All R packages

A3
Accurate, Adaptable, and Accessible Error Metrics for Predictive Models
a4
Automated Affymetrix Array Analysis Umbrella Package
a4Base
Automated Affymetrix Array Analysis Base Package
a4Classif
Automated Affymetrix Array Analysis Classification Package
a4Core
Automated Affymetrix Array Analysis Core Package
a4Core
Automated Affymetrix Array Analysis Core Package
a4Preproc
Automated Affymetrix Array Analysis Preprocessing Package
a4Reporting
Automated Affymetrix Array Analysis Reporting Package
a4Reporting
Automated Affymetrix Array Analysis Reporting Package
ABAEnrichment
Gene expression enrichment in human brain regions
ABarray
Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.
abbyyR
Access to Abbyy Optical Character Recognition (OCR) API
abc
Tools for Approximate Bayesian Computation (ABC)
ABCanalysis
Computed ABC Analysis
abc.data
Data Only: Tools for Approximate Bayesian Computation (ABC)
abcdeFBA
ABCDE_FBA: A-Biologist-Can-Do-Everything of Flux Balance Analysis with this package.
ABCoptim
Implementation of Artificial Bee Colony (ABC) Optimization
ABCp2
Approximate Bayesian Computational Model for Estimating P2
ABC.RAP
Array Based CpG Region Analysis Pipeline
abcrf
Approximate Bayesian Computation via Random Forests
abctools
Tools for ABC Analyses
abd
The Analysis of Biological Data
abd
The Analysis of Biological Data
abf2
Load Gap-Free Axon ABF2 Files
ABHgenotypeR
Easy Visualization of ABH Genotypes
abind
Combine Multidimensional Arrays
abind
Combine Multidimensional Arrays
abmi
Data Processing and Analysis for the Alberta Biodiversity Monitoring Institute
abmiOld
Data Processing and Analysis for the Alberta Biodiversity Monitoring Institute
abn
Modelling Multivariate Data with Additive Bayesian Networks
abodOutlier
Angle-Based Outlier Detection
abrem
Abernethy Reliability Methods
abremDebias
Maximum Likelihood Estimation Models for Reliability Analysis
abremout
Output functions for the Abernethy Reliability Methods package (abrem), including plotting.
abremPivotals
Linear Rank Regression Models with Pivotal Monte Carlo Methods for Reliability Analysis
AbsFilterGSEA
Improved False Positive Control of Gene-Permuting GSEA with Absolute Filtering
ABSSeq
ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences
abundant
Abundant regression and high-dimensional principal fitted components
ACA
Abrupt Change-Point or Aberration Detection in Point Series
acc
Functions for Processing and Analyzing Accelerometer Data
accelerometry
Functions for Processing Minute-to-Minute Accelerometer Data
accelerometry
Functions for Processing Minute-to-Minute Accelerometer Data
accelmissing
Missing Value Imputation for Accelerometer Data
AcceptABEL
A package for controlling false positives rate in GWAS by estimating local inflation factor
AcceptanceSampling
Creation and Evaluation of Acceptance Sampling Plans
ACCLMA
ACC & LMA Graph Plotting
accrual
Bayesian Accrual Prediction
accrued
Data Quality Visualization Tools for Partially Accruing Data
ACD
Categorical data analysis with complete or missing responses
acde
Artificial Components Detection of Differentially Expressed Genes
ACDm
Tools for Autoregressive Conditional Duration Models
acebayes
Optimal Bayesian Experimental Design using the ACE Algorithm
acepack
ACE and AVAS for Selecting Multiple Regression Transformations
ACEt
Estimating Dynamic Heritability and Twin Model Comparison
ACEt
Estimating Dynamic Heritability and Twin Model Comparison
aCGH
Classes and functions for Array Comparative Genomic Hybridization data.
acid
Analysing Conditional Income Distributions
acm4r
Align-and-Count Method comparisons of RFLP data
ACME
Algorithms for Calculating Microarray Enrichment (ACME)
acmeR
Implements ACME Estimator of Bird and Bat Mortality by Wind Turbines
ACNE
Affymetrix SNP Probe-Summarization using Non-Negative Matrix Factorization
acnr
Annotated Copy-Number Regions
acnr
Annotated Copy-Number Regions
acopula
Modelling dependence with multivariate Archimax (or any user-defined continuous) copulas.
acp
Autoregressive Conditional Poisson
aCRM
Convenience functions for analytical Customer Relationship Management
AcrossTic
A Cost-Minimal Regular Spanning Subgraph with TreeClust
acs
Download, Manipulate, and Present American Community Survey and Decennial Data from the US Census
ACSNMineR
Gene Enrichment Analysis from ACSN Maps or GMT Files
acss
Algorithmic Complexity for Short Strings
acss.data
Data Only: Algorithmic Complexity of Short Strings (Computed via Coding Theorem Method)
ACSWR
A Companion Package for the Book "A Course in Statistics with R"
ACTCD
Asymptotic Classification Theory for Cognitive Diagnosis
Actigraphy
Actigraphy Data Analysis
activity
Animal Activity Statistics
activpalProcessing
Process activPAL Events Files
actuar
Actuarial Functions and Heavy Tailed Distributions
ActuDistns
Functions for actuarial scientists
ada
The R Package Ada for Stochastic Boosting
adabag
Applies Multiclass AdaBoost.M1, SAMME and Bagging
ADaCGH2
Analysis of big data from aCGH experiments using parallel computing and ff objects
adagio
Discrete and Global Optimization Routines
adagio
Discrete and Global Optimization Routines
AdapEnetClass
A Class of Adaptive Elastic Net Methods for Censored Data
adapr
Implementation of an Accountable Data Analysis Process
adaptDA
Adaptive Mixture Discriminant Analysis
AdaptFit
Adaptive Semiparametic Regression
AdaptFitOS
Adaptive Semiparametric Regression with Simultaneous Confidence Bands
AdaptGauss
Gaussian Mixture Models (GMM)
AdaptiveSparsity
Adaptive Sparsity Models
adaptivetau
Tau-Leaping Stochastic Simulation
adaptMCMC
Implementation of a generic adaptive Monte Carlo Markov Chain sampler
adaptsmoFMRI
Adaptive Smoothing of FMRI Data
adaptTest
Adaptive two-stage tests
ADCT
Adaptive Design in Clinical Trials
addhaz
Binomial and Multinomial Additive Hazards Models
addhazard
Fit Additive Hazards Models for Survival Analysis
addinslist
Discover and Install Useful RStudio Addins
additivityTests
Additivity Tests in the Two Way Anova with Single Sub-class Numbers
addreg
Additive Regression for Discrete Data
ADDT
Analysis of Accelerated Destructive Degradation Test Data
ade4
Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences
ade4
Analysis of Ecological Data : Exploratory and Euclidean Methods in Environmental Sciences
ade4TkGUI
'ade4' Tcl/Tk Graphical User Interface
ade4TkGUI
'ade4' Tcl/Tk Graphical User Interface
adegenet
Exploratory Analysis of Genetic and Genomic Data
adegraphics
An S4 Lattice-Based Package for the Representation of Multivariate Data
adegraphics
An S4 Lattice-Based Package for the Representation of Multivariate Data
adehabitat
Analysis of Habitat Selection by Animals
adehabitatHR
Home Range Estimation
adehabitatHS
Analysis of Habitat Selection by Animals
adehabitatLT
Analysis of Animal Movements
adehabitatMA
Tools to Deal with Raster Maps
adephylo
adephylo: exploratory analyses for the phylogenetic comparative method.
adephylo
adephylo: exploratory analyses for the phylogenetic comparative method.
AdequacyModel
Adequacy of Probabilistic Models and General Purpose Optimization
adespatial
Multivariate Multiscale Spatial Analysis
adespatial
Multivariate Multiscale Spatial Analysis
ADGofTest
Anderson-Darling GoF test
ADGofTest
Anderson-Darling GoF test
adhoc
calculate ad hoc distance thresholds for DNA barcoding identification
adimpro
Adaptive Smoothing of Digital Images
AdjBQR
Adjusted Bayesian Quantile Regression Inference
adlift
An adaptive lifting scheme algorithm
ADM3
An Interpretation of the ADM method - automated detection algorithm.
admbsecr
SECR models with supplementary location information
AdMit
Adaptive Mixture of Student-t distributions
admixturegraph
Admixture Graph Manipulation and Fitting
ADMMnet
Regularized Model with Selecting the Number of Non-Zeros
ADPclust
Fast Clustering Using Adaptive Density Peak Detection
ads
Spatial point patterns analysis
adSplit
Annotation-Driven Clustering
AdvBinomApps
Upper Clopper-Pearson Confidence Limits for Burn-in Studies under Additional Available Information
advclust
Object Oriented Advanced Clustering
advclust
Object Oriented Advanced Clustering
advfclust
Fuzzy Clustering (Ensembling and Optimization)
adwave
Wavelet Analysis of Genomic Data from Admixed Populations
AEDForecasting
Change Point Analysis in ARIMA Forecasting
AEM
Tools to construct Asymmetric eigenvector maps (AEM) spatial variables
aemo
Download and Process AEMO Price and Demand Data
AER
Applied Econometrics with R
AF
Model-Based Estimation of Confounder-Adjusted Attributable Fractions
afe
Analysis of Factorial Experiments
afex
Analysis of Factorial Experiments
afex
Analysis of Factorial Experiments
affxparser
Affymetrix File Parsing SDK
affy
Methods for Affymetrix Oligonucleotide Arrays
affycomp
Graphics Toolbox for Assessment of Affymetrix Expression Measures
AffyCompatible
Affymetrix GeneChip software compatibility
affyContam
structured corruption of affymetrix cel file data
affycoretools
Functions useful for those doing repetitive analyses with Affymetrix GeneChips
AffyExpress
Affymetrix Quality Assessment and Analysis Tool
affyILM
Linear Model of background subtraction and the Langmuir isotherm
affyio
Tools for parsing Affymetrix data files
affylmGUI
GUI for limma package with Affymetrix microarrays
affyPara
Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays
affypdnn
Probe Dependent Nearest Neighbours (PDNN) for the affy package
affyPLM
Methods for fitting probe-level models
affyQCReport
QC Report Generation for affyBatch objects
AffyRNADegradation
Analyze and correct probe positional bias in microarray data due to RNA degradation
AffyTiling
Easy extraction of individual probes in Affymetrix tiling arrays
AFLP
Analysis of AFLP data
AFLPsim
Hybrid Simulation and Genome Scan for Dominant Markers
AFM
Atomic Force Microscope Image Analysis
after
Run Code in the Background
aftgee
Accelerated Failure Time Model with Generalized Estimating Equations
AGD
Analysis of Growth Data
AGDEX
Agreement of Differential Expression Analysis
AggregateR
Aggregate Numeric, Date and Categorical Variables by an ID
agilp
Agilent expression array processing package
AgiMicroRna
Processing and Differential Expression Analysis of Agilent microRNA chips
agop
Aggregation Operators and Preordered Sets
agRee
Various Methods for Measuring Agreement
Agreement
Statistical Tools for Measuring Agreement
agricolae
Statistical Procedures for Agricultural Research
agridat
Agricultural Datasets
agrmt
Calculate Agreement or Consensus in Ordered Rating Scales
agrmt
Calculate Agreement or Consensus in Ordered Rating Scales
AGSDest
Estimation in Adaptive Group Sequential Trials
agsemisc
Miscellaneous plotting and utility functions
ahaz
Regularization for semiparametric additive hazards regression
AhoCorasickTrie
Fast Searching for Multiple Keywords in Multiple Texts
ahp
Analytic Hierarchy Process
AHR
Estimation and Testing of Average Hazard Ratios
AICcmodavg
Model Selection and Multimodel Inference Based on (Q)AIC(c)
AID
Estimation of Box-Cox Power Transformation Parameter
aidar
Tools for reading AIDA (http://aida.freehep.org/) files into R
AIM
AIM: adaptive index model
aimPlot
Create Pie Like Plot for Completeness
AIMS
AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype
Ake
Associated Kernel Estimations
akima
Interpolation of Irregularly and Regularly Spaced Data
akmeans
Adaptive Kmeans algorithm based on threshold
ALA
Data sets and examples for the book "Applied Longitudinal Analysis"
ALA4R
Atlas of Living Australia (ALA) Data and Resources in R
alabama
Constrained Nonlinear Optimization
alabama
Constrained nonlinear optimization
alakazam
Immunoglobulin Clonal Lineage and Diversity Analysis
ald
The Asymmetric Laplace Distribution
ALDEx2
Analysis Of Differential Abundance Taking Sample Variation Into Account
ALDqr
Quantile Regression Using Asymmetric Laplace Distribution
alfa
Apache Log File Analysis
aLFQ
Estimating Absolute Protein Quantities from Label-Free LC-MS/MS Proteomics Data
AlgDesign
Algorithmic Experimental Design
AlgebraicHaploPackage
Haplotype Two Snips Out of a Paired Group of Patients
algorithmia
Allows you to Easily Interact with the Algorithmia Platform
algstat
Algebraic statistics in R
AlignStat
Comparison of Alternative Multiple Sequence Alignments
alineR
Alignment of Phonetic Sequences Using the 'ALINE' Algorithm
ALKr
Generate Age-Length Keys for fish populations
allan
Automated Large Linear Analysis Node
allanvar
Allan Variance Analysis
alleHap
Allele Imputation and Haplotype Reconstruction from Pedigree Databases
allelematch
Identifying unique multilocus genotypes where genotyping error and missing data may be present
AlleleRetain
Allele Retention, Inbreeding, and Demography
allelic
A fast, unbiased and exact allelic exact test
AllelicImbalance
Investigates Allele Specific Expression
AllPossibleSpellings
Computes all of a word's possible spellings.
