy extraction of individual probes in Affymetrix tiling arrays
Analysis of AFLP data
Hybrid Simulation and Genome Scan for Dominant Markers
Atomic Force Microscope Image Analysis
Run Code in the Background
Accelerated Failure Time Model with Generalized Estimating Equations
Analysis of Growth Data
Agreement of Differential Expression Analysis
Aggregate Numeric, Date and Categorical Variables by an ID
Agilent expression array processing package
Processing and Differential Expression Analysis of Agilent microRNA chips
Aggregation Operators and Preordered Sets
Various Methods for Measuring Agreement
Statistical Tools for Measuring Agreement
Statistical Procedures for Agricultural Research
Agricultural Datasets
Calculate Agreement or Consensus in Ordered Rating Scales
Calculate Agreement or Consensus in Ordered Rating Scales
Estimation in Adaptive Group Sequential Trials
Miscellaneous plotting and utility functions
Regularization for semiparametric additive hazards regression
Fast Searching for Multiple Keywords in Multiple Texts
Analytic Hierarchy Process
Estimation and Testing of Average Hazard Ratios
Model Selection and Multimodel Inference Based on (Q)AIC(c)
Estimation of Box-Cox Power Transformation Parameter
Tools for reading AIDA (http://aida.freehep.org/) files into R
Automatic Item Generator
AIM: adaptive index model
Create Pie Like Plot for Completeness
AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype
Suite of GR Hydrological Models for Precipitation-Runoff Modelling
Associated Kernel Estimations
Interpolation of Irregularly and Regularly Spaced Data
Adaptive Kmeans algorithm based on threshold
Data sets and examples for the book "Applied Longitudinal Analysis"
Atlas of Living Australia (ALA) Data and Resources in R
Constrained nonlinear optimization
Constrained Nonlinear Optimization
Immunoglobulin Clonal Lineage and Diversity Analysis
The Asymmetric Laplace Distribution
Analysis Of Differential Abundance Taking Sample Variation Into Account
Quantile Regression Using Asymmetric Laplace Distribution
Apache Log File Analysis
Estimating Absolute Protein Quantities from Label-Free LC-MS/MS Proteomics Data
Algorithmic Experimental Design
Haplotype Two Snips Out of a Paired Group of Patients
Allows you to Easily Interact with the Algorithmia Platform
Algebraic statistics in R
Comparison of Alternative Multiple Sequence Alignments
Alignment of Phonetic Sequences Using the 'ALINE' Algorithm
Generate Age-Length Keys for fish populations
Automated Large Linear Analysis Node
Allan Variance Analysis
Allele Imputation and Haplotype Reconstruction from Pedigree Databases
Identifying unique multilocus genotypes where genotyping error and missing data may be present
Allele Retention, Inbreeding, and Demography
A fast, unbiased and exact allelic exact test
Investigates Allele Specific Expression
Computes all of a word's possible spellings.
Alluvial Diagrams
R Client for the Lagotto Altmetrics Platform
Robust Cronbach's alpha with missing and non-normal data
Algorithms for High-Throughput Sequencing of Antigen-Specific T Cells
Generalization of the Convex Hull of a Sample of Points in the Plane
Obtain Alpha-Outlier Regions for Well-Known Probability Distributions
Implementation of the 3D Alpha-Shape for the Reconstruction of 3D Sets from a Point Cloud
alpine
Plot array lists
alternating logistic regression
Data to accompany Applied Linear Regression 3rd edition
Data to accompany Applied Linear Regression 3rd edition
Data to accompany Applied Linear Regression 4th edition
Data to accompany Applied Linear Regression 4rd edition
Multivariate Curve Resolution Alternating Least Squares (MCR-ALS)
ALS for the Automatic Chemical Exploration of mixtures
Accelerated line search algorithm for simultaneous orthogonal transformation of several positive definite symmetric matrices to nearly diagonal form.
Companion to Applied Linear Statistical Models
alternative CDF environments (aka probeset mappings)
Alternative Meta-Analysis Methods
Optimal Experimental Designs for Accelerated Life Testing
Another Multidimensional Analysis Package
Compare Gene Expressions from 2-Treatment RNA-Seq Experiments
Analyzing Moving Boundaries Using R
AMBUR-HVA
A Model Comparison Perspective
European Commission Annual Macro-Economic (AMECO) Database
Adaptive Management of Epidemiological Interventions
A Program for Missing Data
Additive and Multiplicative Effects Models for Networks and Relational Data
This package includes pricing function for selected American call options with underlying assets that generate payouts.
Post-processing tool for ADAPT 5
Adaptive Mixed LASSO
Adaptive Management Model Manager
Un-Ionized Ammonia Concentration
A Multidirectional Optimum Ecotope-Based Algorithm
A MORE flexible neural network package
Generates Samples or Complete List of Brazilian IBGE (Instituto Brasileiro De Geografia e Estatistica) Census Households, Geocoding it by Google Maps
Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach
An Algorithm for Automatic Peak Detection in Noisy Periodic and Quasi-Periodic Signals
Statistical Analysis of Amplicon Data of the Same Sample to Identify Artefacts
Analysis of amplicon enrichment panels
Prediction of Amyloid Proteins
Simple and Canonical Correspondence Analysis
Simple and Canonical Correspondence Analysis
Interface to 'Digital Ocean'
Analogue and Weighted Averaging Methods for Palaeoecology
Additional Functions for Use with the Analogue Package
A framework for sharing interactive data and plots from R through the web.
Regression Outlier Detection and Other Tools for Data Analysis
Model Layer for Automatic Data Analysis via CSV File Interpretation
Functions for analysis of fMRI datasets stored in the ANALYZE or NIFTI format.
Analyze Fuzzy Time Series
Bidirectional Connector to Anametrix API
An integrated analysis package of miRNA and mRNA expression data
Tools for microarray data analysis
Statistical analysis of sequins
Assigning Ancestry Based on Population References
Statistical analysis of surveys with anchoring vignettes
An extended Bayesian Learning Technique developed by Dr. Geoff Webb
Andrews curves
ANES Raking Implementation
Analysis of Copy Number Variation in Single-Cell-Sequencing Data
Adaptive Neuro Fuzzy Inference System in R
Simulate a Bus Route Creel Survey of Anglers
Inferring Dominance Hierarchies and Estimating Uncertainty
Analyze time-coded animal behavior data
Animal track reconstruction for high frequency 2-dimensional (2D) or 3-dimensional (3D) movement data.
A Gallery of Animations in Statistics and Utilities to Create Animations
Simple Animated Plots For R
Build Text Prediction Model
Feedforward Artificial Neural Network optimized by Genetic Algorithm
Annotation tools for Affymetrix biological metadata
Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.
Annotation for microarrays
Annotation Database Interface
Code for Building Annotation Database Packages
Annotation translation functions
Client to access AnnotationHub resources
Transform public data resources into Bioconductor Data Structures
Annotate microarrays and perform cross-species gene expression analyses using flat file databases.
Annotation of Genomic Regions to Genomic Annotations
AnnotLists: A tool to annotate multiple lists from a specific annotation file.
A Non-Parametric Statistical Test to Compare Clustering Structures
Analysis of Interactions
Analysis of Means
alpha-NOMINATE Ideal Point Estimator
Anonymize Data Containing Personally Identifiable Information
ANalysis Of Translational Activity (ANOTA).
Version of ant specific to R
Anti-Angiogenic Peptide Prediction
A GUI for Mean Measures of Divergence
Statistical Methods for Anthropometric Data
Implementation of gene expression anti-profiles
Tools for Antitrust Practitioners
programmatic interface to the AntWeb
Anything to 'POSIXct' or 'Date' Converter
Analysis of Overdispersed Data
Analysis of Overdispersed Data using S3 methods
Another Object Orientation System
Adverse Outcome Pathway Analysis
aoristic analysis with spatial output (kml)
Format Outputs of Statistical Tests According to APA Guidelines
Process the Apache Web Server Access Log Files
Generate APA Tables for MS Word
Create American Psychological Association (APA) Style Tables
Age-Period-Cohort Analysis
Affinity Propagation Clustering
Estimate protein complex membership using AP-MS protein data
An Implementation of the Additive Polynomial Design Matrix
Analyses of Phylogenetics and Evolution
Phylogenetic Methods for Multiple Gene Data
Geo-Processing Base Functions
A wrapper to the apicultuR set of APIs for NLP in Spanish
Datasets from Hosmer, Lemeshow and Sturdivant, "Applied Logistic Regression" (3rd Ed., 2013)
Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, plotsummary, plothulls, and some slider functions
Pre- and Postprocessing for AP-MS data analysis based on spectral counts
Compute Appell's F1 hypergeometric function
Approximate Path for Penalized Likelihood Estimators
Functions and Data Sets for 'Applied Predictive Modeling'
Functions and Data Sets for 'Applied Predictive Modeling'
Amyloid Propensity Prediction Neural Network
Bayesian prediction of complex computer codes
Applied Psychometrics With R
Datasets from Draper and Smith "Applied Regression Analysis" (3rd Ed., 1998)
Tools for the a Priori Comparison of Regression Modelling Strategies
Amdahl's Profiler, Directed Optimization Made Easy
General Utility Functions for the 'Agricultural Production Systems Simulator'
Analysis the output of Apsim software
Edit, Run and Evaluate APSIM Simulations Easily Using R
apsrtable model-output formatter for social science
Asymmetric Price Transmission
Average Positive Predictive Values (AP) for Binary Outcomes and Censored Event Times
Analyses of Phylogenetic Treeshape
Functions to help display air quality model output and monitoring data
Algorithms for Quantitative Pedology
Algorithms for Quantitative Pedology
Interface methods to use with an ActiveQuant Master Server
Interface methods to use with an ActiveQuant Master Server
Integrated Development Toolbox for Aquatic Chemical Model Generation
Integrated Development Toolbox for Aquatic Chemical Model Generation
Segmentation of an autoregressive Gaussian process of order 1
Arabic Stemmer for Text Analysis
Rigorous Data Reduction and Error Propagation of Ar40 / Ar39 Data
Association Rule Classification
Fitting Univariate Censored Linear Regression Model with Autoregressive Errors
Post-Processing of the Markov Chain Simulated by 'ChronoModel' or 'Oxcal'
Example Datasets from Archaeological Research
Archetypal Analysis
Archetypal Analysis
Plant Root System Architecture Analysis Using DART and RSML Files
Tools for Storing, Restoring and Searching for R Objects
Tools for Archiving, Managing and Sharing R Objects via GitHub
Time series autoregressive-based decomposition
Activated Region Fitting, fMRI data analysis (3D).
Activated Region Fitting, fMRI data analysis (3D).
Fractional ARIMA (and Other Long Memory) Time Series Modeling
Arfima-MLM Estimation For Repeated Cross-Sectional Data
Activated Region Fitting, fMRI data analysis.
Argos locations filter
Command Line Optional and Positional Argument Parser
Command-Line Argument Parser
Improved Communication to Users with Respect to Problems in Function Arguments
Data Analysis Using Regression and Multilevel/Hierarchical Models
Data Analysis Using Regression and Multilevel/Hierarchical Models
"Arnie" box office records 1982-2014
Analysis of Large Affymetrix Microarray Data Sets
A probe-level data file format used by aroma.affymetrix [DEPRECATED]
A Probe-Level Data File Format Used by 'aroma.affymetrix' [deprecated]
Copy-Number Analysis of Large Microarray Data Sets
Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework
Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types
Methods for accessing online The Cancer Genome Atlas (TCGA) data
Tools for Simulating Direct Behavioral Observation Recording Procedures Based on Alternating Renewal Processes
Arps Decline Curve Analysis in R
Apply a Function to a Margin of an Array
Array factor for 2D periodic arrays
Binarization of numeric data arrays
Access the ArrayExpress Microarray Database at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
ArrayExpress High Throughput Sequencing Processing Pipeline
Convenience Functions for Arrays
Convenience Functions for Arrays
multivariate outlier detection for expression array QA
Assessing array quality on spotted arrays
Quality metrics report for microarray data sets
geneChip Analysis Package
Implementation of wave correction for arrays
Adaptive Robust Regression normalization for Illumina methylation data
Adaptive Rejection Sampling
An Arsenal of 'R' Functions for Large-Scale Statistical Summaries
Aligned Rank Transform for Nonparametric Factorial Analysis
ARTFIMA Model Estimation
Time-Varying DBN Inference with the ARTIVA (Auto Regressive TIme VArying) Model
Aligned Rank Transform
Gene and Pathway p-values computed using the Adaptive Rank Truncated Product
Pathway and Gene-Level Association Test
Mining Association Rules and Frequent Itemsets
Classification Based on Association Rules
Mining NB-Frequent Itemsets and NB-Precise Rules
Mining NB-Frequent Itemsets and NB-Precise Rules
Mining Frequent Sequences
Visualizing Association Rules and Frequent Itemsets
Visualizing Association Rules and Frequent Itemsets
arulesViz - Visualizing Association Rules and Frequent Itemsets
Interface to the arXiv API
Ancestry Specific Allele Frequency Estimation
Model-output formatter for sociological research.
Data Sets for "Applied Survival Analysis Using R""
A Collection of Statistical Tools for Biologists
Export R objects to several markup languages
Assign Random Colors to Unique Items in a Vector
Simulations for Adaptive Seamless Designs
Reading ASD Binary Files in R
Predict Acetylated Lysine Sites
Association Studies for multiple SNPs and multiple traits using Generalized Structured Equation Models
David Scott's ASH Routines
Methods for Adaptive Shrinkage, using Empirical Bayes
Applied Statistical Hypothesis Tests
'Asio' C++ Header Files
Interface to the Algorithm Selection Benchmark Library
Linkage Map Construction using the MSTmap Algorithm
All sample mean normalization.
Animal Social Network Inference and Permutations for Ecologists
A collection of functions for estimating centrographic statistics and computational geometries for spatial point patterns
Bayesian Inference on Causal Genetic Variants using Affected Sib-Pairs Data
A General Framework for Multivariate Analysis with Optimal Scaling
A General Framework for Multivariate Analysis with Optimal Scaling
Analysis of Symmetry of Parasitic Infections
Analysis of alternative splicing using RNA-Seq
Adaptive Sum of Powered Score Test
Augments the Use of 'ASReml-R' in Fitting Mixed Models
Detection and Correction of Spatial Bias in HTS Screens
Verbose Assertions for Tabular Data (Data.frames and Data.tables)
Readable Check Functions to Ensure Code Integrity
A Lightweight Core of the 'assertive' Package
Assertions to Check Properties of Code
Assertions to Check Properties of Data
Assertions to Check Properties of Strings
Assertions to Check Properties of Strings
Assertions to Check Properties of Dates and Times
Assertions to Check Properties of Files
Assertions to Check Properties of Matrices
Assertions to Check Properties of Models
Assertions to Check Properties of Numbers
Assertions to Check Properties of Variables
Assertions for Checking the State of R
Assertions to Check Properties of Sets
Assertions to Check Properties of Strings
Assertions to Check Types of Variables
Assertive Programming for R Analysis Pipelines
Easy pre and post assertions.
An R package for subset-based association analysis of heterogeneous traits and subtypes
An R package for subset-based association analysis of heterogeneous traits and subtypes
Optimal pricing of assets with fixed expiry date.
Adaptive Signature Selection and InteGratioN (ASSIGN)
Population Assignment using Genomic, Non-Genetic or Integrated Data in a Machine-Learning Framework
A Suite of R Functions Implementing Spline Smoothing Techniques
Adaptive Subgroup Selection in Group Sequential Trials
Genetic Association Studies
Calculate the Assortativity Coefficient of Weighted and Binary Networks
Statistical Tests for Genetic Association Studies
Aster Models
Aster Models
Astronomy Functions, Tools and Routines
A Computational Tool for Astrochronology
Astronomical Data
Astronomy: time and position functions, misc. utilities
Astronomy Users Library
Applied Statistical Time Series Analysis
Advanced statistics using R
Average Shifted Visual Predictive Checks
Asymmetric Linkage Disequilibrium (ALD) for Polymorphic Genetic Data
Visualizing Asymmetric Data
Asymptotic statistic
Regression Analysis of Sparse Asynchronous Longitudinal Data
Calculate Power Utilizing Asymptotic Likelihood Ratio Methods
Inference for Average Treatment Effects using Covariate Balancing
A GTK GUI for teaching basic concepts in statistical inference, and doing elementary bayesian tests.
A GTK GUI for teaching basic concepts in statistical inference, and doing elementary bayesian tests.
Gene Expression Atlas query and gene set enrichment package.
Automatically Tuned Markov Chain Monte Carlo
Advanced Tools for Metrology
weather and climate analysis
Acoustic Traveltime Calculations for 1-D Atmospheric Models
Atools
Alternative Time Series Analysis
Support Querying Axibase Time-Series Database
Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape
Tools for Attribute VSI CUSUM Control Chart
Population Attributable Risk
Threshold independent performance measures for probabilistic classifiers.
AUC Maximization
Variable Selection with Random Forest and the Area Under the Curve
Audio Interface for R
audiolyzR: Give your data a listen
Bounds for Accounting Populations
Automatic Tracing and Display of Changes to Row Count
Hydrometeorological interpolation
Various Methods to Estimate the AUC
A package for doing things with words
Approximate Unconditional and Permutation Tests
Testing Autocorrelation through bootstrap and surrogate methods
An Interface to the 'AutoDesk' 'API' Platform
Sparse Autoencoder for Automatic Learning of Representative Features from Unlabeled Data
Multiple Heat Maps for Projected Coordinates
Automatic interpolation package
Automated Hierarchical Multiple Regression with Assumptions Checking
Autologistic and Automultinomial Spatial Regression and Variable Selection
Partial Least Squares Regression with Backward Selection of Predictors
Minimum Distance Estimation in Autoregressive Model
General-to-Specific (GETS) Modelling
Performs Specification Search in Structural Equation Models
Automated Vector Autoregression Models and Networks
Calculation of Average Population Attributable Fractions and Confidence Intervals
Adaptation of Virtual Twins Method from Jared Foster
'AWS' Java 'SDK' for R
A Simple Client to the 'AWS' Key Management Service
Adaptive Weights Smoothing
Client for the Amazon Alexa Web Information Services API
Get EC2 Instance Metadata
Boilerplate R Access to the Amazon Web Services ('AWS') Java SDK
Class and Methods Definitions for Packages 'aws', 'adimpro', 'fmri', 'dwi'
Client for AWS Polly
AWS SES Client Package
Amazon Web Services Request Signatures
AWS SNS Client Package
AWS SQS Client Package
A generalization of Fisher's exact test
Interface with Azure Machine Learning Datasets, Experiments and Web Services
Bayesian Two-Zone Model
Adaptive differential evolution, b6e6rl variant
BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes
Bayesian Bacterial Growth Curve Analysis in R
Ribosome Profiling Data Analysis
Bayesian Bootstrap Predictive Mean Matching - Multiple and Single Imputation for Discrete Data
US Baby Names 1880-2014
Bayesian Analysis of Chip-chip experiment
Bubble Chart to Compare Biological Annotations by using DAVID
Modeling Framework for Cellular Communities in their Environments
Bayesian Analysis of Computer Code Output (BACCO)
Bayesian Augmented Control for Clinical Trials
Bindings to the Backblaze B2 API
This packages allow users to ``background'' computations.
Backward Pipe Operator
Reimplementations of Functions Introduced Since R-3.0.0
Learning Causal Cyclic Graphs from Unknown Shift Interventions
Exploring Portfolio-Based Conjectures About Financial Instruments
Interactive Graphics for Portfolio Data
Controlling bias and inflation in association studies using the empirical null distribution
Choice of the Hyperparameter Omega in the Bayesian Adjustment for Confounding (BAC) Algorithm
Bayesian Adjustment for Confounding
Bayesian Analysis of Differential Expression in RNA Sequencing Data
Create Badges for 'Travis', 'Repostatus' 'Codecov.io' Etc in Github Readme
A package for identifying sample mixups in combined expression and genotyping studies.
BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage
Bayesian Average Error approach to Sample Size Determination
BAses GIving DIStances
Ensemble bagging and boosting classifiers
A Bayesian Approach for Geneset Selection
Library Driven Compound Profiling in GC-MS Data
Balance Check for Multiple Covariates in Matched Observational Studies
Balanced and Spatially Balanced Sampling
Flexible, isoform-level differential expression analysis
Functions and Datasets for Books by Jeff Gill
Bivariate Angular Mixture Models
Bayesian Meta-Analysis of Diagnostic Test Data
Bayesian Additive Models for Location Scale and Shape (and Beyond)
Analysis and Visualization of Macroevolutionary Dynamics on Phylogenetic Trees
Extract read count signals from bam files
Functions for simple A/B split test and multi-armed bandit analysis
Bayesian Network Feature Finder
Make Banner Comments with a Consistent Format
Hierarchical Bayesian ANOVA Models
Download Data from the Bank of Mexico
Projection of cancer incidence and mortality data using Bayesian APC models fitted with INLA
Batch Effect Removal and Addon Normalization (in Phenotype Prediction using Gene Data)
Bayesian Prediction of Stochastic Processes
Barcode distribution plots
Barcode distribution plots
Species Identification using DNA Barcodes
Multivariate Methods in Ecology with R: Basic Algorithms
Barnard's Unconditional Test
Bayesian Additive Regression Trees
bartMachine JARs
Wasserstein Barycenter
Bayesian Model Averaging using Bayesian Adaptive Sampling
Base 64 encoder/decoder
Base64 Encoder and Decoder
Tools for base64 encoding
Fast and URL-Safe Base64 Encoder and Decoder
Infrastructure for Computing with Basis Functions
Infrastructure for Computing with Basis Functions
Baseline Correction of Spectra
R SDK for BaseSpace RESTful API
Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data
Recovering a Basic Space from Issue Scales
Basic peak calling on STARR-seq data
BASIX: An efficient C/C++ toolset for R.