alluvial
Alluvial Diagrams
alm
R Client for the Lagotto Altmetrics Platform
alpha
Robust Cronbach's alpha with missing and non-normal data
alphahull
Generalization of the Convex Hull of a Sample of Points in the Plane
alphaOutlier
Obtain Alpha-Outlier Regions for Well-Known Probability Distributions
alphashape3d
Implementation of the 3D Alpha-Shape for the Reconstruction of 3D Sets from a Point Cloud
alpine
alpine
alplot
Plot array lists
alr
alternating logistic regression
alr3
Data to accompany Applied Linear Regression 3rd edition
alr3
Data to accompany Applied Linear Regression 3rd edition
alr4
Data to accompany Applied Linear Regression 4rd edition
alr4
Data to accompany Applied Linear Regression 4th edition
ALS
Multivariate Curve Resolution Alternating Least Squares (MCR-ALS)
alsace
ALS for the Automatic Chemical Exploration of mixtures
ALSCPC
Accelerated line search algorithm for simultaneous orthogonal transformation of several positive definite symmetric matrices to nearly diagonal form.
ALSM
Companion to Applied Linear Statistical Models
altcdfenvs
alternative CDF environments (aka probeset mappings)
altmeta
Alternative Meta-Analysis Methods
ALTopt
Optimal Experimental Designs for Accelerated Life Testing
amap
Another Multidimensional Analysis Package
AMAP.Seq
Compare Gene Expressions from 2-Treatment RNA-Seq Experiments
ambur
Analyzing Moving Boundaries Using R
amburhva
AMBUR-HVA
AMCP
A Multiple Comparison Perspective
ameco
European Commission Annual Macro-Economic (AMECO) Database
amei
Adaptive Management of Epidemiological Interventions
Amelia
A Program for Missing Data
amen
Additive and Multiplicative Effects Models for Networks and Relational Data
AmericanCallOpt
This package includes pricing function for selected American call options with underlying assets that generate payouts.
AMGET
Post-processing tool for ADAPT 5
aml
Adaptive Mixed LASSO
AMModels
Adaptive Management Model Manager
AmmoniaConcentration
Un-Ionized Ammonia Concentration
AMOEBA
A Multidirectional Optimum Ecotope-Based Algorithm
AMORE
A MORE flexible neural network package
AmostraBrasil
Generates Samples or Complete List of Brazilian IBGE (Instituto Brasileiro De Geografia e Estatistica) Census Households, Geocoding it by Google Maps
AMOUNTAIN
Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach
ampd
An Algorithm for Automatic Peak Detection in Noisy Periodic and Quasi- Periodic Signals
AmpliconDuo
Statistical Analysis of Amplicon Data of the Same Sample to Identify Artefacts
ampliQueso
Analysis of amplicon enrichment panels
AmyloGram
Prediction of Amyloid Proteins
anacor
Simple and Canonical Correspondence Analysis
analogsea
Interface to 'Digital Ocean'
analogue
Analogue and Weighted Averaging Methods for Palaeoecology
analogueExtra
Additional Functions for Use with the Analogue Package
AnalysisPageServer
A framework for sharing interactive data and plots from R through the web.
analyz
Model Layer for Automatic Data Analysis via CSV File Interpretation
AnalyzeFMRI
Functions for analysis of fMRI datasets stored in the ANALYZE or NIFTI format.
AnalyzeTS
Analyze Fuzzy Time Series
anametrix
Bidirectional Connector to Anametrix API
anamiR
An integrated analysis package of miRNA and mRNA expression data
anapuce
Tools for microarray data analysis
Anaquin
Statistical analysis of sequins
AncestryMapper
Assigning Ancestry Based on Population References
anchors
Statistical analysis of surveys with anchoring vignettes
AnDE
An extended Bayesian Learning Technique developed by Dr. Geoff Webb
andrews
Andrews curves
anesrake
ANES Raking Implementation
AneuFinder
Analysis of Copy Number Variation in Single-Cell-Sequencing Data
anfis
Adaptive Neuro Fuzzy Inference System in R
AnglerCreelSurveySimulation
Simulate a Bus Route Creel Survey of Anglers
Animal
Analyze time-coded animal behavior data
animalTrack
Animal track reconstruction for high frequency 2-dimensional (2D) or 3-dimensional (3D) movement data.
animation
A Gallery of Animations in Statistics and Utilities to Create Animations
anim.plots
Simple Animated Plots For R
ANLP
Build Text Prediction Model
ANN
Feedforward Artificial Neural Network optimized by Genetic Algorithm
annaffy
Annotation tools for Affymetrix biological metadata
annmap
Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis.
annotate
Annotation for microarrays
AnnotationDbi
Annotation Database Interface
AnnotationForge
Code for Building Annotation Database Packages
AnnotationFuncs
Annotation translation functions
AnnotationHub
Client to access AnnotationHub resources
AnnotationHubData
Transform public data resources into Bioconductor Data Structures
annotationTools
Annotate microarrays and perform cross-species gene expression analyses using flat file databases.
annotatr
Annotation of Genomic Regions to Genomic Annotations
AnnotLists
AnnotLists: A tool to annotate multiple lists from a specific annotation file.
anoint
Analysis of Interactions
ANOM
Analysis of Means
anominate
alpha-NOMINATE Ideal Point Estimator
anonymizer
Anonymize Data Containing Personally Identifiable Information
anota
ANalysis Of Translational Activity (ANOTA).
ant
Version of ant specific to R
AntAngioCOOL
Anti-Angiogenic Peptide Prediction
AnthropMMD
A GUI for Mean Measures of Divergence
Anthropometry
Statistical Methods for Anthropometric Data
antiProfiles
Implementation of gene expression anti-profiles
antitrust
Tools for Antitrust Practitioners
AntWeb
programmatic interface to the AntWeb
anytime
Anything to 'POSIXct' or 'Date' Converter
aod
Analysis of Overdispersed Data
aods3
Analysis of Overdispersed Data using S3 methods
aoos
Another Object Orientation System
aop
Adverse Outcome Pathway Analysis
aoristic
aoristic analysis with spatial output (kml)
apa
Format Outputs of Statistical Tests According to APA Guidelines
ApacheLogProcessor
Process the Apache Web Server Access Log Files
apaStyle
Generate APA Tables for MS Word
apaTables
Create American Psychological Association (APA) Style Tables
apc
Age-Period-Cohort Analysis
apcluster
Affinity Propagation Clustering
apComplex
Estimate protein complex membership using AP-MS protein data
apdesign
An Implementation of the Additive Polynomial Design Matrix
ape
Analyses of Phylogenetics and Evolution
apex
Phylogenetic Methods for Multiple Gene Data
apicultuR
A wrapper to the apicultuR set of APIs for NLP in Spanish
aplore3
Datasets from Hosmer, Lemeshow and Sturdivant, "Applied Logistic Regression" (3rd Ed., 2013)
aplpack
Another Plot PACKage: stem.leaf, bagplot, faces, spin3R, plotsummary, plothulls, and some slider functions
apmsWAPP
Pre- and Postprocessing for AP-MS data analysis based on spectral counts
appell
Compute Appell's F1 hypergeometric function
apple
Approximate Path for Penalized Likelihood Estimators
AppliedPredictiveModeling
Functions and Data Sets for 'Applied Predictive Modeling'
AppliedPredictiveModeling
Functions and Data Sets for 'Applied Predictive Modeling'
appnn
Amyloid Propensity Prediction Neural Network
approximator
Bayesian prediction of complex computer codes
APR
Applied Psychometrics With R
aprean3
Datasets from Draper and Smith "Applied Regression Analysis" (3rd Ed., 1998)
apricom
Tools for the a Priori Comparison of Regression Modelling Strategies
aprof
Amdahl's Profiler, Directed Optimization Made Easy
APSIM
General Utility Functions for the 'Agricultural Production Systems Simulator'
APSIMBatch
Analysis the output of Apsim software
apsimr
Edit, Run and Evaluate APSIM Simulations Easily Using R
apsrtable
apsrtable model-output formatter for social science
apt
Asymmetric Price Transmission
APtools
Average Positive Predictive Values (AP) for Binary Outcomes and Censored Event Times
apTreeshape
Analyses of Phylogenetic Treeshape
aqfig
Functions to help display air quality model output and monitoring data
aqp
Algorithms for Quantitative Pedology
aqp
Algorithms for Quantitative Pedology
aqr
Interface methods to use with an ActiveQuant Master Server
aqr
Interface methods to use with an ActiveQuant Master Server
AquaEnv
Integrated Development Toolbox for Aquatic Chemical Model Generation
AquaEnv
Integrated Development Toolbox for Aquatic Chemical Model Generation
AR1seg
Segmentation of an autoregressive Gaussian process of order 1
arabicStemR
Arabic Stemmer for Text Analysis
ArArRedux
Rigorous Data Reduction and Error Propagation of Ar40 / Ar39 Data
arc
Association Rule Classification
ARCensReg
Fitting Univariate Censored Linear Regression Model with Autoregressive Errors
archdata
Example Datasets from Archaeological Research
archetypes
Archetypal Analysis
archetypes
Archetypal Analysis
archiDART
Plant Root System Architecture Analysis Using DART and RSML Files
archivist
Tools for Storing, Restoring and Searching for R Objects
archivist.github
Tools for Archiving, Managing and Sharing R Objects via GitHub
ArDec
Time series autoregressive-based decomposition
arf3DS4
Activated Region Fitting, fMRI data analysis (3D).
arf3DS4
Activated Region Fitting, fMRI data analysis (3D).
arfima
Fractional ARIMA (and Other Long Memory) Time Series Modeling
ArfimaMLM
Arfima-MLM Estimation For Repeated Cross-Sectional Data
arfS4
Activated Region Fitting, fMRI data analysis.
argosfilter
Argos locations filter
argparse
Command Line Optional and Positional Argument Parser
argparser
Command-Line Argument Parser
ArgumentCheck
Improved Communication to Users with Respect to Problems in Function Arguments
arm
Data Analysis Using Regression and Multilevel/Hierarchical Models
arm
Data Analysis Using Regression and Multilevel/Hierarchical Models
arnie
"Arnie" box office records 1982-2014
aroma.affymetrix
Analysis of Large Affymetrix Microarray Data Sets
aroma.apd
A Probe-Level Data File Format Used by 'aroma.affymetrix' [deprecated]
aroma.apd
A probe-level data file format used by aroma.affymetrix [DEPRECATED]
aroma.cn
Copy-Number Analysis of Large Microarray Data Sets
aroma.core
Core Methods and Classes Used by 'aroma.*' Packages Part of the Aroma Framework
aroma.light
Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types
aroma.tcga
Methods for accessing online The Cancer Genome Atlas (TCGA) data
ARPobservation
Tools for Simulating Direct Behavioral Observation Recording Procedures Based on Alternating Renewal Processes
aRpsDCA
Arps Decline Curve Analysis in R
arrApply
Apply a Function to a Margin of an Array
array
Array factor for 2D periodic arrays
ArrayBin
Binarization of numeric data arrays
ArrayExpress
Access the ArrayExpress Microarray Database at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
ArrayExpressHTS
ArrayExpress High Throughput Sequencing Processing Pipeline
arrayhelpers
Convenience Functions for Arrays
arrayhelpers
Convenience Functions for Arrays
arrayMvout
multivariate outlier detection for expression array QA
arrayQuality
Assessing array quality on spotted arrays
arrayQualityMetrics
Quality metrics report for microarray data sets
ArrayTools
geneChip Analysis Package
ArrayTV
Implementation of wave correction for arrays
ARRmNormalization
Adaptive Robust Regression normalization for Illumina methylation data
ars
Adaptive Rejection Sampling
ART
Aligned Rank Transform for Nonparametric Factorial Analysis
artfima
ARTFIMA Model Estimation
ARTIVA
Time-Varying DBN Inference with the ARTIVA (Auto Regressive TIme VArying) Model
ARTool
Aligned Rank Transform
ARTP
Gene and Pathway p-values computed using the Adaptive Rank Truncated Product
ARTP2
Pathway and Gene-Level Association Test
arules
Mining Association Rules and Frequent Itemsets
arulesCBA
Classification Based on Association Rules
arulesNBMiner
Mining NB-Frequent Itemsets and NB-Precise Rules
arulesNBMiner
Mining NB-Frequent Itemsets and NB-Precise Rules
arulesSequences
Mining Frequent Sequences
arulesViz
Visualizing Association Rules and Frequent Itemsets
arulesViz
Visualizing Association Rules and Frequent Itemsets
arulesVizOld
arulesViz - Visualizing Association Rules and Frequent Itemsets
aRxiv
Interface to the arXiv API
ASAFE
Ancestry Specific Allele Frequency Estimation
ASAtable
Model-output formatter for sociological research.
asaur
Data Sets for "Applied Survival Analysis Using R""
asbio
A Collection of Statistical Tools for Biologists
ascii
Export R objects to several markup languages
as.color
Assign Random Colors to Unique Items in a Vector
asd
Simulations for Adaptive Seamless Designs
asdreader
Reading ASD Binary Files in R
ASEB
Predict Acetylated Lysine Sites
ASGSCA
Association Studies for multiple SNPs and multiple traits using Generalized Structured Equation Models
ash
David Scott's ASH Routines
asht
Applied Statistical Hypothesis Tests
AsioHeaders
'Asio' C++ Header Files
aslib
Interface to the Algorithm Selection Benchmark Library
ASMap
Linkage Map Construction using the MSTmap Algorithm
asmn
All sample mean normalization.
asnipe
Animal Social Network Inference and Permutations for Ecologists
aspace
A collection of functions for estimating centrographic statistics and computational geometries for spatial point patterns
ASPBay
Bayesian Inference on Causal Genetic Variants using Affected Sib-Pairs Data
aspect
A General Framework for Multivariate Analysis with Optimal Scaling
aspect
A General Framework for Multivariate Analysis with Optimal Scaling
aspi
Analysis of Symmetry of Parasitic Infections
ASpli
Analysis of alternative splicing using RNA-Seq
aSPU
Adaptive Sum of Powered Score Test
asremlPlus
Augments the Use of 'ASReml-R' in Fitting Mixed Models
assertive
Readable Check Functions to Ensure Code Integrity
assertive.base
A Lightweight Core of the 'assertive' Package
assertive.code
Assertions to Check Properties of Code
assertive.data
Assertions to Check Properties of Data
assertive.data.uk
Assertions to Check Properties of Strings
assertive.data.us
Assertions to Check Properties of Strings
assertive.datetimes
Assertions to Check Properties of Dates and Times
assertive.files
Assertions to Check Properties of Files
assertive.matrices
Assertions to Check Properties of Matrices
assertive.models
Assertions to Check Properties of Models
assertive.numbers
Assertions to Check Properties of Numbers
assertive.properties
Assertions to Check Properties of Variables
assertive.reflection
Assertions for Checking the State of R
assertive.sets
Assertions to Check Properties of Sets
assertive.strings
Assertions to Check Properties of Strings
assertive.types
Assertions to Check Types of Variables
assertr
Assertive Programming for R Analysis Pipelines
assertthat
Easy pre and post assertions.
ASSET
An R package for subset-based association analysis of heterogeneous traits and subtypes
ASSET
An R package for subset-based association analysis of heterogeneous traits and subtypes
AssetPricing
Optimal pricing of assets with fixed expiry date.
ASSIGN
Adaptive Signature Selection and InteGratioN (ASSIGN)
assist
A Suite of R Functions Implementing Spline Smoothing Techniques
ASSISTant
Adaptive Subgroup Selection in Group Sequential Trials
AssocTests
Genetic Association Studies
assortnet
Calculate the Assortativity Coefficient of Weighted and Binary Networks
AssotesteR
Statistical Tests for Genetic Association Studies
aster
Aster Models
aster2
Aster Models
astro
Astronomy Functions, Tools and Routines
astrochron
A Computational Tool for Astrochronology
astrodatR
Astronomical Data
astroFns
Astronomy: time and position functions, misc. utilities
astrolibR
Astronomy Users Library
astsa
Applied Statistical Time Series Analysis
asuR
Advanced statistics using R
asVPC
Average Shifted Visual Predictive Checks
asymLD
Asymmetric Linkage Disequilibrium (ALD) for Polymorphic Genetic Data
asymmetry
Visualizing Asymmetric Data
asympTest
Asymptotic statistic
AsynchLong
Regression Analysis of Sparse Asynchronous Longitudinal Data
asypow
Calculate Power Utilizing Asymptotic Likelihood Ratio Methods
ATE
Inference for Average Treatment Effects using Covariate Balancing
AtelieR
A GTK GUI for teaching basic concepts in statistical inference, and doing elementary bayesian tests.
AtelieR
A GTK GUI for teaching basic concepts in statistical inference, and doing elementary bayesian tests.
AtlasRDF
Gene Expression Atlas query and gene set enrichment package.
atmcmc
Automatically Tuned Markov Chain Monte Carlo
ATmet
Advanced Tools for Metrology
atmosphere
weather and climate analysis
AtmRay
Acoustic Traveltime Calculations for 1-D Atmospheric Models
Atools
Atools
aTSA
Alternative Time Series Analysis
atsd
Support Querying Axibase Time-Series Database
attract
Methods to Find the Gene Expression Modules that Represent the Drivers of Kauffman's Attractor Landscape
attribrisk
Population Attributable Risk
AUC
Threshold independent performance measures for probabilistic classifiers.
aucm
AUC Maximization
AUCRF
Variable Selection with Random Forest and the Area Under the Curve
audio
Audio Interface for R
audiolyzR
audiolyzR: Give your data a listen
audit
Bounds for Accounting Populations
audited
Automatic Tracing and Display of Changes to Row Count
aurelhy
Hydrometeorological interpolation
auRoc
Various Methods to Estimate the AUC
austin
A package for doing things with words
AUtests
Approximate Unconditional and Permutation Tests
autocorr
Testing Autocorrelation through bootstrap and surrogate methods
AutoDeskR
An Interface to the 'AutoDesk' 'API'
autoencoder
Sparse Autoencoder for Automatic Learning of Representative Features from Unlabeled Data
autoimage
Display Multiple Images with Scaled Colors
automap
Automatic interpolation package
AutoModel
Automated Hierarchical Multiple Regression with Assumptions Checking
automultinomial
Autologistic and Automultinomial Spatial Regression and Variable Selection
autopls
Partial Least Squares Regression with Backward Selection of Predictors
AutoregressionMDE
Minimum Distance Estimation in Autoregressive Model
AutoSEARCH
General-to-Specific (GETS) Modelling
autoSEM
Performs Specification Search in Structural Equation Models
autovarCore
Automated Vector Autoregression Models and Networks
averisk
Calculation of Average Population Attributable Fractions and Confidence Intervals
aVirtualTwins
Adaptation of Virtual Twins Method from Jared Foster
aws
Adaptive Weights Smoothing
aws.alexa
Client for the Amazon Alexa Web Information Services API
awsMethods
Class and Methods Definitions for Packages 'aws', 'adimpro', 'fmri', 'dwi'
aws.signature
Amazon Web Services Request Signatures
aylmer
A generalization of Fisher's exact test
AzureML
Interface with Azure Machine Learning Datasets, Experiments and Web Services
B2Z
Bayesian Two-Zone Model
b6e6rl
Adaptive differential evolution, b6e6rl variant
BaalChIP
BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes
babar
Bayesian Bacterial Growth Curve Analysis in R
babel
Ribosome Profiling Data Analysis
BaBooN
Bayesian Bootstrap Predictive Mean Matching - Multiple and Single Imputation for Discrete Data
babynames
US Baby Names 1880-2014
BAC
Bayesian Analysis of Chip-chip experiment
BACA
Bubble Chart to Compare Biological Annotations by using DAVID
BacArena
Modeling Framework for Cellular Communities in their Environments
BACCO
Bayesian Analysis of Computer Code Output (BACCO)
BACCT
Bayesian Augmented Control for Clinical Trials
backblazer
Bindings to the Backblaze B2 API
background
This packages allow users to ``background'' computations.
backpipe
Backward Pipe Operator
backports
Reimplementations of Functions Introduced Since R-3.0.0
backShift
Learning Causal Cyclic Graphs from Unknown Shift Interventions
backtest
Exploring Portfolio-Based Conjectures About Financial Instruments
backtestGraphics
Interactive Graphics for Portfolio Data
bacon
Controlling bias and inflation in association studies using the empirical null distribution
BACprior
Choice of the Hyperparameter Omega in the Bayesian Adjustment for Confounding (BAC) Algorithm
bacr
Bayesian Adjustment for Confounding
BADER
Bayesian Analysis of Differential Expression in RNA Sequencing Data
badgecreatr
Create Badges for 'Travis', 'Repostatus' 'Codecov.io' Etc in Github Readme
BADGER
A package for identifying sample mixups in combined expression and genotyping studies.
BadRegionFinder
BadRegionFinder: an R/Bioconductor package for identifying regions with bad coverage
BAEssd
Bayesian Average Error approach to Sample Size Determination
Bagidis
BAses GIving DIStances
bagRboostR
Ensemble bagging and boosting classifiers
BAGS
A Bayesian Approach for Geneset Selection
BalanceCheck
Balance Check for Multiple Covariates in Matched Observational Studies
BalancedSampling
Balanced and Spatially Balanced Sampling
ballgown
Flexible, isoform-level differential expression analysis
BaM
Functions and Datasets for Books by Jeff Gill
bamdit
Bayesian Meta-Analysis of Diagnostic Test Data
bamlss
Bayesian Additive Models for Location Scale and Shape (and Beyond)
BAMMtools
Analysis and Visualization of Macroevolutionary Dynamics on Phylogenetic Trees
bamsignals
Extract read count signals from bam files
bandit
Functions for simple A/B split test and multi-armed bandit analysis
BANFF
Bayesian Network Feature Finder
bannerCommenter
Make Banner Comments with a Consistent Format
BANOVA
Hierarchical Bayesian ANOVA Models
banxicoR
Download Data from the Bank of Mexico
BAPC
Projection of cancer incidence and mortality data using Bayesian APC models fitted with INLA
bapred
Batch Effect Removal and Addon Normalization (in Phenotype Prediction using Gene Data)
BaPreStoPro
Bayesian Prediction of Stochastic Processes
barcode
Barcode distribution plots
barcode
Barcode distribution plots
BarcodingR
Species Identification using DNA Barcodes
barebone
Multivariate Methods in Ecology with R: Basic Algorithms
Barnard
Barnard's Unconditional Test
bartMachine
Bayesian Additive Regression Trees
bartMachineJARs
bartMachine JARs
Barycenter
Wasserstein Barycenter
BAS
Bayesian Model Averaging using Bayesian Adaptive Sampling
base64
Base64 Encoder and Decoder
base64
Base 64 encoder/decoder
base64enc
Tools for base64 encoding
base64url
Fast and URL-Safe Base64 Encoder and Decoder
basefun
Infrastructure for Computing with Basis Functions
basefun
Infrastructure for Computing with Basis Functions
baseline
Baseline Correction of Spectra
BaseSpaceR
R SDK for BaseSpace RESTful API
Basic4Cseq
Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data
basicspace
Recovering a Basic Space from Issue Scales
BasicSTARRseq
Basic peak calling on STARR-seq data
BASIX
BASIX: An efficient C/C++ toolset for R.