Bayesian Adaptive Spline Surfaces
Age-Specific Survival Analysis from Incomplete Capture-Recapture/Recovery Data
Big Data Statistical Analysis for High-Dimensional Models
Biodiversity Assessment Tools
HTML reports and so on
Batching Routines in Parallel and Passing Command-Line Arguments to R
Statistical Experiments on Batch Computing Clusters
Downloads and Organizes Financial Data for Multiple Tickers
Batch Computing with R
Consistent Batch Means Estimation of Monte Carlo Standard Errors
Batch Effects Quality Control Software
Tools for Computation on Batch Systems
Bayesian Tensor Factorization Linked to External Data
Convert Categorical Representations of Logicals to Actual Logicals
Bayesian AuTomated Metabolite Analyser for NMR spectra
An R Package for Data Reduction by Battery Reduction
Bayesian Biclustering with Subject and Variable Importance
Bayesian Feature Allocation Model for Tumor Heterogeneity
Fast Bayesian Methods for AB Testing
Bayesian Inference for Image Boundaries
Bayesian Estimation of Mixtures of Multivariate Bernoulli Distributions
Miscellaneous Functions for Bioinformatics and Bayesian Statistics
An Implementation of Rubin's (1981) Bayesian Bootstrap
Bridge Regression
Bayesian Evidence Combination
Bayesian Community Ecology Analysis
Power Calculations and Bayesian Analysis of Count Distributions and FECRT Data using MCMC
Bayesian Analysis of Censored Regression Models Under Scale Mixture of Skew Normal Distributions
Functions and Datasets for the book "Bayesian Data Analysis"
The Bayesian Dynamic Conditional Correlation GARCH Model
Graphical User Interface for bayesTFR, bayesLife and bayesPop
Procedure for evaluate marginal likelihood for quantitative STR DNA mixture bayesian models
Computation of Bayes Factors for Common Designs
Computation of Bayes factors for common designs
Compute Bayes factors using the GIBI interface
Bayesian Inference for Factor Modeling
Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations
Scalable Rejection Sampling for Bayesian Hierarchical Models
Bayesian Analysis of Generalized Elliptical Semi-Parametric Models and Flexible Measurement Error Models
Bayesian Regression Model with Mixture of Two Scaled Inverse Chi Square as Hyperprior
Bayesian Melding of GPS and DR Path for Animal Tracking
Bayesian Beta regression: joint mean and precision modeling
Bayesian Estimation of the ETAS Model for Earthquake Occurrences
Bayesian Network Modeling and Analysis
General-Purpose MCMC and SMC Samplers and Tools for Bayesian Statistics
Bayesian Methods for Image Segmentation using a Potts Model
BayesKnockdown: Posterior Probabilities for Edges from Knockdown Data
Bayesian Latent Class Analysis
Bayesian Projection of Life Expectancy
Logistic Regression
Bayesian Analysis of Contingency Table Data
Bayesian Inference for Marketing/Micro-Econometrics
Designing Bayesian Multi-Arm Multi-Stage Studies
Mixtures-of-Experts Markov Chain Clustering and Dirichlet Multinomial Clustering
Default Bayesian Hypothesis Tests for Correlation, Partial Correlation, and Mediation
Bayesian Random-Effects Meta-Analysis
Bayesian Mixture Models with JAGS
Bayesian Mixture Survival Models using Additive Mixture-of-Weibull Hazards, with Lasso Shrinkage and Stratification
BayesNI: Bayesian Testing Procedure for Noninferiority with Binary Endpoints
Bayesian Analysis of ChIP-seq Data
Variable Selection in a Hierarchical Bayesian Model for a Hazard Function
Hierarchical Bayesian Model for a Hazard Function
Plotting for Bayesian Models
Probabilistic Population Projection
Hierarchical Bayesian analysis of ecological count data
Bayesian Quantile Regression
Bayesian Regression in R
Bayesian Regression Models with Continuous Shrinkage Priors
Bayesian Essentials with R
Bayesian Variable Selection Using Simplified Shotgun Stochastic Search with Screening (S5)
Bayesian Analysis of Small Area Estimation
Computation of Bayes factors for interrupted time-series designs
Computation of Bayes factors for interrupted time-series designs
MCMC Sampling of Bayesian Linear Models via Summary Statistics
Bayesian Survival Regression with Flexible Error and Random Effects Distributions
Bayesian Fertility Projection
Bayesian thresholds mixed-effects models for categorical data
Bayesian Additive Regression Trees
Bayesian Tree Prior Simulation
BayesValidate Package
Bayes Factors, Model Choice and Variable Selection in Linear Models
R Utilities Accompanying the Software Package BayesX
R Package Distribution of the BayesX C++ Development Sources
R Package Distribution of the BayesX C++ Sources
Bayesian analysis of haplotype association using Markov Chain Monte Carlo
R Functions for Bayesian Hazard Rate Estimation
R Package for Baylor University Educational Psychology Quantitative Courses
Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies
Empirical Bayesian analysis of patterns of differential expression in count data
Bayesian Analysis of Significantly Mutated Genes in Cancer
On Bayesian analysis of Threshold autoregressive model (BAYSTAR)
Miscellaneous Basic Functions
Solving and Optimizing Large-Scale Nonlinear Systems
Solving and Optimizing Large-Scale Nonlinear Systems
BBCAnalyzer: an R/Bioconductor package for visualizing base counts
Bayesian bandwidth estimation and semi-metric selection for the functional kernel regression with unknown error density
Bayesian bandwidth estimation for multivariate kernel regression with Gaussian error
Bayesian Estimation of Incoherent Neutron Scattering Backgrounds
Miscellaneous Helper Functions for B. Bischl
Tools for General Maximum Likelihood Estimation
Tools for general maximum likelihood estimation
Brownian bridge movement model
Biogeography-Based Optimization
Bayesian Behavioural Capture-Recapture Models
Gene Regulatory Network Inference with Bc3net
Business and Customer Analytics
Bias-Corrected Bayesian Classification with Selected Features
Business Cycle Dating and Plotting Tools
Diagnostics Plots for Bicluster Data
Diagnostics Plots for Bicluster Data
Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data
Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data
Bayesian Cost Effectiveness Analysis
The Bayesian Causal Effect Estimation Algorithm
B Cell Receptor Somatic Hyper Mutation Analysis
Bayesian Models for Cost-Effectiveness Analysis in the Presence of Structural Zero Costs
Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate Estimation, and Non-Parametric Phase Modelling
Bayesian Palaeoclimate Reconstruction from Pollen Data
Bayesian Hierarchical Clustering Using Spike and Slab Models
Bayesian Hierarchical Clustering Using Spike and Slab Models
Bayesian Analysis of Change Point Problems
Behavioral change point analysis of animal movement
Bayesian Multiple Changepoint Detection Using Metadata
Breast Cancer Risk Assessment
Predicting binding site consensus from ranked DNA sequences
Advanced Analysis of B Cell Receptor Repertoire Data
Bayesian Continual Reassessment Method for Phase I Dose-Escalation Trials
Bias-Corrected Methods for Estimating the ROC Surface of Continuous Diagnostic Tests
'Blowfish' Password Hashing Algorithm
A Bayesian Semiparametric Factor Analysis Model for Subtype Identification (Clustering)
Cross-Validation for the SVD (Bi-Cross-Validation)
Density Estimation for Grouped Data
Bounded Density Estimation
Bayesian Structure Learning in Graphical Models using Birth-Death MCMC
A Package for Transparent Artificial Data Generation
Bootstrapped Differences of Time Series
Optimisation of Bayesian Decision Problems
Inference and design for predictive values in binary diagnostic tests
Big Data Ready
Beta Drift Analysis
Remove Weekends and Holidays from ggplot2 Axes
Routines for Block Diagonal Symmetric matrices
Routines for Block Diagonal Symmetric matrices
Biodiversity Data Visualizations
Bayesian Inference for Discrete Weibull Regression
Bayesian Dynamical System Model
Biometric Exploratory Analysis Creation House
Quality assessment and low-level analysis for Illumina BeadArray data
Bead filtering for Illumina bead arrays
Analysis of Illumina BeadArray SNP data including MSV markers
Normalization and reporting of Illumina SNP bead arrays
Compression of Illumina BeadArray data
Visualization via Beanplots (like Boxplot/Stripchart/Violin Plot)
Bayesian Estimate of Age-specific Nest Survival Probabilities
Bayesian Analysis of Heterogeneous Treatment Effect
Bureau of Economic Analysis API
BEAT - BS-Seq Epimutation Analysis Toolkit
Correct for batch effects in DNA methylation data
Quantifies effects of geo/eco distance on genetic differentiation
Matrices Backed by Binary PED Files (PLINK)
Genomic Region Processing using Tools Such as BEDtools, BEDOPS and Tabix
Easily Play Notification Sounds on any Platform
The Bee Swarm Plot, an Alternative to Stripchart
Download Historical Data from the Belgrade Stock Exchange
28 benchmark densities from Berlinet/Devroye (1994)
Benchmark Experiments Toolbox
Benchmark and Frontier Analysis Using DEA and SFA
Crowd Sourced System Benchmarks
Data Set for the 'benchmarkme' Package
High Precise Measurement of R Expressions Execution Time
Benford Analysis for Data Validation and Forensic Analytics
Statistical Tests for Evaluating Conformity to Benford's Law
Bent-Cable Regression for Independent Data or Autoregressive Time Series
Benthic Ecosystem Quality Index 2
Batch Effects Removal
Bayesian analysis for exponential random graph models
Function Collection Related to Plotting and Hydrology
Bertin matrix display
Bessel Functions Computations and Approximations
Bessel -- Bessel Functions Computations and Approximations
Bayesian Estimation Supersedes the t-Test
Best Subset GLM
Mini Games from Adventures of Beta and Bit
Detecting rare variants for quantitative traits using nuclear families
Beta-Diversity of Species Interactions
Partitioning Beta Diversity into Turnover and Nestedness Components
Partitioning Beta Diversity into Turnover and Nestedness Components
Functions to incorporate taxonomic uncertainty on multivariate analyses of ecological data
Beta Regression
Beta Regression
Standardized Beta Coefficients
Simulation, Estimation and Forecasting of Beta-Skew-t-EGARCH Models
Bethel's algorithm.
Identify differentially expressed genes in microarray time-course data
Brazilian Economic Time Series
Bayesian Evaluation of Variant Involvement in Mendelian Disorders
Bayesian Spectral Inference for Stationary Time Series
Bezier Curve and Spline Toolkit
Bayesian Factor Analysis
Bayesian Factor Analysis
Breaks For Additive Season and Trend (BFAST)
Breaks For Additive Season and Trend
Basic Unix Process Control
Bayesian Fractional Polynomials
Bayesian Fractional Polynomials
BGAfun A method to identify specifity determining residues in protein families
Annotation and gene expression data retrieval from Bgee database
Binary Generalized Extreme Value Additive Models
Bayesian Estimation in Generalized Linear Models
Bayesian Generalized Linear Regression
Bayesian Generalized Linear Regression
Utilities for Bayesian Generalized Linear Regression
Example BGM Files for the Atlantis Ecosystem Model
Bayesian models for differential gene expression
Gaussian Mixture Modeling Algorithms And The Belief-based Mixture Modeling
Markov Beta and Gamma Processes for Modeling Hazard Rates
Block Gibbs Sampler with Incomplete Multinomial Distribution
Bayesian Group Sparse Multi-Task Regression
Bayesian Gene eXpression
The Boost C++ Libraries
Boost C++ Header Files
General likelihood exploration
Bayesian Hierarchical Clustering
Useful Functions for Box, Hunter and Hunter II
Biomarker Threshold Models
Bias correction of the parameter estimates of the beta regression model
Biased Urn Model Distributions
Parse a BibTeX File to a Tibble
R Wrapper for Java Implementation of BiBit
Bibliometric and Co-Citation Analysis Tool
Reading Mass Spectrometric Search Results
bibtex parser
bibtex parser
Biclustering Analysis and Results Exploration
BiCluster Algorithms
BiCluster Algorithms
Ranking of biclusters using another data source
Calculates the bidimensional regression between two 2D configurations
Tools for Accessing the Botanical Ecology and Information Network Database
Inferences for bi- and trifactorial trial designs
Binary Choice Models with Fixed Effects
Tools for Survey Statistics in Educational Assessment
BLAS routines for native R matrices and big.matrix objects.
BLAS routines for native R matrices and big.matrix objects.
A library of utilities for big.matrix objects of package bigmemory.
Utilities for 'big.matrix' Objects from Package 'bigmemory'
Big Data Analytics
Case-Control Analysis of Multi-Allelic Loci
Fast Linear Models for Objects from the 'bigmemory' Package
Distributed Gaussian Process Calculations
Constraint based modeling in R using metabolic reconstruction databases
Scalable Least-Angle Regression and Lasso
Extending Lasso Model Fitting to Big Data
bounded memory linear and generalized linear models
Procedure for doing inference of one-way Linear Mixed Effects models.
Illumina methylation array analysis for large experiments
Manage massive matrices with shared memory and memory-mapped files
Manage Massive Matrices with Shared Memory and Memory-Mapped Files
An extension of the bigmemory package with added safety, convenience, and a factor class
A shared resource interface for Bigmemory Project packages
A shared resource interface for Bigmemory Project packages
Bindings for the BigML API
Estimation of models with limited dependent variables
PCA, Transpose and Multicore Functionality for 'big.matrix' Objects
Interface with Google BigQuery with Shiny Compatibility
Big Quadratic Inverse Covariance Estimation
Generalized Linear Models (GLM) for Large Data Sets
An Interface to Google's 'BigQuery' 'API'
Generalized Ridge Regression (with special advantage for p >> n cases)
Generalized Ridge Regression (with special advantage for p >> n cases)
Constructing Large Systems of Structural Equations
Smoothing Splines for Large Samples
Stepwise Selection for Large Data Sets
Table, Apply, and Split Functionality for Matrix and 'big.matrix' Objects
Nonparametric Analysis of Bivariate Gap Time with Competing Risks
Top Scoring Pair based methods for classification
Dimension Reduction Methods for Multivariate Time Series
Bay Area Bike Share Trips in 2014
BInary Longitudinal Data
Power for SNP analyses using silver standard cases
Estimates Mixture Models for Case-Control Data
The Bimodality Index
Binarization of One-Dimensional Data
Variable Selection for Binary Data Using the EM Algorithm
Mean and Variance Modeling of Binary Data
Binary Logic
Multi-Class Discriminant Analysis using Binary Predictors
Generation of Artificial Binary Data
Parametrized Active Bindings
An 'Rcpp' Interface to Active Bindings
Methods for Analyzing Binned Income Data
Binford's Hunter-Gatherer Data
Binary Graph Analysis Tools
Evaluation and experimental design for binomial group testing
Haar-Fisz functions for binomial data
A Binary Download Manager
Asymptotic simultaneous confidence intervals for many-to-one comparisons of proportions
Data Generation with Binary and Continuous Non-Normal Components
Simultaneous Generation of Multivariate Binary and Normal Variates
Binomial Confidence Intervals For Several Parameterizations
Binomial Confidence Intervals For Several Parameterizations
'Taxonomic' Specification and Parsing Methods
Generates binomial random numbers via the coupling from the past algorithm
Efficient MCMC for Binomial Logit Models
Confidence Intervals and Sample Size Determination for a Binomial Proportion under Simple Random Sampling and Pooled Sampling
Performing diagnostics on binomial regression models
Performing diagnostics on binomial regression models
Concurrent Generation of Binary, Ordinal and Continuous Data
Cut Numeric Values into Evenly Distributed Groups
Exact Binary Sequential Designs and Analysis
Generate PDFs and CDFs from Binned Data
Data Preprocessing, Binning for Classification and Regression
Biological Structure Analysis
Cross-target analysis of small molecule bioactivity
Biobase: Base functions for Bioconductor
Turn Bioconductor objects into tidy data frames
Bioclim Variables Calculator
Interactive Multi-Omics Cancers Data Visualization and Analysis
BiocCaseStudies: Support for the Case Studies Monograph
Bioconductor-specific package checks
S4 generic functions for Bioconductor
Graph examples and use cases in Bioinformatics
Install/Update Bioconductor, CRAN, and github Packages
Feature Selection and Classification with the Embedded Validation Procedures for Biomedical Data Analysis
Bioconductor facilities for parallel evaluation
Simulation of Biomass Crops
Standard styles for vignettes and other Bioconductor documents
Categorized views of R package repositories
Tools to aid the development of Bioconductor Workflow packages
Biodemography Functions
Different distance measures
Package for Community Ecology and Suitability Analysis
Multilevel Modeling of Dendroclimatical Fluctuations
Biodiversity Assessment Using Functional Tools
Process Biogas Data and Predict Biogas Production
Point Data Quality Assessment and Coordinate Conversion
BioGeography with Bayesian (and Likelihood) Evolutionary Analysis in R Scripts
N-Gram Analysis of Biological Sequences
Explore Life Histories
Tools for Microscopy Imaging
Simulation of Dynamic Microbial Inactivation
Predict environmental conditions from biological observations
Modelling and Forecasting Biological Invasions
An interface package (beta) for the BIOM file format.
Find Biomarkers in Two-Class Discrimination Problems
Interface to BioMart databases (e.g. Ensembl, COSMIC, Wormbase and Gramene)
Genomic Data Retrieval
Estimating Aboveground Biomass and Its Uncertainty in Tropical Forests
An interface package for the BIOM file format
Ensemble platform for species distribution modeling
Ensemble Platform for Species Distribution Modeling
Ensemble Platform for Species Distribution Modeling
Utilities for the BIOM (Biological Observation Matrix) Format
Model-View-Controller (MVC) Classes That Use Biobase
Copy Number study and Segmentation for multivariate biological data
Routines for the functional analysis of biological networks
Biological and chemical data networks
Biomarker Prognostic Enrichment Tool
BioPhysConnectoR
Visualization of Overlapping Results with Heatmap
Simulation of deterministic and stochastic biochemical reaction networks using Petri Nets
Detect tissue heterogeneity in expression profiles with gene sets
Search and Download Papers from the bioRxiv Preprint Server
From BIOlogical Sequences to MultiDimensional Scaling
Classification for Biological Sequences
Tools for Electromyogram Signals (EMG) Analysis
Signature discovery from omics data
Initiation à la Statistique avec R
Misc Tools of the Department of Biostatistics, EBPI, University of Zurich
String objects representing biological sequences, and matching algorithms
Package for high-throughput data processing, outlier detection, noise removal and dynamic modeling
Calculation of Freshwater Biotic Indices
Tools for Biometry and Applied Statistics in Agricultural Science
Basic graphic utilities for visualization of genomic data.
Visualising Bipartite Networks and Calculating Some (Ecological) Indices
Bootstrap on Classical Biplots and Clustering Disjoint Biplot
Interactive Biplots in R
Interactive Biplots in R
BIPOD (Bayesian Inference for Partially Observed diffusions)
Connector for the Wordnik API
Methods to Analyse Ring Re-Encounter Data
High-performing routines for the randomization of a bipartite graph (or a binary event matrix), undirected and directed signed graph preserving degree distribution (or marginal totals)
MA Birk's Functions
Bayesian Inference of Regulation of Transcriptional Activity
Bayesian Inference of Regulatory Influence on Expression (biRte)
Tools to find bad commits with git bisect
Toolkit to Identify Candidate Synthetic Lethality
Processing and analyzing bisulfite sequencing data
Bayesian Isotonic Regression with Bernstein Polynomials
A class for vectors of 1-bit booleans
A Class for Vectors of 1-Bit Booleans
A S3 Class for Vectors of 64bit Integers
A S3 Class for Vectors of 64bit Integers
Bitwise Operations
Binarization and Trinarization of One-Dimensional Data
Bayesian Inference of Transmission Routes Using Genome Sequences
Transcript expression inference and differential expression analysis for RNA-seq data
Bias-Variance Analysis of the Misclassification Rate
Estimating the Parameters of Some Bivariate Distributions
Sample size calculations for bivariate longitudinal data
Tolerance Intervals and Errors-in-Variables Regressions in Method Comparison Studies
Bivariate Residual Plots with Simulation Polygons
Generation of Bivariate Uniform Data and Its Relation to Bivariate Binary Data
Conduct univariate and bivariate wavelet analyses
Conduct Univariate and Bivariate Wavelet Analyses
Functions to compute the biweight mean vector and covariance & correlation matrices
Business Days Calculations and Utilities
Bayesian Kernel Machine Regression
Bayesian Kernel Projection Classifier
Black Box Optimization and Exploration of Parameter Space
Blaker's Binomial Confidence Limits
Plots (Slightly Extended) Bland-Altman Plots
Send Emails Using 'Blat' for Windows
Calculate and Analyze Blau Status for Measuring Social Distance
Bayesian Latent Variable Analysis
Black-Litterman and copula-opinion pooling frameworks
Black-Litterman and Copula Opinion Pooling Frameworks
A New Link Function that Blends Two Specified Link Functions
Analyze biotic homogenization of landscapes
United Kingdom coastlines
Package for the preprocessing and analysis of the Illumina microarrays on the detector (bead) level.
Data Exploration with Multiple Machine Learning Algorithms
Fitting block ERGM given the block structure on social networks
Binomial linear and linear-expit regression
Bayesian Linear Mixed-Effects Models
Data Files and Functions Accompanying the Book "Bayesian Data Analysis in Ecology using R, BUGS and Stan"
Broken Line Model Regression
A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS')
Coclustering Package for Binary, Categorical, Contingency and Continuous Data-Sets
parallel DEMC with several parameter blocks
blockmatrix: Tools to solve algebraic systems with partitioned matrices
Creates strings that show a text message in 8 by 8 block letters
An R package for generalized and classical blockmodeling of valued networks
An R package for Generalized and classical blockmodeling of valued networks
Latent and Stochastic Block Model Estimation by a 'V-EM' Algorithm
Block Rearrangement Algorithm
Randomization for block random clinical trials
Randomization for block random clinical trials
Nested and Crossed Block Designs for Unstructured and Factorial Treatment Sets
Two Dimensional Change-Points Detection
Block, Assign, and Diagnose Potential Interference in Randomized Experiments
Statistical Comparisons with Distance-Function Based Permutation Tests
Tools for Transaction-Oriented Trading Systems Development
Bayesian Linear Regression
Bayesian Linear Regression
Request Data from the U.S. Bureau of Labor Statistics API
An API Wrapper for the Bureau of Labor Statistics (BLS)
Recurrent events with BLUPs
Bayesian Model Averaging
Benchmark dose analysis for dose-response data
Mediation analysis with missing data using bootstrap
Mediation analysis with missing data using bootstrap
Bayesian Meta-Analysis and Meta-Regression
PCM for Hybridization
Bayesian Sampling for Stick-Breaking Mixtures
Bayesian Estimation for Finite Mixture of Distributions
MCMC diagnostics package
Bayesian Multilevel Mediation
Bayesian multinomial mixture
The pseudo-likelihood method for pairwise binary markov networks
Read Windows Bitmap (BMP) images
Bundle Methods for Regularized Risk Minimization Package
Bayesian Models for Rare Variant Association Analysis
Bayesian Models for Rare Variant Association Analysis
Bayesian Model Averaging Library
Data Generator based on Bayesian Network Model
Bayesian Network Structure Learning, Parameter Learning and Inference
Bagged k-Nearest Neighbors Survival Prediction
Bayesian Estimation for Normal Heteroscedastic Nonlinear Regression Models
Bayesian Networks & Path Analysis
Ferguson-Klass Type Algorithm for Posterior Normalized Random Measures
Bayesian Nonparametric Model for Clustering with Mixed Scale Variables
Bayesian monotonic nonparametric regression
A Bayesian Nonparametric Algorithm for Time Series Clustering
Bayesian Non- and Semi-Parametric Model Fitting
Spatial Implementation of Bayesian Networks and Mapping
Bayesian Network Structure Learning from Data with Missing Values
Bayesian Output Analysis Program (BOA) for MCMC
Board Games and Tools for Building Board Games
Profilling of Peripheral Blood Mononuclear Cells using CyTOF
Bacterium and Virus Analysis of Orthologous Groups (BOG) is a Package for Identifying Differentially Regulated Genes in the Light of Gene Functions
Interface to the Boilerpipe Java Library
Interface to the boilerpipe Java library by Christian Kohlschutter (http://code.google.com/p/boilerpipe/)
Bayesian Optimal INterval (BOIN) Design for Single-Agent and Drug- Combination Phase I Clinical Trials
Interface to Bold Systems 'API'
Functions for Elementary Bayesian Inference
Bolstad functions
BOM data getter
An Improved Multiple Testing Procedure for Controlling False Discovery Rates
Authoring Books and Technical Documents with R Markdown
Boolean Binary Response Models
Optimal Estimation of Partially Observed Boolean Dynamical Systems
Construction, Simulation and Analysis of Boolean Networks
Bayesian Object Oriented Modeling
MCMC for Spike and Slab Regression
The Boost C++ Libraries
Boosted Multivariate Trees for Longitudinal Data
A modular framework to bag or boost any estimation procedure.