BaSTA
Age-Specific Survival Analysis from Incomplete Capture-Recapture/Recovery Data
bastah
Big Data Statistical Analysis for High-Dimensional Models
BAT
Biodiversity Assessment Tools
batade
HTML reports and so on
batch
Batching Routines in Parallel and Passing Command-Line Arguments to R
BatchExperiments
Statistical Experiments on Batch Computing Clusters
BatchGetSymbols
Downloads and Organizes Financial Data for Multiple Tickers
BatchJobs
Batch Computing with R
batchmeans
Consistent Batch Means Estimation of Monte Carlo Standard Errors
BatchQC
Batch Effects Quality Control Software
batchtools
Tools for Computation on Batch Systems
batman
Convert Categorical Representations of Logicals to Actual Logicals
batman
Bayesian AuTomated Metabolite Analyser for NMR spectra
batteryreduction
An R Package for Data Reduction by Battery Reduction
baybi
Bayesian Biclustering with Subject and Variable Importance
BayClone2
Bayesian Feature Allocation Model for Tumor Heterogeneity
bayesAB
Fast Bayesian Methods for AB Testing
BayesBD
Bayesian Inference for Image Boundaries
BayesBinMix
Bayesian Estimation of Mixtures of Multivariate Bernoulli Distributions
bayesbio
Miscellaneous Functions for Bioinformatics and Bayesian Statistics
bayesboot
An Implementation of Rubin's (1981) Bayesian Bootstrap
BayesBridge
Bridge Regression
BayesComm
Bayesian Community Ecology Analysis
bayescount
Power Calculations and Bayesian Analysis of Count Distributions and FECRT Data using MCMC
BayesCR
Bayesian Analysis of Censored Regression Models Under Scale Mixture of Skew Normal Distributions
BayesDA
Functions and Datasets for the book "Bayesian Data Analysis"
bayesDccGarch
The Bayesian Dynamic Conditional Correlation GARCH Model
bayesDem
Graphical User Interface for bayesTFR, bayesLife and bayesPop
bayesdnamix
Procedure for evaluate marginal likelihood for quantitative STR DNA mixture bayesian models
BayesFactor
Computation of Bayes factors for common designs
BayesFactor
Computation of Bayes Factors for Common Designs
BayesFactors.gibi
Compute Bayes factors using the GIBI interface
BayesFM
Bayesian Inference for Factor Modeling
bayesGARCH
Bayesian Estimation of the GARCH(1,1) Model with Student-t Innovations
bayesGDS
Scalable Rejection Sampling for Bayesian Hierarchical Models
BayesGESM
Bayesian Analysis of Generalized Elliptical Semi-Parametric Models and Flexible Measurement Error Models
BayesH
Bayesian Regression Model with Mixture of Two Scaled Inverse Chi Square as Hyperprior
BayesianAnimalTracker
Bayesian Melding of GPS and DR Path for Animal Tracking
Bayesianbetareg
Bayesian Beta regression: joint mean and precision modeling
BayesianNetwork
Bayesian Network Modeling and Analysis
bayesImageS
Bayesian Methods for Image Segmentation using a Potts Model
BayesKnockdown
BayesKnockdown: Posterior Probabilities for Edges from Knockdown Data
BayesLCA
Bayesian Latent Class Analysis
bayesLife
Bayesian Projection of Life Expectancy
BayesLogit
Logistic Regression
bayesm
Bayesian Inference for Marketing/Micro-Econometrics
BayesMAMS
Designing Bayesian Multi-Arm Multi-Stage Studies
bayesMCClust
Mixtures-of-Experts Markov Chain Clustering and Dirichlet Multinomial Clustering
BayesMed
Default Bayesian Hypothesis Tests for Correlation, Partial Correlation, and Mediation
bayesmeta
Bayesian Random-Effects Meta-Analysis
bayesmix
Bayesian Mixture Models with JAGS
BayesMixSurv
Bayesian Mixture Survival Models using Additive Mixture-of-Weibull Hazards, with Lasso Shrinkage and Stratification
BayesNI
BayesNI: Bayesian Testing Procedure for Noninferiority with Binary Endpoints
BayesPeak
Bayesian Analysis of ChIP-seq Data
BayesPiecewiseICAR
Hierarchical Bayesian Model for a Hazard Function
bayesplot
Plotting for Bayesian Models
bayesPop
Probabilistic Population Projection
bayespref
Hierarchical Bayesian analysis of ecological count data
bayesQR
Bayesian quantile regression
BayesR
Bayesian Regression in R
bayesreg
Bayesian Regression Models with Continuous Shrinkage Priors
bayess
Bayesian Essentials with R
BayesSAE
Bayesian Analysis of Small Area Estimation
BayesSingleSub
Computation of Bayes factors for interrupted time-series designs
BayesSingleSub
Computation of Bayes factors for interrupted time-series designs
BayesSummaryStatLM
MCMC Sampling of Bayesian Linear Models via Summary Statistics
bayesSurv
Bayesian Survival Regression with Flexible Error and Random Effects Distributions
bayesTFR
Bayesian Fertility Projection
Bayesthresh
Bayesian thresholds mixed-effects models for categorical data
BayesTree
Bayesian Additive Regression Trees
BayesTreePrior
Bayesian Tree Prior Simulation
BayesValidate
BayesValidate Package
BayesVarSel
Bayes Factors, Model Choice and Variable Selection in Linear Models
BayesX
R Utilities Accompanying the Software Package BayesX
BayesXdev
R Package Distribution of the BayesX C++ Development Sources
BayesXsrc
R Package Distribution of the BayesX C++ Sources
BayHap
Bayesian analysis of haplotype association using Markov Chain Monte Carlo
BayHaz
R Functions for Bayesian Hazard Rate Estimation
BaylorEdPsych
R Package for Baylor University Educational Psychology Quantitative Courses
bayou
Bayesian Fitting of Ornstein-Uhlenbeck Models to Phylogenies
baySeq
Empirical Bayesian analysis of patterns of differential expression in count data
BaySIC
Bayesian Analysis of Significantly Mutated Genes in Cancer
BAYSTAR
On Bayesian analysis of Threshold autoregressive model (BAYSTAR)
BB
Solving and Optimizing Large-Scale Nonlinear Systems
BB
Solving and Optimizing Large-Scale Nonlinear Systems
BBCAnalyzer
BBCAnalyzer: an R/Bioconductor package for visualizing base counts
bbefkr
Bayesian bandwidth estimation and semi-metric selection for the functional kernel regression with unknown error density
bbemkr
Bayesian bandwidth estimation for multivariate kernel regression with Gaussian error
BBEST
Bayesian Estimation of Incoherent Neutron Scattering Backgrounds
BBmisc
Miscellaneous Helper Functions for B. Bischl
bbmle
Tools for General Maximum Likelihood Estimation
bbmle
Tools for general maximum likelihood estimation
BBMM
Brownian bridge movement model
bbo
Biogeography-Based Optimization
BBRecapture
Bayesian Behavioural Capture-Recapture Models
bc3net
Gene Regulatory Network Inference with Bc3net
BCA
Business and Customer Analytics
BCBCSF
Bias-Corrected Bayesian Classification with Selected Features
BCDating
Business Cycle Dating and Plotting Tools
BcDiag
Diagnostics Plots for Bicluster Data
BcDiag
Diagnostics Plots for Bicluster Data
BCE
Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data
BCE
Bayesian composition estimator: estimating sample (taxonomic) composition from biomarker data
BCEA
Bayesian Cost Effectiveness Analysis
BCEE
The Bayesian Causal Effect Estimation Algorithm
BCellMA
B Cell Receptor Somatic Hyper Mutation Analysis
BCEs0
Bayesian Models for Cost-Effectiveness Analysis in the Presence of Structural Zero Costs
Bchron
Radiocarbon Dating, Age-Depth Modelling, Relative Sea Level Rate Estimation, and Non-Parametric Phase Modelling
Bclim
Bayesian Palaeoclimate Reconstruction from Pollen Data
bclust
Bayesian Hierarchical Clustering Using Spike and Slab Models
bclust
Bayesian Hierarchical Clustering Using Spike and Slab Models
bcp
Bayesian Analysis of Change Point Problems
bcpa
Behavioral change point analysis of animal movement
bcpmeta
Bayesian Multiple Changepoint Detection Using Metadata
BCRA
Breast Cancer Risk Assessment
BCRANK
Predicting binding site consensus from ranked DNA sequences
bcRep
Advanced Analysis of B Cell Receptor Repertoire Data
bcrm
Bayesian Continual Reassessment Method for Phase I Dose-Escalation Trials
bcROCsurface
Bias-Corrected Methods for Estimating the ROC Surface of Continuous Diagnostic Tests
bcrypt
'Blowfish' Password Hashing Algorithm
BCSub
A Bayesian Semiparametric Factor Analysis Model for Subtype Identification (Clustering)
bcv
Cross-Validation for the SVD (Bi-Cross-Validation)
bda
Density Estimation for Grouped Data
bde
Bounded Density Estimation
BDgraph
Bayesian Structure Learning in Graphical Models using Birth-Death MCMC
bdlp
A Package for Transparent Artificial Data Generation
bdots
Bootstrapped Differences of Time Series
bdpopt
Optimisation of Bayesian Decision Problems
bdpv
Inference and design for predictive values in binary diagnostic tests
BDR
Big Data Ready
bdrift
Beta Drift Analysis
bdscale
Remove Weekends and Holidays from ggplot2 Axes
bdsmatrix
Routines for Block Diagonal Symmetric matrices
bdsmatrix
Routines for Block Diagonal Symmetric matrices
bdvis
Biodiversity Data Visualizations
BDWreg
Bayesian Inference for Discrete Weibull Regression
bdynsys
Bayesian Dynamical System Model
BEACH
Biometric Exploratory Analysis Creation House
beadarray
Quality assessment and low-level analysis for Illumina BeadArray data
beadarrayFilter
Bead filtering for Illumina bead arrays
beadarrayMSV
Analysis of Illumina BeadArray SNP data including MSV markers
beadarraySNP
Normalization and reporting of Illumina SNP bead arrays
BeadDataPackR
Compression of Illumina BeadArray data
beanplot
Visualization via Beanplots (like Boxplot/Stripchart/Violin Plot)
BEANSP
Bayesian Estimate of Age-specific Nest Survival Probabilities
beanz
Bayesian Analysis of Heterogeneous Treatment Effect
bea.R
Bureau of Economic Analysis API
BEAT
BEAT - BS-Seq Epimutation Analysis Toolkit
BEclear
Correct for batch effects in DNA methylation data
BEDASSLE
Quantifies effects of geo/eco distance on genetic differentiation
BEDMatrix
Matrices Backed by Binary PED Files (PLINK)
bedr
Genomic Region Processing using Tools Such as BEDtools, BEDOPS and Tabix
beepr
Easily Play Notification Sounds on any Platform
beeswarm
The Bee Swarm Plot, an Alternative to Stripchart
belex
Download Historical Data from the Belgrade Stock Exchange
benchden
28 benchmark densities from Berlinet/Devroye (1994)
benchmark
Benchmark Experiments Toolbox
Benchmarking
Benchmark and Frontier Analysis Using DEA and SFA
benchmarkme
Crowd Sourced System Benchmarks
benchmarkmeData
Data Set for the 'benchmarkme' Package
benchr
High Precise Measurement of R Expressions Execution Time
benford.analysis
Benford Analysis for Data Validation and Forensic Analytics
BenfordTests
Statistical Tests for Evaluating Conformity to Benford's Law
bentcableAR
Bent-Cable Regression for Independent Data or Autoregressive Time Series
BEQI2
Benthic Ecosystem Quality Index 2
ber
Batch Effects Removal
Bergm
Bayesian analysis for exponential random graph models
berryFunctions
Function Collection Related to Plotting and Hydrology
bertin
Bertin matrix display
Bessel
Bessel Functions Computations and Approximations
Bessel
Bessel -- Bessel Functions Computations and Approximations
BEST
Bayesian Estimation Supersedes the t-Test
bestglm
Best Subset GLM
BetaBit
Mini Games from Adventures of Beta and Bit
betafam
Detecting rare variants for quantitative traits using nuclear families
betalink
Beta-Diversity of Species Interactions
betapart
Partitioning Beta Diversity into Turnover and Nestedness Components
betapart
Partitioning beta diversity into turnover and nestedness components
betaper
Functions to incorporate taxonomic uncertainty on multivariate analyses of ecological data
betareg
Beta Regression
betareg
Beta Regression
betas
Standardized Beta Coefficients
betategarch
Simulation, Estimation and Forecasting of Beta-Skew-t-EGARCH Models
bethel
Bethel's algorithm.
betr
Identify differentially expressed genes in microarray time-course data
BeviMed
Bayesian Evaluation of Variant Involvement in Mendelian Disorders
bezier
Bezier Curve and Spline Toolkit
bfa
Bayesian Factor Analysis
bfa
Bayesian Factor Analysis
bfast
Breaks For Additive Season and Trend (BFAST)
bfast
Breaks For Additive Season and Trend
bfork
Basic Unix Process Control
bfp
Bayesian Fractional Polynomials
bfp
Bayesian Fractional Polynomials
bgafun
BGAfun A method to identify specifity determining residues in protein families
BgeeDB
Annotation and gene expression data retrieval from Bgee database
bgeva
Binary Generalized Extreme Value Additive Models
bglm
Bayesian Estimation in Generalized Linear Models
BGLR
Bayesian Generalized Linear Regression
BGLR
Bayesian Generalized Linear Regression
BGLRutils
Utilities for Bayesian Generalized Linear Regression
bgmfiles
Example BGM Files for the Atlantis Ecosystem Model
BGmix
Bayesian models for differential gene expression
bgmm
Gaussian Mixture Modeling Algorithms And The Belief-based Mixture Modeling
BGPhazard
Markov Beta and Gamma Processes for Modeling Hazard Rates
BGSIMD
Block Gibbs Sampler with Incomplete Multinomial Distribution
bgsmtr
Bayesian Group Sparse Multi-Task Regression
bgx
Bayesian Gene eXpression
BH
Boost C++ Header Files
BH
The Boost C++ Libraries
Bhat
General likelihood exploration
BHC
Bayesian Hierarchical Clustering
BHH2
Useful Functions for Box, Hunter and Hunter II
bhm
Biomarker Threshold Models
biasbetareg
Bias correction of the parameter estimates of the beta regression model
BiasedUrn
Biased Urn Model Distributions
bib2df
Parse a BibTeX File to a Tibble
BiBitR
R Wrapper for Java Implementation of BiBit
bibliometrix
Bibliometric and Co-Citation Analysis Tool
bibliospec
Reading Mass Spectrometric Search Results
bibtex
bibtex parser
bibtex
bibtex parser
BicARE
Biclustering Analysis and Results Exploration
biclust
BiCluster Algorithms
biclust
BiCluster Algorithms
biclustRank
Ranking of biclusters using another data source
BiDimRegression
Calculates the bidimensional regression between two 2D configurations
bifactorial
Inferences for bi- and trifactorial trial designs
bife
Binary Choice Models with Fixed Effects
BIFIEsurvey
Tools for Survey Statistics in Educational Assessment
bigalgebra
BLAS routines for native R matrices and big.matrix objects.
bigalgebra
BLAS routines for native R matrices and big.matrix objects.
biganalytics
A library of utilities for big.matrix objects of package bigmemory.
biganalytics
Utilities for 'big.matrix' Objects from Package 'bigmemory'
bigdata
Big Data Analytics
BIGDAWG
Case-Control Analysis of Multi-Allelic Loci
bigFastlm
Fast Linear Models for Objects from the 'bigmemory' Package
bigGP
Distributed Gaussian Process Calculations
BiGGR
Constraint based modeling in R using metabolic reconstruction databases
biglars
Scalable Least-Angle Regression and Lasso
biglasso
Big Lasso: Extending Lasso Model Fitting to Big Data in R
biglm
bounded memory linear and generalized linear models
biglme
Procedure for doing inference of one-way Linear Mixed Effects models.
bigmelon
Illumina methylation array analysis for large experiments
bigmemory
Manage massive matrices with shared memory and memory-mapped files
bigmemory
Manage Massive Matrices with Shared Memory and Memory-Mapped Files
bigmemoryExtras
An extension of the bigmemory package with added safety, convenience, and a factor class
bigmemory.sri
A shared resource interface for Bigmemory Project packages
bigmemory.sri
A shared resource interface for Bigmemory Project packages
bigml
Bindings for the BigML API
bigmlogit
Estimation of models with limited dependent variables
bigpca
PCA, Transpose and Multicore Functionality for 'big.matrix' Objects
bigQueryR
Interface with Google BigQuery with Shiny Compatibility
BigQuic
Big Quadratic Inverse Covariance Estimation
bigReg
Generalized Linear Models (GLM) for Large Data Sets
bigrquery
An Interface to Google's 'BigQuery' 'API'
bigRR
Generalized Ridge Regression (with special advantage for p >> n cases)
bigRR
Generalized Ridge Regression (with special advantage for p >> n cases)
BigSEM
Constructing Large Systems of Structural Equations
bigsplines
Smoothing Splines for Large Samples
bigstep
Stepwise Selection for Large Data Sets
bigtabulate
Table, Apply, and Split Functionality for Matrix and 'big.matrix' Objects
bigtcr
Nonparametric Analysis of Bivariate Gap Time with Competing Risks
BigTSP
Top Scoring Pair based methods for classification
BigVAR
Dimension Reduction Methods for Multivariate Time Series
bikeshare14
Bay Area Bike Share Trips in 2014
bild
BInary Longitudinal Data
bimetallic
Power for SNP analyses using silver standard cases
bimixt
Estimates Mixture Models for Case-Control Data
BimodalIndex
The Bimodality Index
Binarize
Binarization of One-Dimensional Data
BinaryEMVS
Variable Selection for Binary Data Using the EM Algorithm
BinaryEPPM
Mean and Variance Modeling of Binary Data
binaryLogic
Binary Logic
binda
Multi-Class Discriminant Analysis using Binary Predictors
bindata
Generation of Artificial Binary Data
bindr
Parametrized Active Bindings
binequality
Methods for Analyzing Binned Income Data
binford
Binford's Hunter-Gatherer Data
bingat
Binary Graph Analysis Tools
binGroup
Evaluation and experimental design for binomial group testing
binhf
Haar-Fisz functions for binomial data
binMto
Asymptotic simultaneous confidence intervals for many-to-one comparisons of proportions
BinNonNor
Data Generation with Binary and Continuous Non-Normal Components
BinNor
Simultaneous Generation of Multivariate Binary and Normal Variates
binom
Binomial Confidence Intervals For Several Parameterizations
binom
Binomial Confidence Intervals For Several Parameterizations
binomen
'Taxonomic' Specification and Parsing Methods
binomialcftp
Generates binomial random numbers via the coupling from the past algorithm
binomlogit
Efficient MCMC for Binomial Logit Models
binomSamSize
Confidence Intervals and Sample Size Determination for a Binomial Proportion under Simple Random Sampling and Pooled Sampling
binomTools
Performing diagnostics on binomial regression models
binomTools
Performing diagnostics on binomial regression models
BinOrdNonNor
Concurrent Generation of Binary, Ordinal and Continuous Data
binr
Cut Numeric Values into Evenly Distributed Groups
binseqtest
Exact Binary Sequential Designs and Analysis
binsmooth
Generate PDFs and CDFs from Binned Data
binst
Data Preprocessing, Binning for Classification and Regression
bio3d
Biological Structure Analysis
bioassayR
Cross-target analysis of small molecule bioactivity
Biobase
Biobase: Base functions for Bioconductor
biobroom
Turn Bioconductor objects into tidy data frames
BioCalc
Bioclim Variables Calculator
bioCancer
Interactive Multi-Omics Cancers Data Visualization and Analysis
BiocCaseStudies
BiocCaseStudies: Support for the Case Studies Monograph
BiocCheck
Bioconductor-specific package checks
BiocGenerics
S4 generic functions for Bioconductor
biocGraph
Graph examples and use cases in Bioinformatics
BiocInstaller
Install/Update Bioconductor, CRAN, and github Packages
Biocomb
Feature Selection and Classification with the Embedded Validation Procedures for Biomedical Data Analysis
BiocParallel
Bioconductor facilities for parallel evaluation
BioCro
Simulation of Biomass Crops
BiocStyle
Standard styles for vignettes and other Bioconductor documents
biocViews
Categorized views of R package repositories
BiocWorkflowTools
Tools to aid the development of Bioconductor Workflow packages
Biodem
Biodemography Functions
bioDist
Different distance measures
BiodiversityR
Package for Community Ecology and Suitability Analysis
BIOdry
Multilevel Modeling of Dendroclimatical Fluctuations
BioFTF
Biodiversity Assessment Using Functional Tools
biogas
Process Biogas Data and Predict Biogas Production
biogeo
Point Data Quality Assessment and Coordinate Conversion
BioGeoBEARS
BioGeography with Bayesian (and Likelihood) Evolutionary Analysis in R Scripts
biogram
N-Gram Analysis of Biological Sequences
Biograph
Explore Life Histories
bioimagetools
Some Tools for Imaging
bioinactivation
Simulation of Dynamic Microbial Inactivation
bio.infer
Predict environmental conditions from biological observations
biom
An interface package (beta) for the BIOM file format.