Optimized GWAS cohort subset selection for resequencing studies
Bootstrap Functions (Originally by Angelo Canty for S)
Function to find nonparametric BCa intervals
Bootstrap Effect Sizes
Derive Robust Feature Sets for Two or Multiclass Classification Problems
Bootstrapped Confidence Intervals for (Negative) Likelihood Ratio Tests
Bootstrap-MRMR Technique for Informative Gene Selection
Bootstrap Methods for Various Network Estimation Routines
Bootstrap Prediction Intervals and Bias-Corrected Forecasting
Bootstrapped Response and Correlation Functions
A Bootstrap Test for the Probability of Ruin in the Classical Risk Process
Testing equality of spectral densities
Bootstrap Subsamplings of Sparse Partial Least Squares - Discriminant Analysis for Classification and Signature Identification
Bootstrap stepAIC
Functions for the Book "An Introduction to the Bootstrap"
Fast, Exact Bootstrap Principal Component Analysis for High Dimensional Data
Robust Performance Hypothesis Testing with the Sharpe Ratio
Bootstrap Tolerance Levels for Credit Scoring Validation Statistics
Test Stationarity using Bootstrap Wavelet Packet Tests
Bayesian Ordination and Regression AnaLysis
Wrapper Algorithm for All Relevant Feature Selection
Model-based clustering of multivariate ordinal data relying on a stochastic binary search algorithm
a Bunch of Structure and Sequence Analysis
Convert Binary Species Range Maps into Continuous Surfaces Based on Distance to Range Edge
Bounds for causal and sufficient-cause interactions
Analytic Solutions for (ground-water) Boussinesq Equation
Downloads Box Office Information for Given Dates (How Much Each Movie Earned in Theaters)
Double Box Plot for Two-Axes Correlation
Interface for the 'Box.com API'
Basic Pattern Analysis
Biplot of Multivariate Data Based on Principal Components Analysis
Beta Product Confidence Procedure for Right Censored Data
bPeaks: an intuitive peak-calling strategy to detect transcription factor binding sites from ChIP-seq data in small eukaryotic genomes
Bayesian Phylogeographic and Ecological Clustering
Back-Projected Kernel Density Estimation
Back-Projected Kernel Density Estimation
Basic functions for panel data analysis
Computations Around Bayesian Predictive Power
Model higher-order methylation profiles
Cumulative incidence models for twin data
Bayesian QTL Mapping Toolkit
Bradley-Terry Models
Visualize Combined Action Response Surfaces and Report BRAID Analyses
Fitting Dose Response with the BRAID Combined Action Model
Improved Access for Blind Users
Baffling Recursive Algorithm for Isotope distributioN calculations
Graph Theory Analysis of Brain MRI Data
Helper functions to misc3d and rgl packages for brain imaging
query gene expression data and plots from BrainStars (B*)
Basic wavelet analysis of multivariate time series with a visualisation and parametrisation using graph theory.
Simulation and Estimation for Branching Processes
Bootstrapped Robustness Assessment for Qualitative Comparative Analysis
Bayesian Recurrent Event Analysis
SICM pipette tip geometry estimation
Species Richness Estimation and Modeling
An R Package for Multiple Break-Point Detection via the Cross-Entropy Method
Breakpoint detection error
Functions for wind resource assessment
Templating Framework for Report Generation
Templating Framework for Report Generation
Extracting Usable Data from the Grad Cafe Results Search
Bias reduction in binomial-response generalized linear models.
Bias reduction in binomial-response generalized linear models.
Brier score decomposition of probabilistic forecasts for binary events
Brier score decomposition of probabilistic forecasts for binary events
Bayesian Robust Inference for Differential Gene Expression
Code for using BridgeDb identifier mapping framework from within R
An Implementation of the Bridge Distribution with Logit-Link as in Wang and Louis (2003)
Genome-Wide RNA Degradation Analysis Using BRIC-Seq Data
Biological Risk Assessment
Binary Regression Model
Bayesian Regression Models using Stan
Bayesian Regularization for Feed-Forward Neural Networks
Very large numbers in R
Karl Broman's R Code
Convert Statistical Analysis Objects into Tidy Data Frames
A Compression Format Optimized for the Web
BrowserViz: interactive R/browser graphics using websockets and JSON
BrowserVizDemo: How to subclass BrowserViz
Bayesian Inference on the Ratio of Two Poisson Rates
Fetch 'Phylogenies' from Many Sources
Interface to the 'OpenBUGS' MCMC Software
Statistical methods for safety assessment in agricultural field trials
Bayesian State-Space Models for Animal Movement
Basic Statistics and Data Analysis
Binary Search Tools
Infrastructure for Biostrings-based genome data packages and support for efficient SNP representation
Bayesian Sparse Group Selection
Bayesian Survival Model with Lasso Shrinkage Using Generalized Weibull Regression
Nonparametric Smoothing of the Hazard Function
Bayes Screening and Model Discrimination
Bayesian Spectral Inference
Adds Functionality to the R Markdown + Shiny Bootstrap Framework
bspmma: Bayesian Semiparametric Models for Meta-Analysis
Bayesian Simultaneous Quantile Regression
Asymptotic Covariance Matrices of Some BSS Mixing and Unmixing Matrix Estimates
Analyze, manage and store bisulfite sequencing data
Birnbaum-Saunders Model Based on Skew-Normal Distribution
Gradient Boosting
Bayesian Structural Time Series
Beyond the Border
Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood
Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood
Estimates univariate function via Bayesian trend filtering
Modelling Heterogeneity in Paired Comparison Data
Training and Analysing Asynchronous Boolean Models
Bayesian Time-Strat. Population Analysis
Utilities for Simple Back Testing of Trading Strategies
Implementing Buy 'Til You Die Models
Probabilistic Models for Assessing and Predicting your Customer Base
BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality in somatic mosaicism using next generation sequencing data
Bias and Uncertainty Corrected Sample Size
A matrix data storage object held in temporary files
Microarray Data related methods that utlize BufferedMatrix objects
Collection of BUGS examples
Buckley-James Regression for Survival Data with High-Dimensional Covariates
Bump Hunter
Analyze Bunching in a Kink or Notch Setting
All Final Tables of the Bundesliga
Advanced Fire History Analysis in R
Burns Statistics Financial
Burns Statistics Miscellaneous
Markov model for bursty behavior in streams
Gene network reconstruction
Generalized Pairwise Comparisons
Bayesian Analysis of a Vector Autoregressive Model with Stochastic Volatility and Time-Varying Parameters
A Simple alternative to proportional Venn diagrams
The Stark-Parker algorithm for bounded-variable least squares
Solvers for Boundary Value Problems of Differential Equations
Solvers for Boundary Value Problems of Differential Equations
Bayesian Variant Selection: Bayesian Model Uncertainty Techniques for Genetic Association Studies
Integrative Bayesian variable selection with flexible priors
Bagging Whole-Genome Regression
Baumgartner Weiss Schindler Test of Equal Distributions
Statistics About Bytes Contained in a File as a Circle Plot
Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models
Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models
Methods for Detecting Safety Signals in Clinical Trials Using Body-Systems (System Organ Classes)
Infering large-scale gene networks with C3NET
Infering large-scale gene networks with C3NET
C5.0 Decision Trees and Rule-Based Models
C5.0 Decision Trees and Rule-Based Models
Simple, Multiple and Joint Correspondence Analysis
Simple, Multiple and Joint Correspondence Analysis
A CanIStream.It API Wrapper
Bootstrap Confidence Regions for Correspondence Analysis.
Classification Accuracy and Consistency under Item Response Theory
Conditional Density Estimation Network Construction and Evaluation
This package performs the CADF unit root test proposed in Hansen (1995).
Provides a GUI to Several Statistical Methods
Encrypts and Decrypts Strings
Chromosmal Aberrations Finder in Expression data
Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
Conditional Akaike information criterion for lme4
R graphics device using cairo graphics library for creating high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG, PostScript) and display (X11 and Win32) output
Embeddable Cairo Graphics Device Driver
Calculations for All Common Subsequences
Calculator for LR Fuzzy Numbers
Coarse Approximation Linear Function
Calibration model for estimating absolute expression levels from microarray data
Generate ICD10, Read and OPCS codelists
Data Management Tools for CALIBER Datasets
Extract drug dose from unstructured dosage text
R interface to the Freetext Matching Algorithm
Multiple imputation using MICE and Random Forest
Multiple imputation using MICE and Random Forest
Statistical models and tools for assay calibration
Automated Parameter Estimation for Complex (Ecological) Models
Calibration of Scatterplot and Biplot Axes
Weighting and Estimation for Panel Data with Non-Response
Bayesian calibration of complex computer codes
Call R from R
Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation
Causal Additive Model (CAM)
Finite Mixture Models and Meta-Analysis Tools - Based on C.A.MAN
Finite Mixture Models and Meta-Analysis Tools - Based on C.A.MAN
Calibrated Machine Learning
Collection of annotation related methods for mass spectrometry data
Trajectory Analysis
Client for CAMS Radiation Service
Camera Trap Data Management and Preparation of Occupancy and Spatial Capture-Recapture Analyses
A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC.
Development and validation of diagnostic tests from high-dimensional molecular data
Analyses of Cancer Gene Interaction
An R interface for computational modeling of tumor progression
Cancer mutation analysis
Cancer subtypes identification, validation and visualization based on genomic data
Estimation of Temporal Ordering of Cancer Abnormalities
Perform Chromosomal Ancestry Differences (CAnD) Analyses
Provides a measure of the average connectedness among as set of candidate genes and a network-specific distribution of the connectedness of random gene pairs for an arbitrary network of pair wise interactions.
Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis
Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis
Candlestick Pattern Recognition
Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing
Directly Extracts Complete CANSIM Data Tables
Import, manipulate and analyze data from the Massachusetts CANS tool
Visualization of multi-dimentional cancer genomics data
Combined Analysis of Pleiotropy and Epistasis
Comparative Analyses of Phylogenetics and Evolution in R
Companion Animal Population Management
Numbers Figures and Creates Simple Captions
Client for the Captricity API
CAlibrating Penalities Using Slope HEuristics
Estimates population size from non-invasive sampling
Companion to Applied Regression
Companion to Applied Regression
Spatial Generalised Linear Mixed Models for Areal Unit Data
Data Used in the Vignettes Accompanying the CARBayes and CARBayesST Packages
Spatio-Temporal Generalised Linear Mixed Models for Areal Unit Data
Estimation of the Number of Fatalities from Carcass Searches
Identification of Cardinal Dates in Ecological Time Series
Identification of Cardinal Dates in Ecological Time Series
A mass spectrometry imaging toolbox for statistical analysis
Cardiovascular Safety Exposure-Response Modeling in Early-Phase Clinical Studies
High-Dimensional Regression and CAR Score Variable Selection
Statistical package for population size estimation in capture-recapture models.
Classification and Regression Training
Classification and Regression Training
Ensembles of Caret Models
LaTeX Classes for the caret Package
Estimation of caribou abundance based on large scale aggregations monitored by radio telemetry
Functions for Statistics Classes at Carleton College
Ecological Quality Ratios Calculation and Plot
A Collection of Database, Data Structure, Visualization, and Utility Functions for R
Build Common Tables of Summary Statistics for Reports
CRISPR AnalyzeR for Pooled CRISPR Screens
Reparameterized and marginalized posterior sampling for conditional autoregressive models, OpenCL implementation
Create Cartograms with R
Thematic Cartography
Censored Autoregressive Model with Exogenous Covariates
Sries Temporelles Avec R
Identify Similar Cases for Qualitative Case Studies
Characterization of Alternative Splicing based on Paired-End Reads
Cellular Automata for Spatial Pressure in R
Analysis of categorical-variable datasets with missing values
Categorical Data Analysis Program Package
Categorical Data
Fishery Stock Assessment by Generalized Depletion Models
High Dimensional Factor Analysis and Confounder Adjusted Testing and Estimation
Category Analysis
Meta-analysis of high-throughput experiments using feature annotations
Fits a Catenary to Given Points
Encoders for Categorical Variables
Categorical Variable Selection Methods
Community Assembly by Traits: Individuals and Beyond
An R Package for Simulating IRT-Based Computerized Adaptive Tests
Chronomics Analysis Toolkit (CAT): Analyze Periodicity
Formal Modeling for Psychology
Formal Modeling for Psychology
Categorical Bayesian Network Inference
Tools: moving window statistics, GIF, Base64, ROC AUC, etc.
Generation of IRT Response Patterns under Computerized Adaptive Testing
Special models for categorical variables
Tools for Estimating Causal Dose Response Functions
Deriving Expressions of Joint Interventional Distributions and Transport Formulas in Causal Models
Methods for Estimating Causal Effects from Observational Data
Estimation of Causal Effects with Generalized Additive Models
Causal Reasoning Methods
Selection Bias Approach to Sensitivity Analysis for Causal Effects
Analysis utilities for binary classification and Causata users.
Correspondence Analysis Variants
Clustering for Business Analytics
Clustering of Multivariate Binary Data with Dimension Reduction via L1-Regularized Likelihood Maximization
Claudia's collection of miscellaneous functions
Collection of "combined" models: PCA-LDA, PLS-LDA, etc.
Covariate Balancing Propensity Score
Statistics Netherlands (CBS) Open Data API Client
Canonical correlation analysis
Bayesian Canonical Correlation Analysis and Group Factor Analysis
(Robust) Canonical Correlation Analysis via Projection Pursuit
Class Cover Catch Digraphs
Developing a core collections
Cone Constrained Convex Problems
Cone Constrained Convex Problems
Concordance Correlation Coefficient for Repeated (and Non-Repeated) Measures
Combined Cluster and Discriminant Analysis
CCDr Algorithm for Learning Sparse Gaussian Bayesian Networks
Conditional Correlation GARCH models
Conditional Correlation GARCH Models
Cox Model for Case-Cohort Data with Stratified Subcohort-Selection
Convex Clustering Methods and Clustering Indexes
Correlation classification method (CCM)
Combination Connectivity Mapping
Simulate Congruence Class Model for Networks
Significance Tests for Canonical Correlation Analysis (CCA)
One and two locus GWAS of binary phenotype with case-control-population design
PROMISE analysis with Canonical Correlation for Two Forms of High Dimensional Genetic Data
ccrepe_and_nc.score
Consensus Analysis, Model-Based Clustering, and Cultural Consensus Theory Applications
Coupled-Dipole Approximation for Electromagnetic Scattering by Three-Dimensional Clusters of Sub-Wavelength Particles
Reading and Writing Constant DataBases
Reading and Writing Constant DataBases
Retrieve U.S. Flu Season Data from the CDC FluView Portal
Conditional Distance Correlation and Its Related Feature Screening Method
Evaluate Differentially Private Algorithms for Publishing Cumulative Distribution Functions
Quantile Regression for Random Variables on the Unit Interval
Statistical downscaling through CDF-transform
Coordinate Descent Algorithms for Lasso Penalized L1, L2, and Logistic Regression
Tools to Download and Work with USDA Cropscape Data
Cognitive Diagnosis Modeling
Components of Canadian Monetary and Credit Aggregates
R Functions to Model CDOM Spectra
Phylogenetically Classifies Retention Mechanisms of Duplicate Genes from Gene Expression Data
Constrained Dual Scaling for Detecting Response Styles
cdtRefficient
cdtRggplot2
cdtRintroduction
cdtRmodelling
cdtRprogramming
Statistical Inference of C- And D-Vine Copulas
Cross-Entropy Clustering
Benchmark for the CEC 2005 Special Session on Real-Parameter Optimization
Benchmark functions for the Special Session and Competition on Real-Parameter Single Objective Optimization at CEC-2013
Combinatorial Efficient Global Optimization
Collection of Common Astronomical Conversion Routines and Functions
Fitting cell population growth models
Analysis of cell-based screens
Analysis of cell-based screens - revised version of cellHTS
Quality Control for Single-Cell RNA-seq Data
Predict genes expressed selectively in specific cell types
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.
Translate Spreadsheet Cell Ranges to Rows and Columns
Inference and visualisation of Single-Cell RNA-seq data as a hierarchical tree structure
One-Dimensional Cellular Automata
Functions to fit cell volume distributions and thereby estimate cell growth rates and division times
Analyzing Data with Cellwise Outliers
Coarsened Exact Matching
Conditional Expectation Manifolds
Censored Linear Mixture Regression Models
censored NID samples
Estimate Parameter of Bivariate Copula
Censored Regression (Tobit) Models
Censored Regression (Tobit) Models
Fits Normal and Student-t Censored Regression Model
Censored Spatial Models
Changes United States Census Geographic Code into Name of Location
Collect Data from the Census API
Tools to Query the 'Censys' API
CENTIPEDE learns a DNaseI footprint of a transcription factor and predicts its binding sites
Censored time series
Cross-Entropy R Package for Optimization
Centrality-based pathway enrichment
Discriminant Analysis of Time Series in the Presence of Within-Group Spectral Variability
Context Driven Exploratory Projection Pursuit
Outlier Detection Using the Iterated RMCD Method of Cerioli (2010)
Covariance Estimation Regularized by Nuclear Norm Penalties
An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates
Analysis of Configural Frequencies (CFA)
Statistical analysis for the Colony Formation Assay
Cause-Specific Framework for Competing-Risk Analysis
Estimate quantiles using any order Cornish-Fisher expansion
Canadian Forest Fire Danger Rating System
Canadian Forest Fire Danger Rating System
Compensatory Fuzzy Logic
Compare Groups, Analytically and Graphically
Constrained Generalized Additive Model
Calculate AUC-type measure when gold standard is continuous and the corresponding optimal linear combination of variables with respect to it.
R-Based API for Accessing the MSKCC Cancer Genomics Data Server (CGDS)
An R package for analysis of case-control studies in genetic epidemiology
Parallel genomic evaluations
Continuous Generalized Gradient Descent
Microarray CGH analysis using the Smith-Waterman algorithm
CGHbase: Base functions and classes for arrayCGH data analysis.
Calling aberrations for array CGH tumor profiles.
Detecting hot spot on CGH array data with fused lasso regression.
Find chromosome regions showing common gains/losses
Normalization of array CGH data with imbalanced aberrations.
Dimension Reduction for Array CGH Data with Minimal Information Loss.
Segmentation Methods for Array CGH Analysis
Segmentation methods for array CGH analysis
Various functions useful in computational genetics, e.g. GWAS.
Composite Gaussian process models
Miscellaneous Tools
CHi-squared Automated Interaction Detection
Statistical Methods and Models for Claims Reserving in General Insurance
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
Methods for Changepoint Detection
Methods for Nonparametric Changepoint Detection
Change Point Estimation for Clustered Signals
Markov Model for the Online Multi-Channel Attribution Problem
Shiny Web Application for the Multichannel Attribution Problem
0-1 Test for Chaos
Chaos Game
Charge Transfer Rates and Charge Carrier Mobilities
Analysis of DNA methylation data from CHARM microarrays
An example dataset for use with the charm package
Clonal Heterogeneity Analysis Tool
Canadian Historical Climate Network
Discrete Linear Chebyshev Approximation
Multivariate Chebyshev Interpolation
Calculate and verify check digits
Fast and Versatile Argument Checks
Install Packages from Snapshots on the Checkpoint Server for Reproducibility
Analysis and Visualisation of Ecological Communities
Calibration Functions for Analytical Chemistry
R interface to a subset of OpenBabel functionalities
Cheminformatics Toolkit for R
Multivariate Statistical Analysis in Chemometrics
Chemometrics with R - Multivariate Data Analysis in the Natural Sciences and Life Sciences
Data for package ChemometricsWithR
Exploratory Chemometrics for Spectroscopy
Multiple Testing Methods for Exploratory Research
Closest History Flow Field Forecasting for Bivariate Time Series
The Chi Distribution
Partitioning Chi-Squared and Tau Index for Three-Way Contingency Tables
CHiCAGO: Capture Hi-C Analysis of Genomic Organization
Calculation of standard deviation scores adduced from different growth standards
Statistical Methods for Phenology Analysis in Temperate Fruit Trees
A package for secondary analysis of fusion products
Miscellaneous Tools for Chinese Text Mining and More
Quantitative comparison of multiple ChIP-seq datasets
Gene Set Enrichment For ChIP-seq Peak Data
Toolkit of Helper Functions to Pre-Process Amplification Data
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges
Quality metrics for ChIPseq data
ChIPseeker for ChIP peak Annotation, Comparison, and Visualization
chipseq: A package for analyzing chipseq data
Identifying Protein Binding Sites in High-Throughput Sequencing Data
Simulation of ChIP-seq experiments
Nonparametric Methods for Identifying Differential Enrichment Regions with ChIP-Seq Data
ChIPXpress: enhanced transcription factor target gene identification from ChIP-seq and ChIP-chip data using publicly available gene expression profiles
Change Point Regression
Chemical Thermodynamics and Activity Diagrams
Chemical Thermodynamics and Activity Diagrams
Design Functions for Choice Studies
Choice Modeling in R
Choplump tests
The snp.matrix and X.snp.matrix classes
The Chopthin Resampler
Chordalysis R Package
Estimation in Respondent Driven Samples
Simplify the Creation of Choropleth Maps in R
Contains an Administrative-Level-1 Map of the World
Contains Maps Used by the 'choroplethr' Package
chroGPS: visualizing the epigenome
What the package does (short line)
chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion.