BioMark
Find Biomarkers in Two-Class Discrimination Problems
biomaRt
Interface to BioMart databases (e.g. Ensembl, COSMIC, Wormbase and Gramene)
biomartr
Genomic Data Retrieval with R
BIOMASS
Estimating Above-Ground Biomass and Its Uncertainty in Tropical Forests
biomformat
An interface package for the BIOM file format
BIOMOD
Ensemble platform for species distribution modeling
biomod2
Ensemble Platform for Species Distribution Modeling
biomod2
Ensemble Platform for Species Distribution Modeling
BIOM.utils
Utilities for the BIOM (Biological Observation Matrix) Format
BioMVCClass
Model-View-Controller (MVC) Classes That Use Biobase
biomvRCNS
Copy Number study and Segmentation for multivariate biological data
BioNet
Routines for the functional analysis of biological networks
bionetdata
Biological and chemical data networks
BioPET
Biomarker Prognostic Enrichment Tool
BioPhysConnectoR
BioPhysConnectoR
bioplots
Visualization of Overlapping Results with Heatmap
bioPN
Simulation of deterministic and stochastic biochemical reaction networks using Petri Nets
BioQC
Detect tissue heterogeneity in expression profiles with gene sets
biorxivr
Search and Download Papers from the bioRxiv Preprint Server
bios2mds
From BIOlogical Sequences to MultiDimensional Scaling
BioSeqClass
Classification for Biological Sequences
biosignalEMG
Tools for Electromyogram Signals (EMG) Analysis
biosigner
Signature discovery from omics data
BioStatR
Initiation à la Statistique avec R
biostatUZH
Misc Tools of the Department of Biostatistics, EBPI, University of Zurich
Biostrings
String objects representing biological sequences, and matching algorithms
biosvd
Package for high-throughput data processing, outlier detection, noise removal and dynamic modeling
biotic
Calculation of Freshwater Biotic Indices
biotools
Tools for Biometry and Applied Statistics in Agricultural Science
biovizBase
Basic graphic utilities for visualization of genomic data.
bipartite
Visualising Bipartite Networks and Calculating Some (Ecological) Indices
biplotbootGUI
Bootstrap on Classical Biplots and Clustering Disjoint Biplot
BiplotGUI
Interactive Biplots in R
BiplotGUI
Interactive Biplots in R
BIPOD
BIPOD (Bayesian Inference for Partially Observed diffusions)
birdnik
Connector for the Wordnik API
birdring
Methods to Analyse Ring Re-Encounter Data
BiRewire
High-performing routines for the randomization of a bipartite graph (or a binary event matrix), undirected and directed signed graph preserving degree distribution (or marginal totals)
birk
MA Birk's Functions
birta
Bayesian Inference of Regulation of Transcriptional Activity
birte
Bayesian Inference of Regulatory Influence on Expression (biRte)
bisectr
Tools to find bad commits with git bisect
BiSEp
Toolkit to Identify Candidate Synthetic Lethality
BiSeq
Processing and analyzing bisulfite sequencing data
bisoreg
Bayesian Isotonic Regression with Bernstein Polynomials
bit
A class for vectors of 1-bit booleans
bit
A Class for Vectors of 1-Bit Booleans
bit64
A S3 Class for Vectors of 64bit Integers
bit64
A S3 Class for Vectors of 64bit Integers
bitops
Bitwise Operations
BiTrinA
Binarization and Trinarization of One-Dimensional Data
bitrugs
Bayesian Inference of Transmission Routes Using Genome Sequences
BitSeq
Transcript expression inference and differential expression analysis for RNA-seq data
biVar
Bias-Variance Analysis of the Misclassification Rate
BivarP
Estimating the Parameters of Some Bivariate Distributions
bivarRIpower
Sample size calculations for bivariate longitudinal data
BivUnifBin
Generation of Bivariate Uniform Data and Its Relation to Bivariate Binary Data
biwavelet
Conduct Univariate and Bivariate Wavelet Analyses
biwavelet
Conduct univariate and bivariate wavelet analyses
biwt
Functions to compute the biweight mean vector and covariance & correlation matrices
bizdays
Business Days Calculations and Utilities
bkmr
Bayesian Kernel Machine Regression
BKPC
Bayesian Kernel Projection Classifier
blackbox
Black Box Optimization and Exploration of Parameter Space
BlakerCI
Blaker's Binomial Confidence Limits
BlandAltmanLeh
Plots (Slightly Extended) Bland-Altman Plots
blatr
Send Emails Using 'Blat' for Windows
Blaunet
Calculate and Analyze Blau Status for Measuring Social Distance
blavaan
Bayesian Latent Variable Analysis
BLCOP
Black-Litterman and Copula Opinion Pooling Frameworks
BLCOP
Black-Litterman and copula-opinion pooling frameworks
blendedLink
A New Link Function that Blends Two Specified Link Functions
blender
Analyze biotic homogenization of landscapes
blighty
United Kingdom coastlines
blima
Package for the preprocessing and analysis of the Illumina microarrays on the detector (bead) level.
blkbox
Data Exploration with Multiple Machine Learning Algorithms
blkergm
Fitting block ERGM given the block structure on social networks
blm
Binomial linear and linear-expit regression
blme
Bayesian Linear Mixed-Effects Models
blmeco
Data Files and Functions Accompanying the Book "Bayesian Data Analysis in Ecology using R, BUGS and Stan"
blmr
Broken Line Model Regression
blockcluster
Coclustering Package for Binary, Categorical, Contingency and Continuous Data-Sets
blockDemac
parallel DEMC with several parameter blocks
blockmatrix
blockmatrix: Tools to solve algebraic systems with partitioned matrices
BlockMessage
Creates strings that show a text message in 8 by 8 block letters
blockmodeling
An R package for Generalized and classical blockmodeling of valued networks
blockmodeling
An R package for generalized and classical blockmodeling of valued networks
blockmodels
Latent and Stochastic Block Model Estimation by a 'V-EM' Algorithm
blockra
Block Rearrangement Algorithm
blockrand
Randomization for block random clinical trials
blockrand
Randomization for block random clinical trials
blocksdesign
Nested and Crossed Block Designs for Unstructured Treatment Sets
blockseg
Two Dimensional Change-Points Detection
blockTools
Block, Assign, and Diagnose Potential Interference in Randomized Experiments
Blossom
Statistical Comparisons with Distance-Function Based Permutation Tests
blotter
Tools for Transaction-Oriented Trading Systems Development
BLR
Bayesian Linear Regression
BLR
Bayesian Linear Regression
blsAPI
Request Data from the U.S. Bureau of Labor Statistics API
blscrapeR
An API Wrapper for the Bureau of Labor Statistics (BLS)
blupsurv
Recurrent events with BLUPs
BMA
Bayesian Model Averaging
bmd
Benchmark dose analysis for dose-response data
bmem
Mediation analysis with missing data using bootstrap
bmem
Mediation analysis with missing data using bootstrap
bmeta
Bayesian Meta-Analysis and Meta-Regression
BMhyd
PCM for Hybridization
Bmix
Bayesian Sampling for Stick-Breaking Mixtures
bmk
MCMC diagnostics package
bmlm
Bayesian Multilevel Mediation
bmmix
Bayesian multinomial mixture
BMN
The pseudo-likelihood method for pairwise binary markov networks
bmp
Read Windows Bitmap (BMP) images
bmrm
Bundle Methods for Regularized Risk Minimization Package
BMRV
Bayesian Models for Rare Variant Association Analysis
BMRV
Bayesian Models for Rare Variant Association Analysis
BMS
Bayesian Model Averaging Library
BNDataGenerator
Data Generator based on Bayesian Network Model
bnlearn
Bayesian Network Structure Learning, Parameter Learning and Inference
bnnSurvival
Bagged k-Nearest Neighbors Survival Prediction
bnormnlr
Bayesian Estimation for Normal Heteroscedastic Nonlinear Regression Models
BNPdensity
Ferguson-Klass Type Algorithm for Posterior Normalized Random Measures
BNPMIXcluster
Bayesian Nonparametric Model for Clustering with Mixed Scale Variables
bnpmr
Bayesian monotonic nonparametric regression
BNPTSclust
A Bayesian Nonparametric Algorithm for Time Series Clustering
BNSP
Bayesian Non- and Semi-Parametric Model Fitting
bnspatial
Spatial Implementation of Bayesian Networks and Mapping
bnstruct
Bayesian Network Structure Learning from Data with Missing Values
boa
Bayesian Output Analysis Program (BOA) for MCMC
BoardGames
Board Games and Tools for Building Board Games
bodenmiller
Profilling of Peripheral Blood Mononuclear Cells using CyTOF
BOG
Bacterium and Virus Analysis of Orthologous Groups (BOG) is a Package for Identifying Differentially Regulated Genes in the Light of Gene Functions
boilerpipeR
Interface to the boilerpipe Java library by Christian Kohlschutter (http://code.google.com/p/boilerpipe/)
boilerpipeR
Interface to the Boilerpipe Java Library
BOIN
Bayesian Optimal INterval (BOIN) Design for Single-Agent and Drug- Combination Phase I Clinical Trials
bold
Interface to Bold Systems 'API'
Bolstad
Functions for Elementary Bayesian Inference
Bolstad2
Bolstad functions
bomDataRipper
BOM data getter
BonEV
An Improved Multiple Testing Procedure for Controlling False Discovery Rates
bookdown
Authoring Books and Technical Documents with R Markdown
boolean3
Boolean Binary Response Models
BoolNet
Construction, Simulation and Analysis of Boolean Networks
Boom
Bayesian Object Oriented Modeling
BoomSpikeSlab
MCMC for Spike and Slab Regression
BoostHeaders
The Boost C++ Libraries
boostmtree
Boosted Multivariate Trees for Longitudinal Data
boostr
A modular framework to bag or boost any estimation procedure.
boostSeq
Optimized GWAS cohort subset selection for resequencing studies
boot
Bootstrap Functions (Originally by Angelo Canty for S)
bootBCa
Function to find nonparametric BCa intervals
bootES
Bootstrap Effect Sizes
bootfs
Derive Robust Feature Sets for Two or Multiclass Classification Problems
bootLR
Bootstrapped Confidence Intervals for (Negative) Likelihood Ratio Tests
BootMRMR
Bootstrap-MRMR Technique for Informative Gene Selection
bootnet
Bootstrap Methods for Various Network Estimation Routines
BootPR
Bootstrap Prediction Intervals and Bias-Corrected Forecasting
bootRes
Bootstrapped Response and Correlation Functions
bootruin
A bootstrap test for the probability of ruin in the classical risk process
bootspecdens
Testing equality of spectral densities
bootsPLS
Bootstrap Subsamplings of Sparse Partial Least Squares - Discriminant Analysis for Classification and Signature Identification
bootStepAIC
Bootstrap stepAIC
bootstrap
Functions for the Book "An Introduction to the Bootstrap"
bootSVD
Fast, Exact Bootstrap Principal Component Analysis for High Dimensional Data
bootTimeInference
Robust Performance Hypothesis Testing with the Sharpe Ratio
boottol
Bootstrap Tolerance Levels for Credit Scoring Validation Statistics
BootWPTOS
Test Stationarity using Bootstrap Wavelet Packet Tests
boral
Bayesian Ordination and Regression AnaLysis
Boruta
Wrapper Algorithm for All Relevant Feature Selection
BOS
Model-based clustering of multivariate ordinal data relying on a stochastic binary search algorithm
BoSSA
a Bunch of Structure and Sequence Analysis
bounds
Bounds for causal and sufficient-cause interactions
boussinesq
Analytic Solutions for (ground-water) Boussinesq Equation
boxoffice
Downloads Box Office Information for Given Dates (How Much Each Movie Earned in Theaters)
boxplotdbl
Double Box Plot for Two-Axes Correlation
boxr
Interface for the 'Box.com API'
bpa
Basic Pattern Analysis
bpca
Biplot of Multivariate Data Based on Principal Components Analysis
bpcp
Beta Product Confidence Procedure for Right Censored Data
bPeaks
bPeaks: an intuitive peak-calling strategy to detect transcription factor binding sites from ChIP-seq data in small eukaryotic genomes
BPEC
Bayesian Phylogeographic and Ecological Clustering
bpkde
Back-Projected Kernel Density Estimation
bpkde
Back-Projected Kernel Density Estimation
bpm
Basic functions for panel data analysis
BPRMeth
Model higher-order methylation profiles
bptwin
Cumulative incidence models for twin data
bqtl
Bayesian QTL Mapping Toolkit
BradleyTerry2
Bradley-Terry Models
braidReports
Visualize Combined Action Response Surfaces and Report BRAID Analyses
braidrm
Fitting Dose Response with the BRAID Combined Action Model
BrailleR
Improved Access for Blind Users
BRAIN
Baffling Recursive Algorithm for Isotope distributioN calculations
brainGraph
Graph Theory Analysis of Brain MRI Data
brainR
Helper functions to misc3d and rgl packages for brain imaging
BrainStars
query gene expression data and plots from BrainStars (B*)
brainwaver
Basic wavelet analysis of multivariate time series with a visualisation and parametrisation using graph theory.