Interface to Chromosome Counts Database API
Heat map plotting by genome coordinate
Analysis of chromosomal interactions data (correction, segmentation and comparison)
Global visualization tool of genomic data
Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data
Chronological Objects which can Handle Dates and Times
CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis
Choi and Hall Style Data Sharpening
Chunkwise Text-File Processing for 'dplyr'
Isotope Ratio Meta-Analysis
Generative Models for Complex Networks with Conditionally Independent Dyadic Structure
Weighted summary of cumulative incidence functions
Causal Inference for Neuroscience
Chromosome Instability Index
Basic tools for chemoinformatics
Curculionidae INstar IDentification
Co-Information based N-Order Epistasis Detector and Visualizer
Circumplex models Estimation
Circular Visualization
Statistical Analysis of Circular Data using Nonnegative Trigonometric Sums (NNTS) Models
Detection of Outliers in Circular-Circular Regression
Circular Statistics, from "Topics in circular Statistics" (2001)
Circular Statistics
Circular Statistics
Choice Item Response Theory
Visualization and management of the protein-protein interaction networks.
Causal Inference Test
CITation ANalysis Toolpack
CITation ANalysis toolpack
CIT Breast Cancer Molecular SubTypes Prediction
CIT Colon Cancer Molecular SubTypes Prediction
An RStudio Addin to Insert BibTex Citation in Rmarkdown Documents
Computation, comparison and sensitivity analysis of composite indicators of performance
'RStudio' Add-in to Insert Markdown Citations
Visualization of structure and contents of a database
AMCE Estimator for Conjoint Experiments
Client for the Comprehensive Knowledge Archive Network ('CKAN') 'API'
Optimal and Fast Univariate Clustering
C++ implementations of phylogenetic cladogenesis calculations
An unsupervised non hierarchical clustering algorithm handling biological data
Clustering modal multi valued symbolic data
Time Series Modeling for Climate Change Proxies
Access to Clarifai API
Functions for Classification
Classes and Methods for "Class Comparison" Problems on Microarrays
Classes and Methods for "Class Discovery" with Microarrays or Proteomics
Construct Graphs of S4 Class Hierarchies
Generates a Visualization of Classifier Performance as a Grid of Diagnostic Plots
Explore classification models in high dimensions
Classification Accuracy and Consistency under IRT models.
A framework for two-class classification problems, with applications to differential variability and differential distribution testing
Choose Univariate Class Intervals
Choose Univariate Class Intervals
Classes and Methods for "Class Prediction" with Microarrays or Proteomics
Classifies RNA Structure Change in Chemical Mapping Data
Robust multivariate classification using highly optimised SVM ensembles
The Critical Care Clinical Data Processing Tools
Cleaning Geometries from Spatial Objects
A Tidy Data Model for Natural Language Processing
Helps You to Code Cleaner
This package classifies putative polyadenylation sites as true or false/internally oligodT primed
Cleavage of Polypeptide Sequences
Simultaneous Variables Clustering and Regression
Conditioned Latin Hypercube Sampling
Model-Based Clustering of Categorical Sequences
Fix Data and Create Report Tables from Different Objects
Analyzes Clickstreams Based on Markov Chains
Easily Download and Visualise Climate Data from CliFlo
Censoring Data and Likelihood-Based Correlation Estimation
Climate Tools (Series Homogenization and Derived Products)
Calculate Average Minimal Depth of a Maximal Subtree for 'ranger' Package Forests
Climate Classification According to Several Indices
PCIC Implementation of Climdex Routines
Climate Downscaling Library for Daily Climate Model Output
Constrained L1-minimization for Inverse (covariance) Matrix Estimation
Tools for Analyzing Climate Extremes
Crowdsourcing climate-smart agriculture
R functions for working with station and gridded climate data.
Statistical Methods for Climate Sciences
Statistical Methods for Climate Sciences
Climate Window Analysis
Clinical Trial Design and Data Analysis Functions
Clinical Significance Functions
Clinical Utility of DNA Testing
A package for the clinical proteomic profiling data analysis
Gene Set Analysis Exploiting Pathway Topology
Read and Write from the System Clipboard
Unicode Symbols at the R Prompt
Constrained Inference for Linear Mixed Effects Models
Boosting Conditional Logit Model
Fitting exact conditional logistic regression with lasso and elastic net penalties.
Lasso Estimation of Conditional Logistic Regression Models for Matched Case-Control Studies
Infers clonal composition of a tumor
Clonality testing
High throughput analysis of T cell antigen receptor sequences
Cloud Utilization Plots
R Interface to C API of COIN-OR Clp
A smoothing Newton method SOCP solver
Classification by local similarity threshold
Tools for performing taxonomic assignment.
Central Limit Theorem Experiments (Theoretical and Simulation)
Cluster-Robust (Sandwich) Variance Estimators with Small-Sample Corrections
Cluster Ensembles
CLUster Evaluation (CLUE)
Clustering Method Based on Local
Clustering and Visualization of Mixed-Type Data
Wilcoxon Rank Sum Test for Clustered Data
Statistical Methods for Analyzing Clustered Matched Pair Data
Clustering Comparison Package
Clustering Discrete Distributions
"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.
Clustering Indices
Cluster Analysis Data Sets
Location and Visualization of Clustered Somatic Mutations
Compare clusterings for single-cell sequencing
Explore clustering interactively using R and GGobi
Random Cluster Generation (with Specified Degree of Separation)
Identifying clusters in genomics data by recursive partitioning
Clustering Genotypes in Haplotypes
This package performs clustering for categorical dataset.
Optimal Distance-Based Clustering for Multidimensional Data with Sequential Constraint
Integrative Clustering for Heterogeneous Biomedical Datasets
Fast agglomerative convex clustering, original Rcpp implementation
Power calculations for cluster-randomized and cluster-randomized crossover trials
statistical analysis and visualization of functional profiles for genes and gene clusters
Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans and K-Medoids Clustering
Rank Tests for Clustered Data
Reproducibility of gene expression clusters
Calculate Cluster-Robust p-Values and Confidence Intervals
The ClusterSignificance package provides tools to assess if clusters have a separation different from random or permuted data
Searching for Optimal Clustering Procedure for a Data Set
Compute cluster stability scores for microarray data
Assessment of Stability of Individual Objects or Clusters in Partitioning Solutions
Check the Clustering Tendency
Evaluation of Clustering Algorithms
Clustering of Observations with Geographical Constraints
Model Based Clustering for Mixed Data
k-Prototypes Clustering for Mixed Variable-Type Data
Variable Selection in Clustering by Mixture Models for Discrete Data
Clustering of variables
Easy Interface for Clustering a Set of Documents and Exploring Group- Based Patterns
Methods for Joint Dimension Reduction and Clustering
Significant Cluster Analysis
Clustering of Variables Around Latent Variables
Variable Selection for Model-Based Clustering
Cluster Validation Techniques
Validation of Clustering Results
Synthesis of microarray-based classification
Covariance Matrix Adapting Evolutionary Strategy
Covariance Matrix Adapting Evolutionary Strategy
Covariance Matrix Adaptation Evolution Strategy
Cronbach-Mesbah Curve
Collective matrix factorization
Categorical Marginal Models
Computational Methods for Numerical Analysis
cMonkey integrated biclustering algorithm
Control Charts for Conway-Maxwell-Poisson Distribution
Circle Manhattan Plot
Subdistribution Analysis of Competing Risks
Analysis of Competing Risks Using Quantile Regressions
Multistage Competing Risks Analysis for Web data
Fit Capture-Mark-Recapture models in continuous time.
Misc Functions of the Center for the Mathematical Research
Tools for CM SAF NetCDF Data
The Complex Multivariate Gaussian Distribution
A Package for Coincidence Analysis (CNA)
Methods for reading CNAG files
A normalization method for Copy Number Aberration in cancer samples
Canonical Non-Symmetrical Correspondence Analysis in R
CNE Detection and Visualization
same Chromosome N-loci F2 frequencies
same Chromosome N-loci F2 frequencies, with IBD tracing
cn.FARMS - factor analysis for copy number estimation
Maximum Likelihood Estimation of a Log-Concave Density Function
cn.mops - Mixture of Poissons for CNV detection in NGS data
Copy Numbers of Genes in prokaryotes
Add-on to CellNOptR: Discretized time treatments
Integration of CellNOptR to add missing links
Addon to CellNOptR: Fuzzy Logic
ODE add-on to CellNOptR
Bayesian mixture models for copy number polymorphisms
Pre-process DNA Copy Number (CN) Data for Detection of CN Events
Convert segment data into a region by sample matrix to allow for other high level computational analyses.
Association Analysis of CNV Data and Imputed SNPs
Example data sets for association analysis of CNV data
Gene Set Analysis of (Rare) Copy Number Variants
Reliable CNV detection in targeted sequencing applications
CNVrd2: a read depth-based method to detect and genotype complex common copy number variants from next generation sequencing data.
A package to test genetic association with CNV data
A Framework for Coalescent Simulation
MCMC Algorithms for the Coalescent
A pedagogical tool to teach the basics of coalescent theory
A Collection of Functions to Help with Analysis of Coarsely Observed Data
Covariate Balance Tables and Plots
Finding Co-occuring motifs of transcription factor binding sites
Nonlinear Aggregation of Predictors
Constrained B-Splines (Sparse Matrix Based)
Constrained B-Splines (Sparse Matrix Based)
Constrained B-splines -- outdated 1999 version
Different test statistics based on co-citation.
Copula Based Cluster Analysis
COmbat CO-Normalization Using conTrols (COCONUT)
Comparing Correlations
Extracts Shared Variation in Collections of Datasets Using Regression Models
Co-Correspondence Analysis Methods
Co-correspondence analysis methods
Statistical Comparisons of Two or more Alpha Coefficients
Output Analysis and Diagnostics for MCMC
Markov chain Monte Carlo burn-in based on "bridge" statistics
Automated C Code Generation for Use with the 'deSolve' and 'bvpSolve' Packages
Management of Survey Data
Manipulation of Codelink microarray data
Multiscale Codependence Analysis
Code Analysis Tools for R
A Normalization and Copy Number Variation Detection Method for Whole Exome Sequencing
Alternative Factor Coding Matrices for Linear Model Formulae
Community Dynamics Metrics
Robust Cronbach's alpha with missing and non-normal data
Robust Coefficient Alpha and Omega with Missing and Non-Normal Data
Plots Coefficients from Fitted Models
Coenocline Simulation
Gradient-Based Coenospace Vegetation Simulator
Species coexistence modeling and analysis
Consensus Optimization Fuzzy Clustering
Generate Cofeature Matrices
Complete Functional Regulation Analysis
Coordinated Gene Activity in Pattern Sets
Simulation and inferenc for COGARCH(1,1) processes
Portfolio selection with Multivariate COGARCH(p,q) models
co-expressed gene-set enrichment analysis
cancer outlier Gene Profile Sets
CpG Island Analysis Pipeline for Illumina Methylation Array and Targeted BS-Seq Data
Copula Based Imputation Method
Conditional Inference Procedures in a Permutation Test Framework
Conditional Inference Procedures in a Permutation Test Framework
Simultaneous Confidence Interval for Multinomial Proportion
Consistent Monitoring of Stationarity and Cointegrating Relationships
Parameter Estimation and Inference in a Cointegrating Regression
Count Longitudinal Data
Constrained Optimization on Linear Function
Generalized CDH (GCDH) Analysis
Collocation Inference for Dynamic Systems
Auxiliary Package for Package 'CollapsABEL'
Colocalisation tests of two genetic traits
Implementation of Colored Independent Component Analysis and Spatial Colored Independent Component Analysis
Plot and add custom coloring to Venn diagrams for 2-dimensional, 3-dimensional and 4-dimensional data.
Colorful Hierarchical Clustering Dendrograms
Color Palettes using Colormaps Node Module
Color Palettes Generator
A 'ggplot2' Extension to Visualize Two Variables per Color Aesthetic Through Color Space Projections
Color Palettes for EPL, MLB, NBA, NHL, and NFL Teams
Builds color tables
Color Science Methods and Data
Color Science Methods and Data
Color Space Manipulation
Color Space Manipulation
Color Calculations with Emphasis on Spectral Data
Tools for colors in a Hue-Saturation-Value (HSV) color model
R Client for the COLOURlovers API
A Colour Picker Tool for Shiny and for Selecting Colours in Plots
Data-driven colour scheme mappers
Colour Vision Models
Functions to Select and Rename Data
Analysis of Concept Maps
A Combined Association Test for Genes using Summary Statistics
Synergy/Antagonism Analyses of Drug Combinations
combinatorics utilities
Game-Theoretic Probability Combination
Estimation of Optimal Portfolio Weights by Combining Simple Portfolio Strategies
Combine a Vector of Correlated p-values
Construction Methods of some Series of PBIB Designs
Combinatorics Iterators
Combined Model Selection Criteria
Community climate statistics.
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns
Exact Test from the Combinations of Mutually Exclusive Alterations (CoMEt) Algorithm
Functions for Thermal Comfort Research
Computational Methods for Immune Cell-Type Subsets
Command pattern in R
Command pattern in R
Community Ecology Analyses
Community Ecology Analyses
Print Nicely Formatted Comments for Use in Script Files
Useful libraries for building a Java based GUI under R
Useful libraries for building a Java based GUI under R
High Performance CommonMark and Github Markdown Rendering in R
Extract and plot common trends from a cointegration system. Calculate P-value for Johansen Statistics.
Comparative Phylogeographic Analysis using the Community Tree Framework
Robust Selection of Cluster Number K
Ecological Community Correlogram
This package performs clustering for categorical dataset by using a conditional modes mixture model
Compare Two ROC Curves that Intersect
Creates empty plots with compact axis notation
Comparing Objects for Differences
Compare Two Correlated C Indices with Right-censored Survival Outcome
Interface to Diverse Estimation Methods of Causal Networks
Do a Git Style Diff of the Rows Between Two Dataframes with Similar Structure
Descriptive Analysis by Groups
comparison of medical forms in CDISC ODM format
Correct for Verification Bias in Diagnostic Accuracy & Agreement
Multivariate likelihood ratio calculation and evaluation
Combinatorial Polyfunctionality Analysis of Single Cells
RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods
Event-specific incidence rates for competing risks data
Tools for Retrieval and Storage of Functional Genomics Data
Tools for computational epigenomics
Analyzing Social Hierarchies
Conway-Maxwell-Poisson GLM and distribution functions
An R pipeline for .bed file annotation, comparing GO term enrichment between gene sets and data visualisation
Complementary Hierarchical Clustering
Composite Indicators Functions
Numerically Evaluate Integrals and Derivatives (also Higher Order) of Vector- And Complex-Valued Functions
Making Complex Heatmaps
Calculate the Proportion of Permutations in Line with an Informative Hypothesis
Functions of Complex or Real Variable
Robust Linear Regression with Compositional Data as Covariates
Functions for actuarial scientists
Conway-Maxwell-Poisson Distribution
Conway-Maxwell Poisson (COM-Poisson) Regression
Compositional Data Analysis
Compositional Data Analysis
Estimation, Gene Selection, and Survival Prediction Based on the Compound Covariate Method Under the Cox Proportional Hazard Model
Computing Continuous Distributions
Distribution Function of Quadratic Forms in Normal Variables
Paired Comparison Data Analysis
Composite-Likelihood Based Analysis of Random Fields
Composite-Likelihood Based Analysis of Random Fields
Compute Effect Sizes
Continuous Associated Kernel Estimation
Human-Friendly Text from Unknown Strings
Pairwise Constraints Clustering
Optimisation with Continuous Convex Piecewise (Linear and Quadratic) Functions
Concordance
Product Concordance
Concordance Regression
Approximate conditional inference for logistic and loglinear models
Conditional Formatting in Data Frames
Parameter estimation in conditional GEE for recurrent event gap times
Computation of P Values and Bayes Factors for Conditioning Data
Standardized Conditions for R
Conditional Density Estimation with Neural Network Conditional Mixtures
Conditional Multivariate Normal Distribution
Condition-Dependent Operon Predictions
Condition Number Regularized Covariance Estimation
Estimation of the Conditional Survival Function for Ordered Multivariate Failure Time Data
Conditional Visualization for Statistical Models
Primal or Dual Cone Projections with Routines for Constrained Regression
Construction of factorial designs
Cell OrderiNg by FluorEScence Signal
Confidence Estimation of Environmental State Classifications
Manage Environment Specific Configuration Values
An Implementation of Parsing and Writing Configuration File (JSON/INI/YAML/TOML)
Conformal Prediction for Regression and Classification
Conformal mapping from a polygon to a disk
Configural Frequencies Analysis Using Log-Linear Modeling
Estimates and Bounds for the False Discovery Proportion, by Permutation
Algorithms for Fitting Circles, Ellipses and Conics Based on the Work by Prof. Nikolai Chernov
Algorithms for Fitting Circles, Ellipses and Conics Based on the Work by Prof. Nikolai Chernov
Plot Conics
Flexible Tools for Multiple Imputation
Conjoint analysis package
A package to check the cancellation axioms of conjoint measurement.
A Tool for Reproducible Research by Converting 'LaTeX' Files Generated by R Sweave to Rich Text Format Files
Tools for Working with Connectivity Data
Conover-Iman Test of Multiple Comparisons Using Rank Sums
Computation of Parameters Used in Preliminary Assessment of Conservation Status
Consonance Analysis Module
ConsensusClusterPlus
Detection of consensus regions inside a group of experiences using genomic positions and genomic ranges
Partial Linear Least-Squares Regression using Constrained Splines
Compute the Median Ranking(s) According to the Kemeny's Axiomatic Approach
Defines some physical constants and functions commonly used in optics, plasmonics.
Constrained, Covariance-Matching Constrained and Universal Point or Block Kriging
Model-Based Clustering and Classification with the Multivariate Contaminated Normal Distribution
Continued Fractions
Improves Early Build Genome Assemblies using Strand-Seq Data
Bayesian Analysis of Contingency Tables
Contouring of Non-Regular Three-Dimensional Data
A Collection of Contrast Methods
A collection of contrast methods
Median Comparison for Two-Sample Right-Censored Survival Data
Enhanced copy-number variation analysis using Illumina DNA methylation arrays
Converts dates between calendars
Seeing convergence concepts in action
Convert Microarray Data Objects
Convert Graphical Files Format
Convert Between Units
Quantifies and assesses the significance of convergent evolution
Income Concentration Analysis with Complex Survey Samples
Convex Optimization in R
Convolution-Based Nonstationary Spatial Modeling
Probabilistic Species Co-Occurrence Analysis in R
Co-Occurrence Network
Co-Operation: Fast Covariance, Correlation, and Cosine Similarity Operations
Cooperative aspects of optimal trees in weighted graphs
Functions to perform cancer outlier profile analysis.
General Bivariate Copula Theory and Many Utility Functions
Fitting the copCAR Regression Model for Discrete Areal Data
Sexual dimorphic and COPD differential analysis for gene expression and methylation.
Coverage Probability Excursion (CoPE) Sets
Sample Size Calculation for Two Primary Time-to-Event Endpoints in Clinical Trials
Multivariate Dependence with Copulas
Multivariate Dependence with Copulas
Copula Based Bivariate Beta-Binomial Model for Diagnostic Test Accuracy Studies
Estimation of Distribution Algorithms Based on Copulas
Estimation and Statistical Process Control Under Copula-Based Time Series Models
Bivariate Copula Based Regression Models
Copula Mixed Effect Models for Bivariate and Trivariate Meta-Analysis of Diagnostic Test Accuracy Studies
Computing Statistical Indices to Detect Answer Copying on Multiple-Choice Tests
Segmentation of single- and multi-track copy number data by penalized least squares regression.
R package for calling CNV from Illumina 450k methylation microarrays
Baseline Correction for Copy Number Data from Cancer Samples
Copy number information from targeted sequencing using off-target reads
Co-Ranking Matrix
Collection of Rudimentary Bioinformatics Tools
Collection of Rudimentary Bioinformatics Tools
Correlational Class Analysis
Generate correlated count random variables
Community Estimation in G-Models via CORD
OPTICS Cordillera
Cores of Recurrent Events
CoRegNet : reconstruction and integrated analysis of co-regulatory networks
Multi-Purpose Core Subset Selection
Classification, Regression and Feature Evaluation
Wrappers Around Stanford CoreNLP Tools
Core Functionality for Simulating Quantities of Interest from Generalised Linear Models
TDT for compound heterozygous and recessive models
Analysis of Binary Character Evolution
Analysis of binary character evolution
Preprocessor for Data Modeling
Record Linkage, Incorporating Imputation for Missing Agreement Patterns, and Modeling Correlation Patterns Between Fields
The Clustering of Regression Models Method
Correlation Motif Fit
Detect the correlated mutations based on selection pressure
Analysis of co-knock-down RNAi data
Efficient Estimation of Covariance and (Partial) Correlation
Statistics and data sets for corpus frequency data
Statistics and Data Sets for Corpus Frequency Data
Implementation of 2D Correlation Analysis in R
Nonparametrics with Clustered Binary and Multinomial Data
Nonparametrics with Clustered Binary and Multinomial Data
Correcting AUC for Measurement Error
Correct Overloaded Peaks from GC-APCI-MS Data
Linear Regression Based on Linear Structure Between Covariates
Functions and Methods for Correspondence Regression
A collection of functions for graphing correlation matrices
Multivariate Correlation Estimator and Statistical Inference Procedures.
Plot a Correlogram
Estimate Correlations Between Repeatedly Measured Endpoints (E.g., Reliability) Based on Linear Mixed-Effects Models
Visualization of a Correlation Matrix
Correlations in R
CorrSieve
Modeling Correlational Magnitude Transformations in Discretization Contexts
Tools for processing data after a Genome Wide Association Study
Cosegregation Analysis and Pedigree Simulation
Cosegregation Analysis and Pedigree Simulation
Co-Expression Analysis of Sequencing Data
COndition SpecIfic sub-NEtwork
Tools for estimating and predicting the cosinor model
cosmiq - COmbining Single Masses Into Quantities
Functions for cosmological distances, times, luminosities, etc.