Branching
Simulation and Estimation for Branching Processes
braQCA
Bootstrapped Robustness Assessment for Qualitative Comparative Analysis
brea
Bayesian Recurrent Event Analysis
breakage
SICM pipette tip geometry estimation
breakaway
Species Richness Estimation and Modeling
breakpoint
An R Package for Multiple Break-Point Detection via the Cross-Entropy Method
breakpointError
Breakpoint detection error
bReeze
Functions for wind resource assessment
brew
Templating Framework for Report Generation
brew
Templating Framework for Report Generation
brewdata
Extracting Usable Data from the Grad Cafe Results Search
brglm
Bias reduction in binomial-response generalized linear models.
brglm
Bias reduction in binomial-response generalized linear models.
bride
Brier score decomposition of probabilistic forecasts for binary events
bride
Brier score decomposition of probabilistic forecasts for binary events
bridge
Bayesian Robust Inference for Differential Gene Expression
BridgeDbR
Code for using BridgeDb identifier mapping framework from within R
bridgedist
An Implementation of the Bridge Distribution with Logit-Link as in Wang and Louis (2003)
bridger2
Genome-Wide RNA Degradation Analysis Using BRIC-Seq Data
briskaR
Biological Risk Assessment
brm
Binary Regression Model
brms
Bayesian Regression Models using Stan
brnn
Bayesian Regularization for Feed-Forward Neural Networks
Brobdingnag
Very large numbers in R
broman
Karl Broman's R Code
broom
Convert Statistical Analysis Objects into Tidy Data Frames
brotli
A Compression Format Optimized for the Web
BrowserViz
BrowserViz: interactive R/browser graphics using websockets and JSON
BrowserVizDemo
BrowserVizDemo: How to subclass BrowserViz
brr
Bayesian Inference on the Ratio of Two Poisson Rates
brranching
Fetch 'Phylogenies' from Many Sources
BRugs
Interface to the 'OpenBUGS' MCMC Software
BSagri
Statistical methods for safety assessment in agricultural field trials
bsam
Bayesian State-Space Models for Animal Movement
BSDA
Basic Statistics and Data Analysis
bsearchtools
Binary Search Tools
BSgenome
Infrastructure for Biostrings-based genome data packages and support for efficient SNP representation
BSGS
Bayesian Sparse Group Selection
BSGW
Bayesian Survival Model with Lasso Shrinkage Using Generalized Weibull Regression
bshazard
Nonparametric Smoothing of the Hazard Function
BsMD
Bayes Screening and Model Discrimination
bspec
Bayesian Spectral Inference
bspmma
bspmma: Bayesian Semiparametric Models for Meta-Analysis
BSquare
Bayesian Simultaneous Quantile Regression
BSSasymp
Asymptotic Covariance Matrices of Some BSS Mixing and Unmixing Matrix Estimates
bsseq
Analyze, manage and store bisulfite sequencing data
bssn
Birnbaum-Saunders Model Based on Skew-Normal Distribution
bst
Gradient Boosting
bsts
Bayesian Structural Time Series
btb
Beyond the Border
btergm
Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood
btergm
Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood
btf
Estimates univariate function via Bayesian trend filtering
BTLLasso
Modelling Heterogeneity in Paired Comparison Data
BTR
Training and Analysing Asynchronous Boolean Models
BTSPAS
Bayesian Time-Strat. Population Analysis
btutils
Utilities for Simple Back Testing of Trading Strategies
BTYD
Implementing Buy 'Til You Die Models
BubbleTree
BubbleTree: an intuitive visualization to elucidate tumoral aneuploidy and clonality in somatic mosaicism using next generation sequencing data
BufferedMatrix
A matrix data storage object held in temporary files
BufferedMatrixMethods
Microarray Data related methods that utlize BufferedMatrix objects
BUGSExamples
Collection of BUGS examples
bujar
Buckley-James Regression for Survival Data with High-Dimensional Covariates
bumphunter
Bump Hunter
bunchr
Analyze Bunching in a Kink or Notch Setting
bundesligR
All Final Tables of the Bundesliga
burnr
Advanced Fire History Analysis in R
BurStFin
Burns Statistics Financial
BurStMisc
Burns Statistics Miscellaneous
bursts
Markov model for bursty behavior in streams
BUS
Gene network reconstruction
BuyseTest
Generalized Pairwise Comparisons
bvarsv
Bayesian Analysis of a Vector Autoregressive Model with Stochastic Volatility and Time-Varying Parameters
bvenn
A Simple alternative to proportional Venn diagrams
bvls
The Stark-Parker algorithm for bounded-variable least squares
bvpSolve
Solvers for Boundary Value Problems of Differential Equations
bvpSolve
Solvers for Boundary Value Problems of Differential Equations
BVS
Bayesian Variant Selection: Bayesian Model Uncertainty Techniques for Genetic Association Studies
bvsflex
Integrative Bayesian variable selection with flexible priors
bWGR
Bagging Whole-Genome Regression
BWStest
Baumgartner Weiss Schindler Test of Equal Distributions
bytescircle
Statistics About Bytes Contained in a File as a Circle Plot
c060
Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models
c060
Extended Inference for Lasso and Elastic-Net Regularized Cox and Generalized Linear Models
c3net
Infering large-scale gene networks with C3NET
c3net
Infering large-scale gene networks with C3NET
C50
C5.0 Decision Trees and Rule-Based Models
C50
C5.0 Decision Trees and Rule-Based Models
ca
Simple, Multiple and Joint Correspondence Analysis
ca
Simple, Multiple and Joint Correspondence Analysis
cablecuttr
A CanIStream.It API Wrapper
cabootcrs
Bootstrap Confidence Regions for Correspondence Analysis.
cacIRT
Classification Accuracy and Consistency under Item Response Theory
CaDENCE
Conditional Density Estimation Network Construction and Evaluation
CADFtest
This package performs the CADF unit root test proposed in Hansen (1995).
CADStat
Provides a GUI to Several Statistical Methods
CAFE
Chromosmal Aberrations Finder in Expression data
CAGEr
Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
cAIC4
Conditional Akaike information criterion for lme4
Cairo
R graphics device using cairo graphics library for creating high-quality bitmap (PNG, JPEG, TIFF), vector (PDF, SVG, PostScript) and display (X11 and Win32) output
cairoDevice
Embeddable Cairo Graphics Device Driver
calACS
Calculations for All Common Subsequences
Calculator.LR.FNs
Calculator for LR Fuzzy Numbers
CALF
Coarse Approximation Linear Function
CALIB
Calibration model for estimating absolute expression levels from microarray data
CALIBERcodelists
Generate ICD10, Read and OPCS codelists
CALIBERdatamanage
Data Management Tools for CALIBER Datasets
CALIBERdrugdose
Extract drug dose from unstructured dosage text
CALIBERfma
R interface to the Freetext Matching Algorithm
CALIBERrfimpute
Multiple imputation using MICE and Random Forest
CALIBERrfimpute
Multiple imputation using MICE and Random Forest
calibFit
Statistical models and tools for assay calibration
calibrar
Automated Parameter Estimation for Complex (Ecological) Models
calibrate
Calibration of Scatterplot and Biplot Axes
CalibrateSSB
Weighting and Estimation for Panel Data with Non-Response
calibrator
Bayesian calibration of complex computer codes
callr
Call R from R
calmate
Improved Allele-Specific Copy Number of SNP Microarrays for Downstream Segmentation
CAM
Causal Additive Model (CAM)
CAMAN
Finite Mixture Models and Meta-Analysis Tools - Based on C.A.MAN
CAMAN
Finite Mixture Models and Meta-Analysis Tools - Based on C.A.MAN
camel
Calibrated Machine Learning
CAMERA
Collection of annotation related methods for mass spectrometry data
camsRad
Client for CAMS Radiation Service
camtrapR
Camera Trap Data Management and Preparation of Occupancy and Spatial Capture-Recapture Analyses
canceR
A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC.
cancerclass
Development and validation of diagnostic tests from high-dimensional molecular data
cancerGI
Analyses of Cancer Gene Interaction
CancerInSilico
An R interface for computational modeling of tumor progression
CancerMutationAnalysis
Cancer mutation analysis
CancerSubtypes
Cancer subtypes identification, validation and visualization based on genomic data
cancerTiming
Estimation of Temporal Ordering of Cancer Abnormalities
CAnD
Perform Chromosomal Ancestry Differences (CAnD) Analyses
CandidateBacon
Provides a measure of the average connectedness among as set of candidate genes and a network-specific distribution of the connectedness of random gene pairs for an arbitrary network of pair wise interactions.
candisc
Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis
candisc
Visualizing Generalized Canonical Discriminant and Canonical Correlation Analysis
candlesticks
Candlestick Pattern Recognition
Canopy
Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing
CANSIM2R
Directly Extracts Complete CANSIM Data Tables
CANS.works
Import, manipulate and analyze data from the Massachusetts CANS tool
caOmicsV
Visualization of multi-dimentional cancer genomics data
cape
Combined Analysis of Pleiotropy and Epistasis
caper
Comparative Analyses of Phylogenetics and Evolution in R
capm
Companion Animal Population Management
captioner
Numbers Figures and Creates Simple Captions
captr
Client for the Captricity API
capushe
CAlibrating Penalities Using Slope HEuristics
capwire
Estimates population size from non-invasive sampling
car
Companion to Applied Regression
car
Companion to Applied Regression
CARBayes
Spatial Generalised Linear Mixed Models for Areal Unit Data
CARBayesdata
Data Used in the Vignettes Accompanying the CARBayes and CARBayesST Packages
CARBayesST
Spatio-Temporal Generalised Linear Mixed Models for Areal Unit Data
carcass
Estimation of the Number of Fatalities from Carcass Searches
cardidates
Identification of Cardinal Dates in Ecological Time Series
cardidates
Identification of Cardinal Dates in Ecological Time Series
Cardinal
A mass spectrometry imaging toolbox for statistical analysis
cardioModel
Cardiovascular Safety Exposure-Response Modeling in Early-Phase Clinical Studies
care
High-Dimensional Regression and CAR Score Variable Selection
CARE1
Statistical package for population size estimation in capture-recapture models.
caret
Classification and Regression Training
caret
Classification and Regression Training
caretEnsemble
Ensembles of Caret Models
caretLaTeX
LaTeX Classes for the caret Package
caribou
Estimation of caribou abundance based on large scale aggregations monitored by radio telemetry
CarletonStats
Functions for Statistics Classes at Carleton College
CARLIT
Ecological Quality Ratios Calculation and Plot
caroline
A Collection of Database, Data Structure, Visualization, and Utility Functions for R
carpenter
Build Common Tables of Summary Statistics for Reports
caRpools
CRISPR AnalyzeR for Pooled CRISPR Screens
CARrampsOcl
Reparameterized and marginalized posterior sampling for conditional autoregressive models, OpenCL implementation
cartogram
Create Cartograms with R
cartography
Thematic Cartography
carx
Censored Autoregressive Model with Exogenous Covariates
caschrono
Sries Temporelles Avec R
caseMatch
Identify Similar Cases for Qualitative Case Studies
casper
Characterization of Alternative Splicing based on Paired-End Reads
caspr
Cellular Automata for Spatial Pressure in R
cat
Analysis of categorical-variable datasets with missing values
catdap
Categorical Data Analysis Program Package
catdata
Categorical Data
CatDyn
Fishery Stock Assessment by Generalized Depletion Models
cate
High Dimensional Factor Analysis and Confounder Adjusted Testing and Estimation
Category
Category Analysis
categoryCompare
Meta-analysis of high-throughput experiments using feature annotations
catenary
Fits a Catenary to Given Points
CatEncoders
Encoders for Categorical Variables
CateSelection
Categorical Variable Selection Methods
cati
Community Assembly by Traits: Individuals and Beyond
catIrt
An R Package for Simulating IRT-Based Computerized Adaptive Tests
catlearn
Formal Modeling for Psychology
catlearn
Formal Modeling for Psychology
catnet
Categorical Bayesian Network Inference
caTools
Tools: moving window statistics, GIF, Base64, ROC AUC, etc.
catR
Generation of IRT Response Patterns under Computerized Adaptive Testing
catspec
Special models for categorical variables
causaldrf
Tools for Estimating Causal Dose Response Functions
causaleffect
Deriving Expressions of Joint Interventional Distributions and Transport Formulas in Causal Models
CausalFX
Methods for Estimating Causal Effects from Observational Data
CausalGAM
Estimation of Causal Effects with Generalized Additive Models
CausalR
Causal Reasoning Methods
causalsens
Selection Bias Approach to Sensitivity Analysis for Causal Effects
Causata
Analysis utilities for binary classification and Causata users.