Photometric redshift estimation using generalized linear models
cosmosR
Cost Sensitive Network for node label prediction on graphs with highly unbalanced labelings
Fit Regularized Nonparametric Regression Models Using COSSO Penalty.
Time series costationarity determination
The CosW Distribution
Consistant Cotrend Rank Selection
Connect to and Work with CouchDB Databases
Functions, Data and Code for Count Data
Clustering and Visualizing RNA-Seq Expression Data using Grade of Membership Models
Estimation and Inference Methods for Counterfactual Analysis
Flexible Univariate Count Models Based on Renewal Processes
Count Data Regression
Convert Country Names and Country Codes
Mean and Variance Modeling of Count Data
Convert from UTC to Local Time for United States Counties
Compiles Meterological Data for U.S. Counties
A Residue-Residue Contact Detecting Method
Local Polynomial Regression of State Dependent Covariates in State-Space Models
Brownian Motion Processes for 'nlme'-Models
Empirical Bayes estimate of block diagonal covariance matrices
Coverage visualization package for R
Latent Class Models with Covariate Effects on Underlying and Measured Variables
Covariance Matrix Estimation
Test Coverage for Packages
A simultaneous regression model for the mean and covariance
Multivariate Analysis of Transcriptomic Data
Robust Covariance Estimation via Nearest Neighbor Cleaning
Model-Free Covariate Selection
Model-Free Covariate Selection in High Dimensions
Tests for Determining if the Covariance Structure of 2-Dimensional Data is Separable
Computes covariance test for adaptive linear modelling
Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Messages, Warnings, Strings with Ascii Animals
Cox models by likelihood based boosting for a single survival endpoint or competing risks
Boosting Flexible Cox Models (with Time-Varying Effects)
Cox-Type Models for Interval-Censored Data
Mixed Effects Cox Models
Regularized Cox Model
Cox Regression with Firth's Penalized Likelihood
Weighted Estimation in Cox Regression
Cox Regression (Proportional Hazards Model) with Multiple Causes and Mixed Effects
Cox Models with Dynamic Ridge Penalties
Robust Estimation in Cox Model
Fitting a CoxSEI Model
Conditional Power Calculations
Calibration Plot for Proteomics
Confirmatory Path Analysis through the d-sep tests
Bayesian Meta Analysis for Studying Cross-Phenotype Genetic Associations
Methods to perform Common Principal Component Analysis (CPCA)
Concordance Probability Estimates in Survival Analysis
Association Between Methylation and a Phenotype of Interest
Parallelized Genomic Prediction and GWAS
CpG Filtering Method Based on Intra-class Correlation Coefficients
Find the maximum likelihood estimator of the shape constrained hazard baseline and the effect parameters in the Cox proportional hazards model
Clinical Pharmacokinetics
R Interface to C API of IBM ILOG CPLEX
Compound Poisson Linear Models
Sequential and Batch Change Detection Using Parametric and Nonparametric Methods
Correction of the pvalue after multiple coding
The Conditional Probability Function of a Competing Event
Gene set analysis methods for SNP association p-values that lie in genes in given gene sets
Conditional quantile normalization
Quantile, Composite Quantile Regression and Regularized Versions
Conditional Maximum Likelihood for Quadratic Exponential Models for Binary Panel Data
Power Calculation for Weighted Log-Rank Tests in Cure Rate Models
Cosmology R Analysis Code
R-script suite for automated processing of proteomic peptide lists
Probabilistic damage tolerance analysis for fatigue cracking of metallic aerospace structures
Multivariate nonparametric Cramer-Test for the two-sample-problem
Find Data-Only Packages on CRAN
Completing Ranks
Download Logs from the 'RStudio' 'CRAN' Mirror
Various R tools for http://crantastic.org/
Fit Continuous-Time Correlated Random Walk Models to Animal Movement Data
Colored Terminal Output
Categorical Randomized Block Data Analysis
Censored Regression with Conditional Heteroscedasticity
Functions for calculating the CreditMetrics risk model
Credit Default Swaps in R
Credit Default Swap Functions
cremo: Comparative REndering of Model Outputs
Conditional Random Fields
Conditional Random Fields
Analyze Cricketers Based on ESPN Cricinfo Statsguru
CRImage a package to classify cells and calculate tumour cellularity
Group-Based Modelling of Longitudinal Data
Statistical Methods for Crime Series Linkage
Fits a Model that Partitions the Covariate Space into Blocks in a Data- Adaptive Way
Design of target-specific guide RNAs in CRISPR-Cas9, genome-editing systems
crisprseekplus
Tools for counting and visualising mutations in a target location
Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays
Continual Reassessment Method (CRM) for Phase I Clinical Trials
CCMN and other noRMalizatioN methods for metabolomics data
Object-Oriented Implementation of CRM Designs
Downloads and Builds datasets for Climate Reference Network
Graphics Cropping Tool
Graphics Cropping Tool
Modelling crop trial data
simulate crop growth
A Partial Clustering Algorithm with Automatic Estimation of the Number of Clusters and Identification of Outliers
Construction of Crossover Designs
The Cross-match Test
Cross Platform Meta-Analysis of Microarray Data
Analysis and Search of Crossover Designs
Confidence intervals for crossover points of two simple regression lines
Inter-Widget Interactivity for HTML Widgets
Verbal Autopsy Data Transform for Use with Various Coding Algorithms
Generic Functions for Cross Validation
Classes and methods for cross validation of "class prediction" with microarrays or proteomics
Classes and Methods for Cross Validation of "Class Prediction" with Microarrays or Proteomics
CreditRisk+ Portfolio Model
Cross-Recurrence Quantification Analysis for Categorical and Continuous Time-Series
Penalized Variable Selection in Competing Risks Regression
Competing risks regression for Stratified and Clustered data
Stepwise Covariate Selection for the Fine & Gray Competing Risks Regression Model
Categorical Regression Splines
Diagnostics for Fine and Gray Model
Nonlinear Regression Parameters Estimation by 'CRS4HC' and 'CRS4HCe'
Classification and Regression Tests
Doubly Robust Inverse Probability Weighted Augmented GEE Estimator
Sample Size Estimation Functions for Cluster Randomized Trials
HTTP Client
Classification Rules
Crunch.io Data Tools
Interface to Climatic Research Unit Time-Series Version 3.21 Data
Identifying cryptic relatedness in genetic association studies
Statistical Tests for Cryptographic Randomness
Calculate the Relative Crystallinity of Starch by XRD and FTIR
Functions for Conditional Simulation in Regression-Scale Models
Statistical tools for the analysis of ChIP-seq data
ChIP-Seq Analysis with Windows
Bayesian Nonparametric Modeling in R
Connectivity Scores with Factor Analysis
Covariate-adjusted Skewed Functional Model (cSFM)
The CShapes Dataset and Utilities
CShapes Dataset and Utilities
Conditionally Specified Logistic Regression
Closed Skew-Normal Distribution
Closed Skew-Normal Distribution
Accessing Csound functionality through R
Correlates of State Policy Data Set in R
Methods to Test Hypotheses on the Distribution of Spatial Point Processes
csSAM - cell-specific Significance Analysis of Microarrays
csSAM - cell-specific Significance Analysis of Microarrays
ChIP-Seq Statistical Power
Cognitive Social Structure Tools
Selection of Number of Clusters via Normalized Clustering Instability
Substantive significance testing for regression estimates and marginal effects.
Read and Write CSV Files with Selected Conventions
Fast Specialized CSV File Loader
Import and Export CSV Data with a YAML Metadata Header
Cluster and Tree Conversion.
ctglm
Latent Continuous Time Markov Chains
Continuous Threshold Expectile Regression
Correlated Trait Locus (CTL) Mapping in R
Conditional Transformation Models
A Text Mining Toolkit for Chinese Document
Estimating the Parameters of a Continuous-Time Markov Chain from Discrete-Time Data
Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains
Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains
Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains
Conditional Transformation Models
Continuous-Time Movement Modeling
Censored and Truncated Quantile Regression
Continuous Time Autoregressive Models
Continuous Time Structural Equation Modelling
Clustering of Time Series Gene Expression data
Classical Test Theory Functions
Classical Test Theory via Shiny
CRAN Task Views
CRAN Task Views
A Class of Mixture Models for Ordinal Data
Adaptive Multivariate Integration over Hypercubes
Codon Usage Bias Fits
Rule- and Instance-Based Regression Modeling
Rule- And Instance-Based Regression Modeling
MultiDimensional Feature Selection (MDFS)
CUDA Parallel Implementation of a Bayesian Multilevel Model for fMRI Data Analysis
Data sets for the examples used in the package "cudaBayesreg"
CUDIA Cross-level Imputation
Charles's Utility Function using Formula
Functions for statistical analysis and plotting of image properties
Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.
Analyze Multivariate Phenotypes by Combining Univariate Results
Extends ddply to allow calculation of cumulative quantities.
Change point detection in genomic sequences
Cumulative Descriptive Statistics
A Modern and Flexible Web Client for R
Tools to Transform 'cURL' Command-Line Calls to 'httr' Requests
Estimation of CCI and CLFS Functions
Partial Function Application with %<%, %-<%, and %><%
Dynamic Systems Estimation - Curvature Extensions
The package will formally test two curves represented by discrete data sets to be statistically equal or not when the errors of the two curves were assumed either equal or not using the tube formula to calculate the tail probabilities.
Filtering of Flow Cytometry Samples
Cusp-Catastrophe Model Fitting Using Maximum Likelihood
Cusp-Catastrophe Model Fitting Using Maximum Likelihood
Customized Training for Lasso and Elastic-Net Regularized Generalized Linear Models
Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search.
Compute Decision Interval and Average Run Length for CUSUM Charts
CUTOFF: A Spatio-temporal Imputation Method
An R package to perform LPUE standardization and stock assessment of the English Channel cuttlefish stock using a two-stage biomass model
Cross-Validated Area Under the ROC Curve Confidence Intervals
Estimation of the Calibration Equation with Error-in Observations
Color Vision Deficiencies
Color Vision Deficiencies
Cancer Variant Explorer
Tests for the Equality of Coefficients of Variation from Multiple Groups
Genome-wide association analysis based on predictive ability
Discrete Cramer von Mises Goodness-of-Fit Tests
Penalized Logistic Regression Model using Majorization Minimization by Coordinate Descent (MMCD) Algorithm
Calculate the predictive squared correlation coefficient
Cardiovascular Risk Calculator
Fast Cross-Validation via Sequential Testing
Level-Dependent Cross-Validation Thresholding
Cross-validation tools for regression models
Regularized Estimators of Covariance Matrices with CV Tuning
Convex Biclustering Algorithm
Splitting methods for convex clustering
Miscellaneous Functions for Math, Plotting, Printing, Statistics, Strings, and Tools
Cluster Weighted Models by EM algorithm
extend cxxfunction by saving the dynamic shared objects
Significance of periodic expression pattern in time-series data
Tools for Cycling Data Analysis
Cyclomatic Complexity of R Code
cycloids
Cyclic Coordinate Descent for Logistic, Poisson and Survival Analysis
Query 'Team Cymru' 'IP' Address, Autonomous System Number ('ASN'), Border Gateway Protocol ('BGP'), Bogon and 'Malware' Hash Data Services
Cycle and Phase Identification for mastication data
Agent-Based Model for Taenia_solium Transmission and Control
Cytobank API Wrapper for R
Cytometric diversity indices
cytofkit: an integrated mass cytometry data analysis pipeline
GatingML interface for openCyto
Predicting Causal Direction from Dependency Features
Interactive Heat Maps Using 'htmlwidgets' and 'D3.js'
Two Sample Test with Wasserstein Metric
Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R
Plotting D3 Hierarchical Plots in R and Shiny
'd3.js' Utilities for R
Data Analysis and Graphics Data and Functions
Data Sets and Functions, for Demonstrations with Expression Arrays and Gene Sequences
Data Sets and Functions, supplementary to DAAG
Three-Way Data Analysis Through Densities
Accurate, high-resolution sample inference from amplicon sequencing data
Functions Useful in the Design and ANOVA of Experiments
Design and Analysis of Experiments with R
Design and Analysis of Experiments with R
Diff, Patch and Merge for Data.frames
Data analysis for forensic scientists
Learning directed acyclic graphs (DAGs) through bootstrap aggregating
Consensus genetic maps
Graphical Analysis of Structural Causal Models
Graphical Analysis of Structural Causal Models
dagLogo
R functions for directed acyclic graphs
Diagnostic accuracy of classification models.
Functions and models related to dairy production
Dynamical Assembly of Islands by Speciation, Immigration and Extinction
Data Analysis and Knowledge Spaces
The DALY Calculator - Graphical User Interface for Probabilistic DALY Calculation in R
Data Analysis Metabolomics
Efficient design and analysis of factorial two-colour microarray data
Neural Network Numerai
Dave Armstrong's Miscellaneous Functions
Dave Armstrong's Miscellaneous Functions
Dynamic Assembly Model of Colonization, Local Extinction and Speciation
Dams in the United States from the National Inventory of Dams (NID)
Dandelion Plot for R-Mode Exploratory Factor Analysis
Proteomics data analysis tool
Tools for the Differential Analysis of Proteins Abundance with R
Package for Deep Architectures and Restricted Boltzmann Machines
The Analysis of Dark Adaptation Data
Tools to Work with the Dark Sky API
Denoising Algorithm based on Relevance network Topology
Statistical Tools to Analyze Your Darts Game
Interactive Data Visualization with D3.js
Distributed Annotation System in R
Tools for Data Manipulation
File-Based Access to Large Matrices Stored on HDD in Binary Format
Tools for Checking Data Consistency
Data Checking
Data Cleaning
Tools for Easily Combining and Cleaning Data Sets
Divide and Recombine for Large, Complex Data
Data Explorer
Write Data Frames to Xls Files
Estimating Finite State Machine Models from Data
Import Multiple File Types
A Suite of Checks for Identification of Potential Errors in a Data Frame as Part of the Data Cleaning Process
A system for mapping foreign objects to R variables and environments
Unified access to your data sources
Easily Source Publicly Available Data on Derivatives
R Interface to the DataONE REST API
A Flexible Container to Transport and Manipulate Data and Associated Resources
RStudio Addins for Data Copy-Pasta
Performs variable level data quality checks and generates summary statistics
Retrieval Functions for USGS and EPA Hydrologic and Water Quality Data
DataRobot Predictive Modeling API
Switzerland's Data Series in One Place
Handling survey data in R. (official release)
Interface for Loading Datasets
Tools to Complete Euclidean Distance Matrices
An Implementation of a SAS-Style Data Step
Extension of `data.frame`
Extension of data.frame
General Purpose Hierarchical Data Structure
Support functions for packages VBmix, semisupKernelPCA, and patchPlot.
Data and Workspace Browser for Terminals
Functions for Handling Dates
Functions for handling dates
Deconvolution Analysis Tool for Dynamic Contrast Enhanced MRI
Functions for "Data Analysis in Vegetation Ecology"
Retrieval from the DAVID bioinformatics data resource into R
The Davies Quantile Function
Discriminant Analysis with Additional Information
Discrete Bayesian Additive Regression Trees Sampler
Differential Binding of Transcription Factor with ChIP-seq
Provides a graphical user interface to connect with databases that use MySQL.
Goodness-of-fit and two sample comparison tests using sample entropy
Test for joint assessment of normality
Detecting Breakpoints and Estimating Segments in Trend
A Tool to Ensure the Validity of Database Writes
methods of distance-based gene set functional enrichment analysis.
'DBHYDRO' Hydrologic and Water Quality Data
R Database Interface
Testing 'DBI' Back Ends
Discrete Beta Kernel Graduation of Mortality Data
Compute the NPMLE of distribution from doubly censored data
Distance-Based Measures of Spatial Structures
Density Based Clustering of Applications with Noise (DBSCAN) and Related Algorithms
Distance-Based Statistics
Analyzing Dichotomous Choice Contingent Valuation Data
Analyzing Dichotomous Choice Contingent Valuation Data
A Package for Medical Image Analysis
A Package for Image Analysis of DCE-MRI (S4 Implementation)
A Package for Medical Image Analysis (S4 implementation)
Data Cloud Geometry (DCG): Using Random Walks to Find Community Structure in Social Network Analysis
Differential Co-expression Analysis and Differential Regulation Analysis of Gene Expression Microarray Data
Analysis of Ontologies and Protein Domain Annotations
Analysis of Ontologies and Protein Domain Annotations
Distance-correlation based Gene Set Analysis for longitudinal gene expression profiles
Methods for Reading dChip Files
Methods for reading dChip files
DChIPRep - Analysis of chromatin modification ChIP-Seq data with replication
Claims Reserving under the Double Chain Ladder Model
Data Cloning and MCMC Tools for Maximum Likelihood Methods
Data Cloning and MCMC Tools for Maximum Likelihood Methods
Functions for the Detection of Spatial Clusters of Diseases
Functions for the Detection of Spatial Clusters of Diseases
Model-Based Detection of Disease Clusters
Model-based detection of disease clusters
Data Converter Module
Hierarchical Models Made Easy with Data Cloning
Attribute profile estimation using Diagnostic Classification Models and MCMC
List Linear n-Peptide Constraints for Overlapping Protein Regions
Distance Covariance and Correlation for Time Series Analysis
Conventional Cross-validation statistics for climate-growth model
Depth-Based Classification and Calculation of Data Depth
The ddCt Algorithm for the Analysis of Quantitative Real-Time PCR (qRT-PCR)
Diversity-Dependent Diversification
Wrapper for the Duke Deploy REST API
Dynamic Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data.
Distinguish direct and indirect interactions with Graphical Modelling
Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays)
DDI with R
DDI with R
Analysis and Visualization of Droplet Digital PCR in R and on the Web
Distributed Data Structures in R
Learning Principal Graphs with DDRTree
Data Driven Smooth Tests
Statistical Deadband Algorithms Comparison
Assess how spatial roadkill patterns change with temporal sampling scheme
Learning Bayesian Networks with Mixed Variables
Deconvolution density estimation with adaptive methods for a variable prone to measurement error
Functions implementing MLE,its bias reduction for small samples and related issues
Bayesian Inference for Differential Equations
debrowser: Interactive Differential Expresion Analysis Browser
MVB's debugger for R
printf-style debugging
Debug R Packages
DEComposition of Indirect and Direct Effects
Tools for curating, analyzing, and manipulating biological sequences
Statistical Decision Analysis
Calculate and Plot Decision Curves
Quantitative Support of Decision Making under Uncertainty
Differential Co-Expression and Differential Expression Analysis
Decode Coded Variables to Plain Text and the Other Way Around
Various functions to quantify and decompose health inequalities
Global-Value-Chain Decomposition
Deconvolution Estimation in Measurement Error Models
Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data
Identifies Signatures Present in a Tumor Sample
Empirical Bayes Estimation Strategies
Deconvolution by Weighted Kernels
Fit and Deploy DECORATE Trees
Update of matrix decompositions
Differential Expression via Distance Summary for Microarray Data
A Data Analysis GUI for R
Tools for aggregating scale items
Factorial ANOVA for Deducer
Additional dialogs and functions for Deducer
Deducer Plug-in Example
Reliability and factor analysis plugin
Reliability and factor analysis plugin
PSY220 Deducer Plug-In
Converts data frames from wide to long and long to wide formats
Rich Output Display for Deducer
Deducer for spatial data analysis
Deducer for spatial data analysis
Add Survival Dialogue to Deducer
Deducer GUI for Text Data
Deducer GUI for Text Data
Deductive Correction, Deductive Imputation, and Deterministic Correction
Data Correction and Imputation Using Deductive Methods
DeepBlueR
Deep Boosting Ensemble Modeling
Exploiting Normal Contamination to Infer Copy Number from Deep Sequencing
An Implementation of Deep Neural Network for Regression and Classification
deep learning toolkit in R
Deep Learning Neural Network Models (RNN, CNN, etc) in NLP
Dirichlet-multinomial Evolutionary Event Profile Randomization (DEEPR) test
Detection of subclonal SNVs in deep sequencing data.
Compute the design effect for correlated binary data
Differential gene expression data formats converter
Integration of One-Dimensional Functions with Double Exponential Formulas
Detection of differentially expressed genes.
Two-sample tests on a graph
Models for Skewed Count Distributions Relevant to Networks
Report of DEG analysis
Identify Differentially Expressed Genes from RNA-seq data
Statistical Functions for the Delaporte Distribution
Delaunay Triangulation and Dirichlet (Voronoi) Tessellation
delftfews R extensions
Estimates Pseudotimes for Single Cell Expression Data
Estimation of Multivariate Densities Using Adaptive Partitions
deltaGseg
Identification of dichotomous differential item functioning (DIF) using Angoff's Delta Plot method
DeMAND
Functions to Calculate Relatedness on Diploid Genetic Data
Evaluating the genetic differentiation between populations based on Gst and D values.
Differential Expression from Multiple Indicators
Deming, Thiel-Sen and Passing-Bablock Regression
Deconvolution Models for Mixed Transcriptomes from Heterogeneous Tumor Samples
'DeMix' Sample Data
Forecasting Mortality, Fertility, Migration and Population Data
Kernel Density Estimation for Demonstration Purposes
demoniche - spatial population dynamics
DEvelopment (of Multi-Linear QSPR/QSAR) MOdels VAlidated using Test Set
Extending 'Dendrogram' Functionality in R
Faster Dendrogram Manipulation using 'Rcpp'
Extra functions to cut, label and colour dendrogram clusters
Analyzing Dendrometer Data
Decipher Barr & Stroud FP-15 from STX Files
Dendrogram seriation: ordering for visualisation
Modular Leaf Ordering Methods for Dendrogram Nodes
Parameter estimates (and real-time prediction) of a single dengue outbreak
Parameter Estimates and Real-Time Prediction of a Single Dengue Outbreak
Parameter Estimates and Real-Time Prediction of a Single Dengue Outbreak
Regularized Low Rank Matrix Estimation
Statistical Analyses of De Novo Genetic Variants
Visualization of Multivariate Functions, Sets, and Data
Clustering by Fast Search and Find of Density Peaks
Density.T.HoldOut: Non-combinatorial T-estimation Hold-Out for density estimation
Dens-Based Method for Partial Correlation Estimation in Large Scale Brain Networks
Density Ratio Estimation
Density strips and other methods for compactly illustrating distributions
Global Optimization by Differential Evolution
Differential Evolution Optimization in Pure R
Differential Evolution Optimization in Pure R
Statistical Inference for Parametric and Semiparametric Models Based on Dependently Truncated Data
Deconvolute Mixed Genomes with Unknown Proportions
Dependent Mixture Models
Dependent Mixture Models
Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4
Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4
Nonparametric Depth Functions for Multivariate Analysis
Multivariate Analogy of Quantiles
depthproc
Statistical Depth Functions for Multivariate Analysis
Statistical Depth Functions for Multivariate Analysis
Depth Tools Package
Stacks, Queues, and 'Deques' for R
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach
derfinder helper package
Plotting functions for derfinder
Symbolic Differentiation
Functions and R Code to Accompany Derivatives Markets
Manipulate DESCRIPTION Files
Seasonal Adjustment by Frequency Analysis
Descriptive Statistics
An Interface to the DescribeDisplay GGobi Plugin
Describe Data in R Using Common Descriptive Statistics
Descriptive Statistics & Distributions Exploration
Tools for Descriptive Statistics
Optimal deseasonalization for geophysical time series using AR fitting
Differential gene expression analysis based on the negative binomial distribution
Differential gene expression analysis based on the negative binomial distribution
Computational tool for designing genetical genomics experiments.
Finding Optimal Block Designs for a Generalised Linear Mixed Model
Construction of Optimally Matched Samples for Randomized Experiments and Observational Studies that are Balanced and Representative by Design
Desirability Functions for Ranking, Selecting, and Integrating Data
Desirabiliy Function Optimization and Ranking
Function Optimization and Ranking via Desirability Functions
Desirability functions in R
Desirability functions
Bagging with Distance-based Regression for Differential Gene Expression Analyses
Solvers for Initial Value Problems of Differential Equations (ODE, DAE, DDE)
Solvers for Initial Value Problems of Differential Equations ('ODE', 'DAE', 'DDE')
Estimation of Diagonal Elements of Sparse Precision-Matrices
Plotting Field Plans for Agricultural Experiments
Creates diffusion maps
DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments
Analyzing Wildlife Data with Detection Error
Analyzing Wildlife Data with Detection Error
Detect Data Containing Personally Identifiable Information
Test Set for Differential Equations
Test Set for Differential Equations
Implementation of the DetMCD Algorithm (Robust and Deterministic Estimation of Location and Scatter)
Suite of Deterministic and Robust Algorithms for Linear Regression
Start the detrendeR Graphical User Interface (GUI)
A computer program to detect markers responding to selection
A computer program to detect markers responding to selection
Compare Detrital Zircon Suites
EMF Graphics Output Device
Data sets from Devore's "Prob and Stat for Eng (7th ed)"
Quantify Relationship Between Developmental Rate and Temperature in Ectotherms
Tools to Make Developing R Packages Easier
Inference of differential exon usage in RNA-Seq
Data Management and Basic Analysis of Tests
DEXUS - Identifying Differential Expression in RNA-Seq Studies with Unknown Conditions or without Replicates
Convert a dataframe to JSON
Phase I/II Adaptive Dose-Finding Design for Combination Studies
Dose-finding by the continual reassessment method
Access Data Tables in a SQLite Data Base as Pseudo-Dataframes
Access Data Tables in an RODBC Data Base as Pseudo-Dataframes
Explore data.frames by plotting NA and classes of each variable
Differential Functioning of Items and Tests
Phase I/II Adaptive Dose-Finding Design for MTA
Derivative-free Optimization
Derivative-Free Optimization
Gene Selection
Phase I Control Charts (with Emphasis on Distribution-Free Methods)
A Bayesian Dose-Finding Design using Pharmacokinetics(PK) for Phase I Clinical Trials
Capture-Recapture Estimation using Bayesian Model Averaging
Genetic Algorithm with Incomplete Dominance for Feature Selection
Differential Gene Correlation Analysis
Discrete Global Grids for R
Differential Geometric LARS (dgLARS) method
Double Generalized Linear Models
Simulating Data for PLS Mode B Structural Models
Data for the 'dgo' Package
Discrete Goodness-of-Fit Tests
Discrete Goodness-of-Fit Tests
Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression Models
Differential Hub Gene Analysis
Double Hierarchical Generalized Linear Models
Independence Testing via Hilbert Schmidt Independence Criterion
Diagnostic Plot and Multivariate Summary Statistics of Weighted Samples from Importance Sampling
Diagnostic test accuracy evaluation for health professionals
Block Diagonal Extraction or Replacement
Functions for visualising simple graphs (networks), plotting flow diagrams
Functions for Visualising Simple Graphs (Networks), Plotting Flow Diagrams
Create Graph Diagrams and Flowcharts Using R
Export DiagrammeR Graphviz Graphs as SVG
Diagnostic test summary measures for three ordinal groups
Diallel Analysis with R
Beads Summary Plot of Ranges
Calculate probabilities of various dice-rolling events
Designs of Computer Experiments
Construction and Evaluation of Metamodels
Kriging Methods for Computer Experiments
Kriging-Based Optimization for Computer Experiments
Plot methods for computer experiments design and surrogate.
Color Schemes for Dichromats
Color Schemes for Dichromats
Dictionaries for reading microdata surveys from IBGE
Import medical imaging data using the DICOM Standard
A Simple Implementation and Demonstration of Gradient Boosting
Defines some physical constants and dielectric functions commonly used in optics, plasmonics.
R companion to "Curve and Surface Fitting with Splines"
R Interface to the ZEIT ONLINE Content API
Detection of Differential Item Functioning (DIF) in Rasch Models by Boosting Techniques
Difference of Two Precision Matrices Estimation
Differential Binding Analysis of ChIP-Seq peak data
Analyzing and Visualizing Differential Correlation Networks in Biological Data
Calculates Confidence Intervals for two Dependent Proportions
Functions from the book Solving Differential Equations in R
Functions from the book Solving Differential Equations in R
Metrics of Difference for Comparing Pairs of Maps
Performs differential gene expression Analysis
Differential Analyis of Hi-C Data
Diffusion IRT Models for Response and Response Time Data
DiffLogo: A comparative visualisation of sequence motifs
Identifying differential DNA loops from chromatin topology data
Diffs for R Objects
Display Differences Between Two Files using Codediff Library
Baseline identification and peak decomposition for x-ray diffractograms
Projects for Text Version Comparison and Analytics in R
Visualization for 'diffrprojects'
Diffusion map
Inference and Analysis for Generalized Quadratic Diffusions
Inference and Analysis for Diffusion Processes via Data Imputation and Method of Lines
Inference and Analysis for Jump Generalized Quadratic Diffusions
Network Diffusion Algorithms
A Penalty Approach to Differential Item Functioning in Rasch Models
Detection of Dichotomous Differential Item Functioning (DIF) and Differential Distractor Functioning (DDF) by Non-Linear Regression Models
Collection of Methods to Detect Dichotomous Differential Item Functioning (DIF)
Item Focused Trees for the Identification of Items in Differential Item Functioning
Create Compact Hash Digests of R Objects
Create cryptographic hash digests of R objects
Inference of Genetic Variants Driving Cellular Phenotypes
An application programming interface for generating null models of social contacts based on individuals' space use
Estimate Copy Number for Digital PCR
Use Data from Published Plots in R
digitize : a plot digitizer in R
Data-Informed Link Strength. Combine multiple-relationship networks into a single weighted network. Impute (fill-in) missing network links.
DIME (Differential Identification using Mixture Ensemble)
A Framework for Dimensionality Reduction
Bayesian Estimation of DINA Model
DiNAMIC A Method To Analyze Recurrent DNA Copy Number Aberrations in Tumors
Hartigan's Dip Test Statistic for Unimodality - Corrected
Bayesian Clustering of Multivariate Data Under the Dirichlet-Process Prior
Directional Statistics
Direct Labels for Multicolor Plots
Direct labels for multicolor plots in lattice or ggplot2
A dynamic visualization tool of multi-level data
Direction Analysis for Pathways and Kinases
Adjusted Means and Proportions by Direct Standardisation
Dirichlet and Generalized Dirichlet Distribution functions
Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
Dirichlet Regression in R
Estimation in Dirichlet-Multinomial distribution.
soil science related functions
Discrete associated kernel estimators
Discourse 'API' Client
Discrete Laplace Exponential Family
Discrete Laplace Mixture Inference using the EM Algorithm
DiscML: An R package for estimating evolutionary rates of discrete characters using maximum likelihood
Coordinate-Descent Algorithm for Discrete Data
Discrete Inverse Weibull Distribution
Discrete Laplace Distributions
Multiple testing procedures for discrete test statistics
Create and Manipulate Discrete Random Variables
Discrete Weibull Distributions (Type 1 and 3)
Data preprocessing, discretization for classification.
Discrimination of Alternative Reproductive Tactics (ARTs).
Tools of the Trade for Discriminant Analysis
Discrete Time Survival Analysis
Modelling Spatial Variation in Disease Risk for Areal Data
Modelling Spatial Variation in Disease Risk for Areal Data
Functions to compliment diseasemapping
Calculate Dissimilarity Matrix for Dataset with Mixed Attributes
A Pipeline to Analyze Resistance and Tolerance from Drug Disk Diffusion Assays
Species Distribution Modeling
Species Distribution Modeling
2D Hausdorff and Simplex Dispersion Orderings
Disparity Filter Algorithm for Weighted Networks
displayHTS
Dispersion models
Create Disposable R Packages for Testing
Utilities for making pairwise comparisons of multivariate data
Distance Sampling Detection Function and Abundance Estimation
Calculates Study Size Required for Distance Sampling
DiSTATIS Three Way Metric Multidimensional Scaling
Computations over Distributed Data without Aggregation
Download Occurrence Data of Vascular Plants in Germany from the FLORKART Database
Distribution-free confidence region (distfree.cr)
Method Functions for Confidence Intervals and to Distill Information from an Object
Distance Between Phylogenetic Histories
Object Oriented Implementation of Distributions
Object Oriented Implementation of Distributions
Documentation for 'distr' Family of R Packages
Documentation for 'distr' Family of R Packages
S4 Classes for Elliptically Contoured Distributions
S4 Classes for Elliptically Contoured Distributions
Extensions of Package 'distr'
Extensions of Package 'distr'
Four Essential Functions for Statistical Distributions Analysis: A New Functional Approach
Distribution Utilities
Distribution Utilities
Object Oriented Implementation of Probability Models
Object Oriented Implementation of Probability Models
Distributed Multinomial Regression
Distribution Classes for Distributions from Rmetrics
Distribution Classes for Distributions from Rmetrics
Simulation Classes Based on Package 'distr'
Simulation Classes Based on Package 'distr'
Extensions of Package 'distr' for Teaching Stochastics/Statistics in Secondary School
Extensions of Package 'distr' for Teaching Stochastics/Statistics in Secondary School
Estimation and Testing Classes Based on Package 'distr'
Estimation and Testing Classes Based on Package 'distr'
Trees and Forests for Distributional Regression
Provides tools for quality checks of georeferenced plant species accessions.
Diversity Estimator
Dive Analysis and Calibration
Dive analysis and calibration
Diversity Measures for Complex Systems
Comparative 'Phylogenetic' Analyses of Diversification
A Comprehensive, General Purpose Population Genetics Analysis Package
Building Diversity Models from Multiple Species Occupancy Models
Functions for re-sampling a community matrix to compute diversity indices at different sampling levels.
Get Images Out of DICOM Format Quickly
HRM Diversity Assay Analysis Tool
Tools for Analysis of Diversity and Similarity in Biological Systems
Nearest Neighbour Contingency Table Analysis
Distance Measure Based Judgment and Learning
Diffusion Kernels on a Set of Genotypes
The double Kolmogorov-Smirnov package for evaluating multiple testing procedures.
Implementation of Differentiable Lasso Penalty in Linear Models
Allow Access to the 'Dlib' C++ Library
Bayesian and Likelihood Analysis of Dynamic Linear Models
Bayesian and Likelihood Analysis of Dynamic Linear Models
Detection Localization Mapping for QTL
Generalized Dynamic Linear Modeler
Data-Limited Methods Toolkit
Distributed Lag Non-Linear Models
Dynamic Linear Regression Model
Distributed-Lag Structural Equation Modelling
Download Stats of R Packages
Dynamic Model Averaging
Distance Metric Learning in R
Dyadic Mixed Model for Pedigree Data
Dynamic Modeling and Parameter Estimation in ODE Models
Delete or Merge Regressors for linear model selection.
Differentially Methylated Regions caller
Methylation array and sequencing spatial analysis methods
DMRforPairs: identifying Differentially Methylated Regions between unique samples using array based methylation profiles
DMR Detection by Non-Homogeneous Hidden Markov Model from Methylation Array Data
Dependency Modeling Toolkit
Dependency Modeling Toolkit
Mutate Data Frames with Random Variates
Functions and data for "Data Mining with R"
Functions and Data for the Second Edition of "Data Mining with R"
Differential Network Analysis
A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments
DNA copy number data analysis
A procedure for large scale contamination search
DNA Profiling Evidence Analysis
Generating and Testing DNA Sequences
DNase I footprinting analysis of DNase-seq data
High-throughput prediction of DNA shape features
Tools for Analysing Forensic Genetic DNA Data
Dynamic Network Clustering
Distribution and Equation
Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology
Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology
Differential Network Local Consistency Analysis
Discriminant Non-Negative Matrix Factorization
Analysis of Discretely Observed Linear Birth-and-Death(-and-Immigration) Markov Chains
Groupwise Statistics, LSmeans, Linear Contrasts, Utilities
Command-Line Interface Specification Language
Optimal Designs for Copula Models
Automatic Documentation for R packages
Automatic Documentation for R packages
Tools for R Markdown to Docx Documents
Extract Data Tables and Comments from Microsoft Word Documents
Functions for Acceptance Sampling Ideas originated by H.F. Dodge
Detection of Differential Rhythmicity
Full Factorials, Orthogonal Arrays and Base Utilities for DoE Packages
Wrapper package for design of experiments functionality
Foreach Parallel Adaptor using the Future API of the 'future' Package
Geneset enrichment based on InterPro domain signatures
Foreach Parallel Adaptor for 'parallel'
Foreach Parallel Adaptor for 'parallel'
ADI (Average Dominance Index), Social Network Graphs with Dual Directions, and Music Notation Graph
R Console Bindings for the 'Domino Command-Line Client'
Foreach parallel adaptor for the Rmpi package
Foreach Parallel Adaptor for the 'parallel' Package
Foreach Parallel Adaptor for the 'parallel' Package
Identify likely duplicate samples from genomic or meta-data
Genotyping and QTL Mapping in DO Mice
Foreach parallel adapter for the rredis package
Generic Reproducible Parallel Backend for foreach Loops
Generic Reproducible Parallel Backend for foreach Loops
Disease Ontology Semantic and Enrichment analysis
Planning and Analyzing Dose Finding Experiments
Foreach parallel adaptor for the revoIPC package
Foreach Parallel Adaptor for the 'snow' Package
Foreach Parallel Adaptor for the 'snow' Package
Performing Multivariate Dose-Response Meta-Analysis
Compute Statistics Helper Functions
Render and Export DOT Graphs in R
Distribution of Typicality Coefficients
Enhanced Foreign Function Interface Supporting Long Vectors
Load Environment Variables from '.env'
Dot-and-Whisker Plots of Regression Results
Test against parametric regression function
Differential Exon Usage Test for RNA-Seq Data via Empirical Bayes Shrinkage of the Dispersion Parameter
Local Linear Hazard Estimation with Do-Validated and Cross-Validated Bandwidths
Functions Ported from 'MMR2' Toolbox Offered in Kevin Dowd's Book Measuring Market Risk
Functions Ported from 'MMR2' Toolbox Offered in Kevin Dowd's Book Measuring Market Risk
Download Files over HTTP and HTTPS
Downscaling Species Occupancy
Downscaling Species Occupancy
A Tool to Downsize Large Workflows for Testing
Dynamic Path Approach
Dirichlet Process Beta-Binomial Mixture
Digital PCR Analysis
Differential Protein Expression Analysis using Quantitative Mass Spectrometry Data (dpeaqms)
Primal Graphical Lasso
Dendrochronology Program Library in R
Dendrochronology Program Library in R
Concordance for Dendroclimatology
A Grammar of Data Manipulation
Dirichlet Process Mixture model simulation for clustering and image segmentation
Dirichlet Process Mixture model simulation for clustering and image segmentation
Data Package Manager for R
Bayesian nonparametric modeling in R
The `dpqrcox' package provides d/p/q/r functions of Coxian distributions.
Data Pre-Processing and Visualization Functions for Classification
Methods for Dimension Reduction for Regression
Methods for Dimension Reduction for Regression
Drat R Archive Template
Visualising R syntax through graphics
Visualising R syntax through graphics
Discriminative Random Walk with Restart
Data Representation: Bayesian Approach That's Sparse
Analysis of Dose-Response Curves
DiffeRential Evolution Adaptive Metropolis
Regularized Estimation of Dynamic Linear Regression in the Presence of Autocorrelated Residuals (DREGAR)
Dose-Response Data Evaluation
Doubly Robust Generalized Estimating Equations
R Driver for Apache Drill
Differential splicing and sQTL analyses with Dirichlet-multinomial model in RNA-Seq
Discontinuous Regression and Image Processing
Drivernet: uncovering somatic driver mutations modulating transcriptional networks in cancer
Multiplex Immunoassays Data Analysis
Regression and association models for repeated categorical data
Dual Empirical Likelihood Inference under Density Ratio Models in the Presence of Multiple Samples
Analyze Drop Out of an Experiment or Survey
Tools for Drought Modeling and Assessment
Dimensionality Reduction via Regression
Dose-Response Modeling with Smoothing Splines
Implementation of a Machine Learning Framework for Predicting Drugs Side Effects
Comparison of disease and drug profiles using Gene set Enrichment Analysis
Descriptive Statistics
Discretization-Based Direct Random Sample Generation
Discretization-Based Direct Random Sample Generation
Bayesian subgroup analysis in clinical trials
Dynamic Systems Estimation (Time Series Package)
Dynamic Systems Estimation (Time Series Package)
DSE (unbundled transition package).
DSE (unbundled transition package).
Integration of Disease Similarity Methods
Functions and datasets for the book "Data Science in R"
Distributed Storage and List
Distributed Storage and List
Data Science Labs
Dynamic Slicing
Density Surface Modelling of Distance Sampling Data
A Language to Facilitate the Creation and Visualization of Two- Dimensional Dynamical Systems
Spatial Modelling for Distance Sampling Data
Dispersion shrinakge for sequencing data.
Distance Sampling Simulations
Using Dempster-Shafer Theory
Analyze Two Choice Reaction Time Data with the D*M Method
Recursive Partitioning for Discrete-Time Survival Trees
Direct Surrogate Variable Analysis
Exploring Disease Similarity in Terms of Dysfunctional Regulatory Mechanisms
A Wrapper of the JavaScript Library 'DataTables'
Dynamic Transcriptome Analysis
Simplifying Descriptive Frequencies and Statistics
Comparison of Binary Diagnostic Tests in a Paired Study Design
Doubly truncated data analysis
Analysis of Diffusion Weighted Imaging (DWI) Data
Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted for Unequal Variances and Unequal Sample Sizes
Suite of functions related to discrete-time discrete-state Markov Chains
Data Table Back-End for 'dplyr'
Estimation and Comparison of Dynamic Treatment Regimes
Learning Algorithms for Dynamic Treatment Regimes
DTR Estimation and Inference via G-Estimation, Dynamic WOLS, and Q-Learning
Discrete Trigonometric Transforms
Dynamic time warping algorithms
Dynamic Time Warping Algorithms
Time Series Clustering Along with Optimizations for the Dynamic Time Warping Distance
Time-Weighted Dynamic Time Warping for Satellite Image Time Series Analysis
Dual KS Discriminant Analysis and Classification
Dual Scaling Analysis of Multiple Choice Data
Create dummy/indicator variables flexibly and efficiently
Automatic Creation of Dummies with Support for Predictive Modeling
A dummy package to ask R-Forge to install packages that I need
Software implementation of step-down and step-up Dunnett test procedures
Dunn's Test of Multiple Comparisons Using Rank Sums
a package for checking high-throughput genomic data redundancy in meta-analysis
Bayesian inference from count data using discrete uniform priors
Assessment of duplication rates in RNA-Seq datasets
Discrete variations of a fractional Brownian motion
Analyze Dose-Volume Histograms and Check Constraints
Access to Dataverse 3 APIs
DWD implementation based on A IPM SOCP solver
Parametric Regression for Discrete Response
The GASSCO method for correcting for slide-dependent gene-specific dye bias
Interface to 'Dygraphs' Interactive Time Series Charting Library
Did You Mean?
Time Series Regression
Dynamically visualized probability distributions and their moments
dynamicGraph
Dynamic Hazard Models using State Space Models
Methods for Detection of Clusters in Hierarchical Clustering Dendrograms
Implementation of the Dynamic TOPMODEL Hydrological Model
Dynamic Trees for Learning and Design
Full Interactive GUI for Dynamic Biplot in R
Denoising and clustering for dynamical image sequence (2D or 3D)+T
Dynamic Correlation Package
Dynamic document tools
Resisting Neighbor Label Attack in a Dynamic Network
Fit Dynamic Intervention Model
Dynamic Linear Regression
Dynamic Nomograms for Linear, Generalized Linear and Proportional Hazard Models
Fast Fourier Transform to Identify Associations Between Time Course Omics Data
Dynamic Panel Data Models
Companion Package to "Dynamic Prediction in Clinical Survival Analysis"
Dynamic Modeling in R
Dynamic Range Boxes
Dynamic Simulations of Autoregressive Relationships
Dynamic Models for Survival Data
Methods for Estimating Dynamic Treatment Regimes
Methods for Estimating Dynamic Treatment Regimes
Functions for Dyadic Sequence Analyses
Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien
Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien
Plots of the Empirical Attainment Function
Dynamic Web-Based Analytics for the Energy Industry
Early Warning Signals Toolbox for Detecting Critical Transitions in Timeseries
Early Warning Signals Toolbox for Detecting Critical Transitions in Timeseries
Multivariate Adaptive Regression Splines
Wrapper to the Emd-L1 library by Haibin Ling and Kazunori Okada
Derive a Color Palette from a Particular Location on Earth
Efficient Approximate Bayesian Computation Sampling Schemes
Efficient Approximate Bayesian Computation Sampling Schemes
Analysis of variance and other important complementary analyzes
Generic S3 Classes for Simple Database Interfaces
An Easy Way to Descriptive Analysis
Tools for Building R Formats
EasyHTMLReport
Utility functions for working with mark-recapture data.
Easy nonlinear model
Easy Loading and Installing of Packages
Sample Size Estimation for Experimental Designs
Search and Retrieve Scientific Publication Records from Pubmed
EasyqpcR for low-throughput real-time quantitative PCR data analysis
Easy Regression
Count summarization and normalization for RNA-Seq data
Simple Database Interface for SQLite, MySQL and MS Access
Simple database interface for RODBC Excel.
Simple Database Interface for MySQL
Easy Interface to the Statistical Disclosure Control Package 'sdcTable'
Evaluation of stratified genome-wide association meta-analysis results
Ensemble Forecast Verification for Large Data Sets
eat
eatData
eatDesign
eatDev
eatGet
eatModel
Prepare Data for IRT Analyses
eatRep
eatRest
eatTools
Estimate National Trends in International Large-Scale Assessments
Elimination-by-Aspects Models
Entropy reweighting to create balanced samples
Unified Approach for Simultaneous Gene Clustering and Differential Expression Identification
Sample Size Calculation Method for Cost-Effectiveness Studies Based on Expected Value of Perfect Information
Empirical Bayes Thresholding and Related Methods
EBcoexpress for Differential Co-Expression Analysis
Empirical Bayes Estimation of Dynamic Bayesian Networks
Empirical Bayesian Elastic Net
Genotyping and SNP Detection using Next Generation Sequencing Data
Empirical Bayesian Lasso and Elastic Net Methods for Generalized Linear Models
DUMMY DUMMY DUMMY
Image processing and analysis toolbox for R
EBI Metagenomics Portal
EBI Metagenomics Portal
Ensemble BMA Forecasting
Empirical Bayes Ranking
Exact Bayesian Segmentation
Exact Bayesian Segmentation
Exon Based Strategy for Expression Analysis of genes
An R package for gene and isoform differential expression analysis of RNA-seq data
Bayesian analysis for identifying gene or isoform expression changes in ordered RNA-seq experiments
Genotyping and SNP calling using single-sample next generation sequencing data
Programmatic Access to the European Central Bank's Statistical Data Warehouse (SDW)
Simulation from Endpoint-Conditioned Continuous Time Markov Chains
Elliptic Distribution and Lambda Option Pricing Model
Data Sets for Econometrics
Data Sets for Econometrics
Empirical CDF for Heavy Tailed Data
Functions for Spatial Point Pattern Analysis
Functions for Ecdat
Functions for Ecdat
Embedding Interactive Charts Generated with ECharts Library into Shiny Applications
Echogram Visualisation and Analysis
Efficient calculation of fine structure isotope patterns via Fourier transforms of simplex-based elemental models
Environment Based Clustering for Interpretable Predictive Models in High Dimensional Data
Build Error Correction Models
Ecological Inference in 2x2 Tables
Dissimilarity-based functions for ecological analysis
Programmatic Interface to the API Serving UC Berkeley's Natural History Data
Spatial Analysis of Phenotypic, Genotypic and Environmental Data
A community modeling foundation for Eco-Hydrology.
Meta-data and tools for E. coli
"A practical guide to ecological modelling - using R as a simulation platform"
"A Practical Guide to Ecological Modelling - Using R as a Simulation Platform"
Ecological Modelling Toolbox
General Analysis of Various Economics Demand Systems
Ecologically-informed phylodiversity metrics
Ecological Regression using Aggregate and Individual Data
R Interface to the EcoData Retriever
An R Interface to Brazilian Central Bank and Sidra APIs and the IPEA Data
Toolbox for Aquatic Ecosystem Modeling
Null Model Analysis for Ecological Data
Embedded Conic Solver in R
Simulating Community Assembly and Ecological Diversification Using Ecospace Frameworks
Spatial Ecology Miscellaneous Methods
Methods for Ecotoxicology
Methods for Ecotoxicology
EcoTroph R package
Procedures for Ecological Assessment of Surface Waters
Simulation of Ecological Models
Non-Parametric Multiple Change-Point Analysis of Multivariate Data
A set of R resources to teach landscape ecology, landscape analysis and spatial statistics
Evolutionary Computing in R
Exploratory Data Analysis using Random Forests
Exploratory Data Analysis and Normalization for RNA-Seq
Economic Design of Control Charts
Edge Detection and Clustering in Images
expression density diagnostics
Experimental Design in Differential Abundance analysis
Exploratory and Descriptive Event-Based Data Analysis
Email Data Extraction Using R
Maximum Entropy Sampling
Read Data from European Data Format (EDF and EDF+) Files
Estimating Discrimination Factors
Reading EDF(+) and BDF(+) Files
Creating Empirical Distribution Functions
Platform for EDGAR Filing Management
Extraction of Differential Gene Expression
Circle Plot with Bundled Edges
Spatial Edge Correction
Empirical Analysis of Digital Gene Expression Data in R
More Powerful Unconditional Testing of Negative Binomial Means for Digital Gene Expression Data
Network Reconstruction and Changepoint Detection
Simultaneous Edit-Imputation for Continuous Microdata
Parsing, Applying, and Manipulating Data Cleaning Rules
Dynamic Model Averaging with Grid Search
Performs Extended Digital PCR Analysis
Estimation of the Effective Dimension Reduction ('EDR') Space
Provides tools for dimension reduction methods
Stan Models for Item Response Theory
Compute and Decompose Inequality in Education
Exploring Election and Census Highly Informative Data Nationally for Australia
Analysing Education Trials
Analytical Package for Analysing Education Trials
Analytical Package for Analysing Education Trials
Tools for analysis and classification of electroencephalography (EEG) data.
Engineering Evaluation by Gene Categorization (eegc)
Toolkit for Electroencephalography Data
Data for package eegkit
Extended Empirical Likelihood
Read and Preprocess Fluorescence Excitation-Emission Matrix (EEM) Data
Tools for Pre-Processing Emission-Excitation-Matrix (EEM) Fluorescence Data
Convenience Functions for Education Data
Utility Functions for Exploratory Factor Analysis
Wavelet-Based Enhanced FDR for Signal Detection in Noisy Images
Bayesian Effect Fusion for Categorical Predictors
Average and Conditional Effects
Effect Displays for Linear, Generalized Linear, and Other Models
Effect Displays for Linear, Generalized Linear, and Other Models
Test changes of a grouped response relative to baseline.
Visualization of Categorical Response Models
Effect Stars
Prediction of Therapeutic Success
Efficient Initials for Computing the Maximal Eigenpair
The Causal Effects for a Causal Loglinear Model
The causal effects for a causal loglinear model
Efficient Effect Size Computation
Read European Fluxes CSV Files
Tool for Ensemble Feature Selection
Error Grid Analysis
Extending guilt by association by degree
Engle-Granger Cointegration Models
Hierarchical Modelling of Faecal Egg Counts
Tool for ego-centric measures in Social Network Analysis
Exploration and Graphics for RivEr Trends (EGRET)
Exploration and Graphics for RivEr Trends (EGRET) Confidence Intervals
Ensemble of Gene Set Enrichment Analyses
Event History Analysis
Extended HOF (Huisman-Olff-Fresco) Models
Ecological Inference
R Wrapper for the Energy Information Administration (EIA) API
Compares EI, Goodman, RxC Estimates
Generates (dense) matrices that have a given set of eigenvalues
Semiparametric factor and regression models for symmetric relational data
Computes confidence intervals for principal components
Efficient Inference of Local Ancestry
eiPack: Ecological Inference and Higher-Dimension Data Management
Accelerated similarity searching of small molecules
Expression data analysis via the Iterative Signature Algorithm
An algorithm for reducing errors-in-variable bias in simple linear regression
Ecological Inference with individual and aggregate data
Ecological Inference with individual and aggregate data
Two-sample Empirical Likelihood
Enhanced Least Absolute Shrinkage and Selection Operator Regression Model
General Purpose Interface to 'Elasticsearch'
Ising Network Estimation using Elastic Net and k-Fold Cross-Validation
Elastic-Net for Sparse Estimation and Sparse PCA
A Lightweight Interface for Interacting with Elasticsearch from R
ELBOW - Evaluating foLd change By the lOgit Way
Collection of functions for statistical election audits
Functions for election audits using stratified random samples
R Functions to Download and Clean Brazilian Electoral Data
Electricity market models
Electronics
A Shiny Application for Reducing Elemental LA-ICPMS Data from Solid Structures
Data Sets, Functions and Examples from the Book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman
Access Elevation Data from Various APIs
Load Associated Press Election Results with Elex
Sampling from a Empirical Likelihood Bayesian Posterior of Parameters Using Hamiltonian Monte Carlo
Ellipse Summary Plot of Quantiles
Functions for drawing ellipses and ellipse-like confidence regions
Elliptic Functions
Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes
Implementation of ELM (Extreme Learning Machine ) algorithm for SLFN ( Single Hidden Layer Feedforward Neural Networks )
Extreme Machine Learning (ELM)
Preference Rating for Visual Stimuli Based on Elo Ratings
Animal Dominance Hierarchies by Elo Rating
Exact Logistic Regression via MCMC
Entropy-based Local indicator of Spatial Association
Elston-Stewart Algorithm
Experience Life Tables
Empirical Likelihood Analysis for the Cox Model and Yang-Prentice (2005) Model
Easy Microarray Data Analysis
Expectation-Maximization Binary Clustering
Tools to Analyze the Thermal Reaction Norm of Embryo Growth
Evolutionary Monte Carlo (EMC) algorithm
EM Algorithm for Model-Based Clustering of Finite Mixture Gaussian Distribution
Empirical Mode Decomposition and Hilbert Spectral Analysis
Support Functions and Data for "Ecological Models and Data"
Estimating and Mapping Disaggregated Indicators
Earth Mover's Distance
Earth Mover's Distance for Differential Analysis of Genomics Data
Exponentially Modified Gaussian (EMG) Distribution
Evaluation of Modeling without Information Leakage
EM Algorithms for Estimating Item Response Theory Models
What the package does (short line)
Estimation of Wastewater Emissions in Combined Sewer Systems
Read and Write Ecological Metadata Language Files
Fit (logistic) LASSO when there is missing data in the predictors
Fitting log-Linear Models in Sparse Contingency Tables
Evolutionary model-based multiresponse approach
End-Member Modelling of Grain-Size Data
Read and Write to an EMME/2 databank
Contrasts in mixed effects for EMMIX model with random effects.
Fitting Mixtures of CFUST Distributions
The EM Algorithm and Skew Mixture Distribution
Fitting Unrestricted Multivariate Skew t Mixture Models
A Maximum Likelihood Approach to the Analysis of Modularity
Fitting Mixed Models with Known Covariance Structures
Evolutionary Multiobjective Optimization Algorithms
Emoji and Font Awesome in Graphics
Tools for Environmental and Ecological Survey Design
Tools for Environmental and Ecological Survey Design
Eye Movement Analysis Package for Fixation and Saccade Detection
Expected Maximum Profit Classification Performance Measure
Uses Brown's method to combine p-values from dependent tests
Routines for Performing Empirical Calibration of Observational Study Estimates
Simulation-Based False Discovery Rate in RNA-Seq
Empirical Likelihood Ratio for Censored/Truncated Data
Empirical Likelihood Ratio Test for Two Samples with Censored Data
Epimed Solutions collection for data editing, analysis, and bechmarking of health units
The Analysis of Variance with EMS
Extended Multiplicative Signal Correction
Exact Multinomial Test: Goodness-of-Fit Test for Discrete Multivariate data
Bayesian emulation of computer programs
Main Package of the EMU Speech Database Management System
Entropy Minimization over Variable Clusters (EMVC)
Tools for Ecological Network Analysis
Represent Ordered Lists and Pairs as Strings
A compilation of ENCODE metadata
Classical Simultaneous Equation Models
R Package for Fitting Multinomial Probit Models with Endogenous Selection
R Package for Analyzing Endorsement Experiments
Transmissions and Receptions in an End to End Network
E-Statistics: Multivariate Inference via the Energy of Data
Data Published by the United States Federal Energy Regulatory Commission
Translate Integers into English
Data sets from "Introductory Statistics for Engineering Experimentation"
Data sets from "Introductory Statistics for Engineering Experimentation"
English and European Soccer Results 1871-2016
Client for the 'Enigma' 'API'
Ecological Niche in R and GRASS
Automated Runs and Evaluations of Ecological Niche Models
Neuwirth miscellaneous
Data preprocessing and quality control for Illumina HumanMethylation450 and MethylationEPIC BeadChip
Ensemble Partial Least Squares Regression
A package dedicated to questionnaires
A package dedicated to questionnaires
An R Package for the Analysis of Multiple ChIP-Seq Data
Making Enriched Heatmaps
Seamless navigation through combined results of set-based and network-based enrichment analysis
Enrichment assessment of virtual screening approaches
Methods to Enrich R Objects with Extra Components
Resampling bias correction for large initial condition ensembles
Clustering of Categorical Data
Utilities to create and use an Ensembl based annotation database
Extensible Package for Parallel, Batch Training of Base Learners for Ensemble Modeling
Probabilistic Forecasting using Ensembles and Bayesian Model Averaging
Extensible Package for Cross-Validation-Based Integration of Base Learners
Ensemble Model Output Statistics
Extensible Package for Principal-Component-Regression-Based Heterogeneous Ensemble Meta-Learning
Extensible Classes and Methods for Penalized-Regression-Based Integration of Base Learners
Ensemble Models in R
R Interface to Ensembl Variant Effect Predictor
Ensure Values at Runtime
Entropy Partitioning to Measure Diversity
Estimation of Entropy, Mutual Information and Related Quantities
Estimation of Entropy and Related Quantities
Tools for Exploring Differential Shannon Entropy, Differential Coefficient of Variation and Differential Expression
Detection of Structural Changes in Climate and Environment Time Series
Various R Functions from the Kostas Lab
GC-MS Data Analysis for Environmental Science
Isotope Pattern, Profile and Centroid Calculation for Mass Spectrometry
Peak Picking for High Resolution Mass Spectrometry Data
Generation of ENVIREM Variables
Statistical Analysis of Environmental Space-Time Processes
Retrieval from the ENVISION bioinformatics data portal into R
Enveloping the Aster Model
Niche Estimation
Package for Environmental Statistics, Including US EPA Guidance
Easy Plots
Statistical Functions for the Censored and Uncensored Epanechnikov Distribution
Read Epanet Files into R
Gaussian Approximation of Bayesian Binary Regression Models
A Package for Statistical Analysis in Epidemiology
A Package for Statistical Analysis in Epidemiology
Elementary Epidemiological Functions for Epidemiology and Biostatistics
Implements Hierarchical Bayesian Models for Epidemiological Applications
Epidemiological Tool for Contact Tracing
Tools to Retrieve Economic Policy Institute Data Library Extracts
Epidemiological Data Display Package
Dynamic Models in Epidemiology
EpiEstim: a package to estimate time varying reproduction numbers from epidemic curves.
Flexible Modelling Functions for Epidemiological Data Analysis
DNA methylation and SNP calling for bisulfite sequencing data
Epigenetic and gene transcription data normalization and integration with mixture models
Mathematical Modeling of Infectious Disease
Epidemic/Network-Related Tools
EpiNetics
EpiNeticSeq
Tools for the Analysis of Epidemiological Data
Generalized Ridge Regression for Analysis of Interaction Effects
Basic Sensitivity Analysis of Epidemiological Results
Rothman's Episheet
Density Estimation with Soft Information by Exponential Epi-splines
Detecting Epistatic Selection with Partially Observed Genotype Data
Epidemiology Tools
Predict Binding Between Peptides and MHC Molecules
R Interface to epiviz web app
Data Management API for epiviz interactive visualization app
WebSocket server infrastructure for epivizr apps and packages
Run Epiviz Interactive Genomic Data Visualization App within R
Conversion Between Epidemiological Weeks and Calendar Dates
Plotting longitudinal series
Apply a Function Over Expressions
EPoC (Endogenous Perturbation analysis of Cancer)
Easy polynomial regression
Import 'Epidata' XML Files '.epx'
Extended-Quasi-Likelihood-Function (EQL)
EQS Output Conversion to lavaan Functions
Tools for analyzing eQTL experiments: A complementary to Karl Broman's 'qtl' package for genome-wide analysis
Observed-Score Linking and Equating
Direct, Chain and Average Equating Coefficients with Standard Errors Using IRT Methods
Provides Tests and Graphics for Assessing Tests of Equivalence
Automated Spectral Deconvolution, Alignment, and Metabolite Identification in GC/MS-Based Untargeted Metabolomics
Nonparametric Multiple Expectile Regression via ER-Boost
Assess Differential Gene Expression Experiments with ERCC Controls
Empirical Research in Economics with R
Fit, Simulate and Diagnose Exponential-Family Models for Networks
Fit, Simulate and Diagnose Exponential-Family Models for Networks with Count Edges
Fit, Simulate and Diagnose Exponential-Family Random Graph Models to Egocentrically Sampled Network Data
ERG Modeling Based on Graphlet Properties
Local Health Department network data set
Fit, Simulate and Diagnose Exponential-Family Models for Rank-Order Relational Data
User-specified terms for the statnet suite of packages
numerical solution of Ericsken-Leslie equations for 1D liquid crystal cells
Extended Rasch Modeling
Extended Rasch Modeling
epigenomic road map adventures
Significance Analysis of Event-Related Potentials Data
Event-Related Potential (ERP) Data Exploration Made Easy
Event-related potentials (ERP) analysis, graphics and utility functions
Event-related potentials (ERP) analysis, graphics and utility functions
Builds Error Intervals
Function Errorizer
Locate Errors with Validation Rules
Edge Selection
Estimate Number of Latent Factors and Factor Matrix for Factor Analysis
Extended Empirical Saddlepoint Density Approximation
Effect Size Computation for Meta Analysis
ESEA: Discovering the Dysregulated Pathways based on Edge Set Enrichment Analysis
Visualizations of expressionSet Bioconductor object
ESG - A package for asset projection
Toolkit for the simulation of financial assets and interest rates models.
Ensemble of Subset of K-Nearest Neighbours Classifiers for Classification and Class Membership Probability Estimation
Ecological Specificity Measures
Misc Functions of Eduard Szöcs
Wrappers for the Geospatial Data Abstraction Library (GDAL) Utilities
R Interface to e-Stat API
Calibrating Parameters for the Samejima's Continuous IRT Model
Estimation of Heritability in High Dimensional Sparse Linear Mixed Models using Variable Selection
Tools for Assessing Estimability of Linear Predictions
Estimate of Stromal and Immune Cells in Malignant Tumor Tissues from Expression Data
Estimates Output
Estimation and Simulation for PDMPs
Easy Table
Analysis of Eye-tracker data
Modeling Earthquake Data Using ETAS Model
Mixed FLP and ML Estimation of ETAS Space-Time Point Processes
Equivalence to control
Extract-Transform-Load Framework for Medium Data
Utility Functions to Execute Standard Extract/Transform/Load Operations (using Package 'ff') on Large Data
Empirical Transition Matrix
Epistasis Test in Meta-Analysis
Computes Moments of Univariate Truncated t Distribution
Client for 'etcd', a 'Key-value' Database
Cartesian plot and contingency test on 16S Microbial data
eulerian: A package to find eulerian paths from graphs
Area-Proportional Euler Diagrams
Package for intepretation of quantitative DNA mixtures
Calculations for DNA Mixtures
Calculations for DNA mixtures
Calculations for DNA mixtures, only R code
R Interface to the Europe PubMed Central RESTful Web Service
Historical Populations of European Cities, 1500-1800
Bayesian Single Arm Sample Size Calculation Software
Tools for Eurostat Open Data
Extreme Value Analysis with Goodness-of-Fit Testing
Dynamic Systems Estimation - Extensions
Parsing and Evaluation Tools that Provide More Details than the Default
Collection of Model Evaluation Measure Functions
Modelling Actual, Potential and Reference Crop Evapotranspiration
Evidential Distance-Based Classification
Evidential Clustering
Evidence Combination in R
Functions for Extreme Value Distributions
Bayesian Analysis in Extreme Value Theory
A Powerful Tool to Quickly Compare Huge Lists and Draw Venn Diagrams
Event History Procedures and Models
Sequential Event Interval Analysis
Store and manipulate event data
Store and manipulate event data
Event study and extreme event analysis
Event Trees for Hazard and Risk Analysis
Reporting Tools for Sensitivity Analysis of Evidence Factors in Observational Studies
Extreme Values in R
Extreme Values in R
Extreme Value Mixture Modelling, Threshold Estimation and Boundary Corrected Kernel Density Estimation
Comparative and Population Genetic Analyses
Tools for Evolutionary Quantitative Genetics
Calculation of Evolvability Parameters
Evolutionary Morphometric Simulation
Evolutionary Parameter Estimation for 'Repast Simphony' Models
Evolutionary Rates Across Gradients
Mean of order p, peaks over random threshold Hill and high quantile estimates
Evolutionary Learning of Globally Optimal Trees
Evolutionary Learning of Globally Optimal Trees
Edgeworth Expansion
Edge-Weighted Closeness
Expression Weighted Celltype Enrichment
Goodness-of-Fit Tests for the Exponential and Two-Parameter Weibull Distributions
Unconditional Exact Test
Exact Tests and Confidence Intervals for 2x2 Tables
Exact P-Values and Matching Confidence Intervals for Simple Discrete Parametric Cases
Inductive Confidence Intervals for the difference between two proportions
Monte Carlo Exact Tests for Log-linear models
Exact fixed effect meta analysis
Exact solution paths for regularized LASSO regressions with L_1 penalty
Exact Distributions for Rank and Permutation Tests
ExactSampling: risk evaluation using exact resampling methods for the k Nearest Neighbor algorithm.
Automatic Generation of Exams in R
Automatic Generation of Exams in R
Confidence regions for exceedance sets and contour lines
Convenient Data Exchange with Microsoft Excel
Interactive Exploration of Contour Data
Excursion Sets and Contour Credibility Regions for Random Fields
Execute scripts in exec directory of packages
Read EXIF Metadata from JPEGs
EXIF Image Data in R
R functions for the normalization of Exiqon miRNA array data
Exact Liebermann/Reshnikov and Bruhn-Suhr/Krumbholz plans
Copy number variant detection from exome sequencing read depth
Calls Copy Number Variants from Targeted Sequence Data
exome-based anlaysis of MeRIP-Seq data: peak calling and differential analysis
Convert Gene EXPression Data to FBA FLUXes
Feature Matrix Builder
Expanding Ploidy and Allele-Frequency on Nested Subpopulations
Modular Differential Evolution for Experimenting with Operators
Experimental Designs package
Pacote Experimental Designs (Portuguese)
Computation of implied expected returns
Modelling of expectiles
Expectile and Quantile Regression
experiment: R package for designing and analyzing randomized experiments
Client to access ExperimentHub resources
Add resources to ExperimentHub
Modeling without data using expert opinion
Exponential Integral and Incomplete Gamma Function
Explanation of Predictions for Classification and Regression Models
Interactive Interfaces for Results Exploration
GUI for exploratory data analysis of systems biology data
Tools for Quickly Exploring Data
Matrix Exponential, Log, 'etc'
Matrix Exponential, Log, 'etc'
Expokit in R
Exploratory analysis with the singular value decomposition.
Calculate density dependent likelihood of a phylogenetic tree
Spatial analysis of extra-pair paternity
Download datasets from EMBL-EBI Expression Atlas
Visualize biclusters identified in gene expression data
Rapid Implementation of Machine Learning Algorithms for Genomic Data
Data Sets from "Forecasting with Exponential Smoothing"
Some Useful Functions from Spreadsheets and 'SPSS' Statistics
Tests for Exponentiality
Fast, Reliable and Elegant Reproducible Research
Extreme Regression of Quantiles
Convenience Functions for Botanists to Create Specimens Indices
Extending the Range of Functions for Probability Distributions
Breiman and Cutler's random forests for classification and regression
Constructs the Exterior Match from Two Matched Control Groups
Additional Funnel Plot Augmentations
Maximum penalized likelihood estimation with extended lasso penalty
Extra-binomial approach for pooled sequencing data
Categorical Data Analysis and Visualization
Additional Univariate and Multivariate Distributions
Tools for using fonts
Package for holding the database for the extrafont package
Extremely Randomized Trees (ExtraTrees) Method for Classification and Regression
Extremal Dependence Models
Extreme Bounds Analysis (EBA)
Estimation of Extreme Conditional Quantiles and Probabilities
Extreme Value Analysis
Extreme Value Statistics and Quantile Estimation
Univariate Outlier Detection
Estimation of Extreme Value Dependence for Time Series Data
Estimate Lower Extreme Quantile with the Censored Weibull MLE and Censored Weibull Mixture
Load Raw Data from Eyelink Eye Trackers
Eyetracking Helper Functions
Eye-Tracking Data Analysis
Easy Analysis and Visualization of Factorial Experiments
Modeling Human Response Times and Accuracy using the EZ/EZ2 Diffusion Model
Easy Interface to Effective Concentration Calculations
selects significant non-additive interaction between two variables using fast GLM implementation.
Avoid the Typical Working Directory Pain When Using 'knitr'
provide an easy to use framework to conduct simulation
Generate Data Summary in a Tidy Format
FAB Confidence Intervals
FABIA: Factor Analysis for Bicluster Acquisition
Autoregressive Conditional Duration Models in R
Fast Covariance Estimation for Sparse Functional Data
Feature-based association and gene-set enrichment for copy number alteration analysis in cancer
Bayesian Sparse Factor Analysis model for the inference of pathways responsive to drug treatment
Factorial designed microarray experiment analysis
Factor Mixture Analysis with covariates
Maximum Likelihood Factor Analysis
Combination of Factorial Methods and Cluster Analysis
Extract and Visualize the Results of Multivariate Data Analyses
Multivariate Exploratory Data Analysis and Data Mining
Factor Analytics
Functions for performing factor analysis on financial time series
Simultaneous Change-Point and Factor Analysis
Machine Learning with Higher-Order Factorization Machines
Graphical Presentation of Simple Contrasts
factorplot
Bayesian quantile regression factor models
Identification of the Factors Affecting Species Richness
Bayesian Estimation of (Sparse) Latent Factor Stochastic Volatility Models
Perform Factorial Analysis from 'FactoMineR' with a Shiny Application
Scores the FACT and FACIT Family of Patient-Reported Outcome Measures
thin wrapper for the Factual.com server API
Variable Selection for Supervised Classification in High Dimension
Distributions that are Sometimes Used in Hydrology
Data from the Book "Multivariate Statistical Modelling Based on Generalized Linear Models", First Edition, by Ludwig Fahrmeir and Gerhard Tutz
File Abstraction Interface Layer (FAIL)
Factor Analysis in R
Faisal Conjoint Model: A New Approach to Conjoint Analysis
Generate fake geographies
Simulates Data from a Data Frame of Different Variable Types
Finding Allele-Specific Copy Number in Next-Generation Sequencing Data
Finding Allele-Specific Copy Number in Whole-Exome Sequencing Data
Pedigree Analysis and Familial Aggregation
Interface for FAME Time Series Database
Family Age-at-Onset Data Simulation and Penetrance Estimation
Probabilities for Pedigrees Given DNA Data
A Convex Formulation for Modeling Interactions with Strong Heredity
Maximum Likelihood and Bayesian Estimation of Univariate Probability Distributions
Factor Analysis for Multiple Testing (FAMT) : simultaneous tests under dependence in high-dimensional data
Penalized Likelihood Factor Analysis via Nonconvex Penalty
Nonparametric Analysis of Covariance
A Fancy Version of 'base::cut'
Building Kriging Models from FANOVA Graphs
Visualisation of Sequential Probability Distributions Using Fan Charts
Download Data from the FAOSTAT Database of the Food and Agricultural Organization (FAO) of the United Nations
Influential Case Detection Methods for Factor Analysis and Structural Equation Models
Modelization for Functional AutoRegressive Processes
Functions and Datasets for Books by Julian Faraway
A Faster 'ARFF' File Reader and Writer
ARMA Time Series Modelling
Rmetrics - Modelling ARMA Time Series Processes
FARMS - Factor Analysis for Robust Microarray Summarization
Translate integers into persian
EBM and Asian Option Valuation
Rmetrics - EBM and Asian Option Valuation
Rmetrics - Analysing and Modelling Financial Assets
Rmetrics - Analysing and Modelling Financial Assets
VARIANCE COMPONENT BASED MULTI-MARKER ASSOCIATION TEST USING FAMILY AND UNRELATED DATA
Implementation of the Fourier Amplitude Sensitivity Test (FAST)
a Fast Implementation of Adaboost
Fast Estimation of a Covariance Matrix by Banding the Cholesky Factor
A Fast Solver for Parameterized LP Problems, Constrained L1 Minimization Approach to Sparse Precision Matrix Estimation and Dantzig Selector
Fast Hierarchical Clustering Routines for R and Python
Significant Interval Discovery with Categorical Covariates
Lasso and elastic-net penalized Cox's regression in high dimensions models using the cocktail algorithm
Fast, Low Memory-Footprint Digests of R Objects
Raster Image Processing and Vector Recognition
Fast Rcpp implementation of Gauss-Hermite quadrature
Efficiently Using Gaussian Processes with Rcpp and RcppEigen
Fast Drawing and Shading of Graphs of Statistical Distributions
Robust Algorithm for Principal Component Analysis
Hierarchical Independent Component Analysis: a Multi-Scale Sparse Non-Orthogonal Data-Driven Basis
The Elliptical Slice Sampler for Bayesian Horseshoe Regression
FastICA Algorithms to perform ICA and Projection Pursuit
Learn from Training Data then Quickly Fill in Missing Data
Efficient Jonckheere-Terpstra Test Statistics for Robust Machine Learning and Genome-Wide Association Studies
A Fast Multiple-Kernel Method Based on a Low-Rank Approximation
Fast k-Nearest Neighbors
functions for genome-wide application of Liquid Association
Fast Linear Step Up Procedure of Benjamini–Hochberg FDR Method for Huge-Scale Testing Problems
Fast Computation of Multivariate M-estimators
Fast match() function
Large-Scale Social Network Analysis
FastPCS Robust Fit of Multivariate Location and Scatter
Fast Pseudo Observations
Foundations and Applications of Statistics Using R
Data sets and utilities for Foundations and Applications of Statistics by R Pruim
Fits the FastRCS Robust Multivariable Linear Regression Model
Fast Interactive Framework for Web Scripting Using R
fastseg - a fast segmentation algorithm
Fast Calculation of Spillover Measures
Fast Utility Function for Time Parsing and Conversion
Two-Locus Family-Based Association Test with Polytomic Outcome
Kiener Distributions and Fat Tails in Finance
Fault Trees for Risk and Reliability Analysis
Interaction between FaultTree on R and SCRAM
HTTP Error Helpers
A Dataset of Favourite Numbers
Functions and Datasets for "Forest Analytics with R"
An Extensible Approach to Flux Balance Analysis
Rmetrics - Markets and Basic Statistics
Rmetrics - Markets and Basic Statistics
Gene by Environment Interaction and Conditional Gene Tests for Nuclear Families
Algorithm for Searching the Space of Gaussian Directed Acyclic Graph Models Through Moment Fractional Bayes Factors
FISH Based Normalization and Copy Number inference of SNP microarray data
Bonds and Interest Rate Models
Rmetrics - Pricing and Evaluating Bonds
Analyzing and Managing Facebook Ads from R
Association Football (Soccer) Ranking via Poisson Regression
Fast Algorithms to Bootstrap Receiver Operating Characteristics Curves
functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasets
Fused Community Detection
Basics of Certificates and Structured Products Valuation
fCertificates - Basics of Certificates and Structured Products Valuation
Fatigue Crack Growth in Reliability
f-divergence Cutoff Index for Differential Expression Analysis in Transcriptomics and Proteomics
Fuzzy Clustering
Fuzzy Cognitive Mapping
Fast Compressed Neural Networks for R
Rmetrics - Bivariate Dependence Structures with Copulae
Rmetrics - Bivariate Dependence Structures with Copulae
A Method to Search for Differentially Expressed Genes and to Detect Recurrent Chromosomal Copy Number Aberrations
Measuring functional diversity (FD) from multiple traits, and other tools for functional ecology
Measuring functional diversity (FD) from multiple traits, and other tools for functional ecology
Functional Data Analysis
Functional Data Analysis
Functional Data Analysis: K-Mean Alignment
Functional data analysis in a mixed model framework
Functional Data Analysis and Empirical Dynamics
Functional Data Analysis and Partial Differential Equations; Statistical Analysis of Functional and Spatial Data, Based on Regression with Partial Differential Regularizations
Elastic Functional Data Analysis
Interval Testing Procedure for Functional Data
Functional Data Analysis and Utilities for Statistical Computing
Boosting Functional Regression Models
Boosting Functional Regression Models
Analysis of Covariance Operators
Multivariate Dependence with FDG Copulas
Methods for Multivariate or Functional Data
Forest Data Quality
FDR adjustments of Microarray Experiments (FDR-AME)
Permutation-Based FDR Point and Confidence Interval Estimation
False Discovery Rate Procedure Under Discrete Null Distributions
False discovery rate regression
Compute Sample Size that Meets Requirements for Average Power and FDR
Estimation of (Local) False Discovery Rates and Higher Criticism
Functional data sets
Frequency Distribution Tables, Histograms and Polygons
Scores Features for Feature Selection
R Bindings to the Feather 'API'
Local Inferential Feature Significance for Multivariate Kernel Density Estimation
Creates a Model Matrix via Feature Hashing with a Formula Interface
Feature Extraction for Discretely-Sampled Functional Data
Fechnerian Scaling of Discrete Object Sets
Economic and Financial Data Sets
Fishing Effort Calculator in R
Functions to Automate Downloading Geospatial Data Available from Several Federated Data Sources
Client Package for the U.S. Federal Register API
Analysis of Feedback in Time Series
Read RSS/Atom Feeds from R
Identification of Functional Epigenetic Modules
Fixed Effects Nonlinear Maximum Likelihood Models
Fermi Large Area Telescope Catalogs
Exotic Option Valuation
Rmetrics - Pricing and Evaluating Exotic Option
fExpressCertificates - Structured Products Valuation for ExpressCertificates/Autocallables
fExpressCertificates - Structured Products Valuation for ExpressCertificates/Autocallables
Rmetrics - Modelling Extreme Events in Finance
Rmetrics - Extreme Financial Market Data
memory-efficient storage of large data on disk and fast access functions
Basic Statistical Functions for Package 'ff'
Freedom from Disease
Freedom from Disease
Force field simulation for a set of points
Fifty-fifty MANOVA
Quality assessment and control for FFPE microarray expression data
Forgetting Factor Methods for Change Detection in Streaming Data
Fast- and Frugal Tree Analysis
Generate, Visualise, and Compare Fast and Frugal Decision Trees
Fast FFT and DCT based on FFTW
Wrapper for FFTW3: Includes 1-D, Univariate and Multivariate, and 2-D Transform
Generalized Archimedean Copula
Flury and Gautschi algorithms
Rmetrics - Autoregressive Conditional Heteroskedastic Modelling
Rmetrics - Modelling Autoregressive Conditional Heteroskedasticity
Floating Grid Method
Forest Growth Model Utilities
Fractional Gaussian Noise and power law decay time series model fitting
Functional Gene Networks derived from biological enrichment analyses
Fast Goodness-of-fit Test
Floating Grid Permutation Technique
Floating Grid Permutation Technique
Fast Gene Set Enrichment Analysis
Feature Grouping and Selection Over an Undirected Graph
Function GUI
Fantastic Heatmap
Tests for Right and Interval-Censored Survival Data Based on the Fleming-Harrington Class
Provide functions for forest inventory calculations
Retrospective Noise Control for fMRI
Classical, Reloaded and Adaptive FastICA Algorithms
Tools for Spatial Data
Random Fields (and Bridges) Simulations
A Lightweight and Flexible Web Framework
A Biostatisticians Toolbox for Various Activities, Including Plotting, Data Cleanup, and Data Analysis
Map Data to Visualize the Fifty U.S. States with Alaska and Hawaii Insets
Simple Key-Value Database
Simple key-value database using SQLite
File-Backed Matrix Class with Convenient Read and Write Access
Easy Management of File Names
Chunk Processing or Split-Apply-Combine on Delimited Files and Distributed Dataframes
Effective File Navigation from the R Console
Rmetrics - Importing Economic and Financial Data
Rmetrics - Economic and Financial Data Import
Financial Analysis and Regression Diagnostic Analysis
Solving financial problems in R
Financial Instrument Model Infrastructure for R
Financial Instrument Model Infrastructure for R
Financial Mathematics for Actuaries
Classifies implicit trading activity from market quotes and computes the probability of informed trading
Time Value of Money, Time Series Analysis and Computational Finance
Parse Darwin Core Files
Methods for estimating covariance matrices
Covariance Matrix Estimation and Regularization for Finance
Find all root(s) of the equation and Find root(s) of the equation by dichotomy
Finding Heterogeneous Treatment Effects
Find Models with Minimum IC
Microbial Comparative Genomics in R
Python tools to find an acceptable python binary
A View Generator for Multidimensional Data
Fine-Scale Population Analysis
Functions for Processing Binary Fingerprint Data
Functions to operate on binary fingerprint data
Computation of the Probability of Ruin Within a Finite Time Horizon
Financial Data from U.S. Securities and Exchange Commission
Companion to Tsay (2005) Analysis of Financial Time Series
Companion to Tsay (2005) Analysis of Financial Time Series
FIRMAGene - differential splicing for Affymetrix Gene 1.0 ST
FISHalyseR a package for automated FISH quantification
The Fisher-EM algorithm
Fisheye and Hyperbolic-space-alike Interactive Visualization Tools in R
Fisheye and Hyperbolic-space-alike Interactive Visualization Tools in R
Iterative FISH-based Calibration of Hi-C Data
Dataset of Measurements of Fish Species at Kirkkojarvi Lake, Finland
Dataset of Measurements of Fish Species at Kirkkojarvi Lake, Finland
Fishery Science Methods and Models in R
Fits Poisson-Sum-of-Gammas GLMs, Tweedie GLMs, and Delta Log-Normal Models
Prediction of Fish Movement Parameters
Transcriptomic Dynamics Models in Field Conditions
NONMEM platform
Subset AR Model Fitting
FitARMA: Fit ARMA or ARIMA using fast MLE algorithm
Scrapes Data from Fitbit
Personalized Coach for Fitbit and R API
Garmin FIT File Decoder
Help to Fit of a Parametric Distribution to Non-Censored or Censored Data
Help to Fit of a Parametric Distribution to Non-Censored or Censored Data
Fitting Density Ratio Classes
Confidence estimation for intra-chromosomal contact maps
Fitting mixture of skew t distribution
fit.models
fit.models
General solvers for the general Black-Scholes (Fokker Planck) partial differential equation (PDE) in a multi-dimensional setting with main application in finance (option pricing).
Fit Hydraulic Vulnerability Curves
FITS (Flexible Image Transport System) Utilities
fitTetra is an R package for assigning tetraploid genotype scores
Fit Univariate Distributions
Data and Code Behind the Stories and Interactives at 'FiveThirtyEight'
The Distribution of Distances Between Discrete Events in Fixed Time
Fixed Sequence Multiple Testing Procedures
Fizz Buzz Implementation
Fast Kalman Filter
Fast Kalman Filter
Feature-Based Landscape Analysis of Continuous and Constraint Optimization Problems
Analysis of Metabolomics GC/MS Data
Fits Piecewise Constant Models with Data-Adaptive Knots
FLuctuation ANalysis on Mutation Models
Family of Lasso Regression
Functional LARS
Implementation of optimal hierarchical clustering
Generic classes and methods for stock assessment models
Bio-Economic Impact Assessment of Management strategies using FLR
Core package of FLR, fisheries modelling in R.
Exploratory Data Analysis for FLR
Example datasets for FLR manuals and tutorials
Flexible Bayesian Inference
Flexible Cluster Algorithms
Flexible Cluster-Weighted Modeling
R Markdown Format for Flexible Dashboards
Flexible Mixture Modeling
Tools to Fit Flexible Parametric Curves
Flexible Parametric Models for Censored and Truncated Data
Flexible Relative Survival
Flexible Parametric Survival and Multi-State Models
Flexible parametric survival models
Don't Get Stuck with Stacks in R
Classify Night Flight Calls Based on Acoustic Measurements
Hidden Markov Model for Solar Geolocation Archival Tags
Farewell’s Linear Increments Model
Multivariate Permutation Tests
Fast lasso-based isoform prediction as a flow problem
Dithionite Scramblase Assay Analysis
Fused Lasso Latent Feature Model
Process Synchronization Using File Locks
Process Synchronization Using File Locks
Statistical Methods for the (Regional) Analysis of Flood Frequency
Tools for Interacting with the Brazilian Flora 2020
Automatic and interactive quality control for flow cytometry data
flowBeads: Analysis of flow bead data
Combining multitube flow cytometry data by binning
Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells
Analyze flow cytometric data using histogram information
Semantic labelling of flow cytometric cell populations
flowClean
Clustering for Flow Cytometry
flowCore: Basic structures for flow cytometry data
Analyze flow cytometric data using gate information
Sequential Flow Cytometry Data Gating
Cytometric Diversity Indices from 'FlowJo' Workspaces
Tools for characterizing flowering traits
Forecasts future values of a univariate time series.
Estimate proliferation in cell-tracking dye studies
Tools for extracting information from a FlowJo workspace and working with the data in the flowCore paradigm.
Fingerprinting for Flow Cytometry
Mapping cell populations in flow cytometry data for cross-sample comparisons using the Friedman-Rafsky Test
Matching and meta-clustering in flow cytometry
Non-parametric Flow Cytometry Data Gating
Cluster Merging for Flow Cytometry Data
An R package for flow data clustering
Methods for Continuous Flow Cytometry
Analyze flow cytometer data to determine sample ploidy
flowPlots: analysis plots and data class for gated flow cytometry data
Quality control for flow cytometry
Automated Quadratic Characterization of Flow Cytometer Instrument Sensitivity: Q, B and CV instrinsic calculations
Streamlining Design and Deployment of Complex Workflows
FlowRepository R Interface
Flow Selection and Analysis
Daily Streamflow Trend and Change Point Screening
Using self-organizing maps for visualization and interpretation of cytometry data
Statistical methods for the analysis of flow cytometry data
Parameter Optimization for Flow Cytometry Data Transformation
Phenotyping Flow Cytometry Assays
Utilities for flow cytometry
Visualization for flow cytometry
Variance stabilization in flow cytometry (and microarrays)
Infrastructure for representing and interacting with the gated cytometry
Fuzzy Logic Rule Classifier
Path algorithm for the general Fused Lasso Signal Approximator
Multi-Threaded Multidimensional Fixed Size Subset Sum Solver and Extension to General-Purpose Knapsack Problem
Data Sets from Flury, 1997
Flux rate calculation from dynamic closed chamber measurements
eXtended Survivor Analysis for FLR
Data Sets from "Forecasting: Methods and Applications" by Makridakis, Wheelwright & Hyndman (1998)
R Package for Estimation, Simulation and Forecasting of a Univariate Markov Switching Model
Financial Market Building Blocks
Mismatch Tolerant Maximum Common Substructure Searching
Financial Market Date Calculations
A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability and Monte Carlo Analysis
A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability and Monte Carlo Analysis
Filtered Monotonic Polynomial IRT Models
Analysis of fMRI Experiments
Variable Selection in Finite Mixture of AFT Regression and FMR
Functions for Medical Statistics Book with some Demographic Data
Regression Models with Finite Mixtures of Skew Heavy-Tailed Errors
Finite Moment Stable Distributions
Variance estimation of FMT method (Fully Moderated t-statistic)
Rmetrics - Analysing and Modeling Multivariate Financial Return Distributions
Rmetrics - Analysing and Modeling Multivariate Financial Return Distributions
Fast Nearest Neighbor Search Algorithms and Applications
Rmetrics - Nonlinear and Chaotic Time Series Modelling
Nonlinear and Chaotic Time Series Modelling
greedy variable selection
Detection of focal aberrations in DNA copy number data
Summarizes CRAN Check Results in the Terminal
Fonts with 'Bitstream Vera Fonts' License
Computer Modern font for use with extrafont package
Liberation Fonts
Set of Installed Fonts
visualisation and analysis of food web networks
Generating food webs
Rmetrics - Pricing and Evaluating Basic Options
Rmetrics - Pricing and Evaluating Basic Options
Forecasting with Artificial Intelligence
Foraminifera and Community Ecology Analyses
Tools for Working with Categorical Variables (Factors)
Provides Foreach Looping Construct for R
Provides Foreach Looping Construct for R
Forecastable Component Analysis
Forecasting Functions for Time Series and Linear Models
Forecast Combinations
Convenient Functions for Ensemble Time Series Forecasts
Forecasting for Stationary and Non-Stationary Time Series
Forecasting Time Series by Theta Models
Floating-Point Genetic Algorithms with Statistical Forecast Based Inheritance Operator
Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, Weka, dBase, ...
Statistical Methods in Forensic Genetics
Quantification and evaluation tools for forensic document examiners
Statistical tools for the interpretation of forensic DNA mixtures
Statistical tools for the interpretation of forensic DNA mixtures
Visualizes Random Forests with Feature Contributions
Visualizes Random Forests with Feature Contributions