CAvariants
Correspondence Analysis Variants
cba
Clustering for Business Analytics
cbmisc
Claudia's collection of miscellaneous functions
cbmodels
Collection of "combined" models: PCA-LDA, PLS-LDA, etc.
CBPS
Covariate Balancing Propensity Score
cbsodataR
Statistics Netherlands (CBS) Open Data API Client
CCA
Canonical correlation analysis
CCAGFA
Bayesian Canonical Correlation Analysis and Group Factor Analysis
ccaPP
(Robust) Canonical Correlation Analysis via Projection Pursuit
cccd
Class Cover Catch Digraphs
ccChooser
Developing a core collections
cccp
Cone Constrained Convex Problems
cccp
Cone Constrained Convex Problems
cccrm
Concordance Correlation Coefficient for Repeated (and Non-Repeated) Measures
ccda
Combined Cluster and Discriminant Analysis
ccdrAlgorithm
CCDr Algorithm for Learning Sparse Gaussian Bayesian Networks
ccgarch
Conditional Correlation GARCH models
ccgarch2
Conditional Correlation GARCH Models
cchs
Cox Model for Case-Cohort Data with Stratified Subcohort-Selection
cclust
Convex Clustering Methods and Clustering Indexes
CCM
Correlation classification method (CCM)
ccmap
Combination Connectivity Mapping
CCMnet
Simulate Congruence Class Model for Networks
CCP
Significance Tests for Canonical Correlation Analysis (CCA)
CCpop
One and two locus GWAS of binary phenotype with case-control-population design
CCPROMISE
PROMISE analysis with Canonical Correlation for Two Forms of High Dimensional Genetic Data
ccrepe
ccrepe_and_nc.score
CCTpack
Cultural Consensus Theory applications to data
cda
Coupled-Dipole Approximation for Electromagnetic Scattering by Three-Dimensional Clusters of Sub-Wavelength Particles
cdb
Reading and Writing Constant DataBases
cdb
Reading and Writing Constant DataBases
cdcfluview
Retrieve U.S. Flu Season Data from the CDC FluView Portal
cdcsis
Conditional Distance Correlation and Its Related Feature Screening Method
CDF.PSIdekick
Evaluate Differentially Private Algorithms for Publishing Cumulative Distribution Functions
cdfquantreg
Quantile Regression for Random Variables on the Unit Interval
CDFt
Statistical downscaling through CDF-transform
CDLasso
Coordinate Descent Algorithms for Lasso Penalized L1, L2, and Logistic Regression
cdlTools
Tools to Download and Work with USDA Cropscape Data
CDM
Cognitive Diagnosis Modeling
CDNmoney
Components of Canadian Monetary and Credit Aggregates
cdom
R Functions to Model CDOM Spectra
CDROM
Phylogenetically Classifies Retention Mechanisms of Duplicate Genes from Gene Expression Data
cds
Constrained Dual Scaling for Detecting Response Styles
cdtRefficient
cdtRefficient
cdtRggplot2
cdtRggplot2
cdtRintroduction
cdtRintroduction
cdtRmodelling
cdtRmodelling
cdtRprogramming
cdtRprogramming
CDVine
Statistical Inference of C- And D-Vine Copulas
CEC
Cross-Entropy Clustering
cec2005benchmark
Benchmark for the CEC 2005 Special Session on Real-Parameter Optimization
cec2013
Benchmark functions for the Special Session and Competition on Real-Parameter Single Objective Optimization at CEC-2013
CEGO
Combinatorial Efficient Global Optimization
celestial
Collection of Common Astronomical Conversion Routines and Functions
cellGrowth
Fitting cell population growth models
cellHTS
Analysis of cell-based screens
cellHTS2
Analysis of cell-based screens - revised version of cellHTS
cellity
Quality Control for Single-Cell RNA-seq Data
CellMapper
Predict genes expressed selectively in specific cell types
CellNOptR
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.
cellranger
Translate Spreadsheet Cell Ranges to Rows and Columns
cellTree
Inference and visualisation of Single-Cell RNA-seq data as a hierarchical tree structure
CellularAutomaton
One-Dimensional Cellular Automata
cellVolumeDist
Functions to fit cell volume distributions and thereby estimate cell growth rates and division times
cellWise
Analyzing Data with Cellwise Outliers
cem
Coarsened Exact Matching
cems
Conditional Expectation Manifolds
CensMixReg
Censored Linear Mixture Regression Models
censNID
censored NID samples
censorcopula
Estimate Parameter of Bivariate Copula
censReg
Censored Regression (Tobit) Models
censReg
Censored Regression (Tobit) Models
CensRegMod
Fits Normal and Student-t Censored Regression Model
CensSpatial
Censored Spatial Models
censusGeography
Changes United States Census Geographic Code into Name of Location
censusr
Collect Data from the Census API
CENTIPEDE
CENTIPEDE learns a DNaseI footprint of a transcription factor and predicts its binding sites
cents
Censored time series
CEoptim
Cross-Entropy R Package for Optimization
CePa
Centrality-based pathway enrichment
CepLDA
Discriminant Analysis of Time Series in the Presence of Within-Group Spectral Variability
cepp
Context Driven Exploratory Projection Pursuit
CerioliOutlierDetection
Outlier Detection Using the Iterated RMCD Method of Cerioli (2010)
cernn
Covariance Estimation Regularized by Nuclear Norm Penalties
CexoR
An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates
CFAssay
Statistical analysis for the Colony Formation Assay
CFC
Cause-Specific Framework for Competing-Risk Analysis
CfEstimateQuantiles
Estimate quantiles using any order Cornish-Fisher expansion
cffdrs
Canadian Forest Fire Danger Rating System
cffdrs
Canadian Forest Fire Danger Rating System
CFL
Compensatory Fuzzy Logic
cg
Compare Groups, Analytically and Graphically
cgam
Constrained Generalized Additive Model
cgAUC
Calculate AUC-type measure when gold standard is continuous and the corresponding optimal linear combination of variables with respect to it.
cgdsr
R-Based API for Accessing the MSKCC Cancer Genomics Data Server (CGDS)
CGEN
An R package for analysis of case-control studies in genetic epidemiology
cgenpp
Parallel genomic evaluations
cggd
Continuous Generalized Gradient Descent
cgh
Microarray CGH analysis using the Smith-Waterman algorithm
CGHbase
CGHbase: Base functions and classes for arrayCGH data analysis.
CGHcall
Calling aberrations for array CGH tumor profiles.
cghFLasso
Detecting hot spot on CGH array data with fused lasso regression.
cghMCR
Find chromosome regions showing common gains/losses
CGHnormaliter
Normalization of array CGH data with imbalanced aberrations.
CGHregions
Dimension Reduction for Array CGH Data with Minimal Information Loss.
cghseg
Segmentation methods for array CGH analysis
cghseg
Segmentation Methods for Array CGH Analysis
cgmisc
Various functions useful in computational genetics, e.g. GWAS.
CGP
Composite Gaussian process models
cgwtools
Miscellaneous Tools
CHAID
CHi-squared Automated Interaction Detection
ChainLadder
Statistical Methods and Models for Claims Reserving in General Insurance
ChAMP
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
changepoint
Methods for Changepoint Detection
changepoint.np
Methods for Nonparametric Changepoint Detection
ChangepointTesting
Change Point Estimation for Clustered Signals
ChannelAttribution
Markov Model for the Online Multi-Channel Attribution Problem
ChannelAttributionApp
Shiny Web Application for the Multichannel Attribution Problem
Chaos01
0-1 Test for Chaos
ChaosGame
Chaos Game
ChargeTransport
Charge Transfer Rates and Charge Carrier Mobilities
charm
Analysis of DNA methylation data from CHARM microarrays
charmData
An example dataset for use with the charm package
CHAT
Clonal Heterogeneity Analysis Tool
CHCN
Canadian Historical Climate Network
cheb
Discrete Linear Chebyshev Approximation
chebpol
Multivariate Chebyshev Interpolation
CheckDigit
Calculate and verify check digits
checkmate
Fast and Versatile Argument Checks
checkpoint
Install Packages from Snapshots on the Checkpoint Server for Reproducibility
cheddar
Analysis and Visualisation of Ecological Communities
chemCal
Calibration Functions for Analytical Chemistry
ChemmineOB
R interface to a subset of OpenBabel functionalities
ChemmineR
Cheminformatics Toolkit for R
chemometrics
Multivariate Statistical Analysis in Chemometrics
ChemometricsWithR
Chemometrics with R - Multivariate Data Analysis in the Natural Sciences and Life Sciences
ChemometricsWithRData
Data for package ChemometricsWithR
ChemoSpec
Exploratory Chemometrics for Spectroscopy
cherry
Multiple Testing Methods for Exploratory Research
CHFF
Closest History Flow Field Forecasting for Bivariate Time Series
chi
The Chi Distribution
Chicago
CHiCAGO: Capture Hi-C Analysis of Genomic Organization
childsds
Calculation of standard deviation scores adduced from different growth standards
chillR
Statistical Methods for Phenology Analysis in Temperate Fruit Trees
chimera
A package for secondary analysis of fusion products
ChIPComp
Quantitative comparison of multiple ChIP-seq datasets
chipenrich
Gene Set Enrichment For ChIP-seq Peak Data
chipPCR
Toolkit of Helper Functions to Pre-Process Amplification Data
ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges
ChIPQC
Quality metrics for ChIPseq data
ChIPseeker
ChIPseeker for ChIP peak Annotation, Comparison, and Visualization
chipseq
chipseq: A package for analyzing chipseq data
ChIPseqR
Identifying Protein Binding Sites in High-Throughput Sequencing Data
ChIPsim
Simulation of ChIP-seq experiments
ChIPtest
Nonparametric Methods for Identifying Differential Enrichment Regions with ChIP-Seq Data
ChIPXpress
ChIPXpress: enhanced transcription factor target gene identification from ChIP-seq and ChIP-chip data using publicly available gene expression profiles
chngpt
Change Point Regression
CHNOSZ
Chemical Thermodynamics and Activity Diagrams
CHNOSZ
Chemical Thermodynamics and Activity Diagrams
choiceDes
Design Functions for Choice Studies
ChoiceModelR
Choice Modeling in R
choplump
Choplump tests
chopsticks
The snp.matrix and X.snp.matrix classes
chopthin
The Chopthin Resampler
chords
Estimation in respondent driven samples.
choroplethr
Simplify the Creation of Choropleth Maps in R
choroplethrAdmin1
Contains an Administrative-Level-1 Map of the World
choroplethrMaps
Contains maps used by the choroplethr package
chroGPS
chroGPS: visualizing the epigenome
chromatosimul
What the package does (short line)
chromDraw
chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion.
chromer
Interface to Chromosome Counts Database API
ChromHeatMap
Heat map plotting by genome coordinate
chromoR
Analysis of chromosomal interactions data (correction, segmentation and comparison)
chromPlot
Global visualization tool of genomic data
chromstaR
Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data
chron
Chronological Objects which can Handle Dates and Times
CHRONOS
CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis
CHsharp
Choi and Hall Style Data Sharpening
chunked
Chunkwise Text-File Processing for 'dplyr'
CIDnetworks
Generative Models for Complex Networks with Conditionally Independent Dyadic Structure
CIFsmry
Weighted summary of cumulative incidence functions
cin
Causal Inference for Neuroscience
CINdex
Chromosome Instability Index
cinf
Basic tools for chemoinformatics
CINID
Curculionidae INstar IDentification
CINOEDV
Co-Information based N-Order Epistasis Detector and Visualizer
CircE
Circumplex models Estimation
circlize
Circular Visualization
CircNNTSR
Statistical Analysis of Circular Data using Nonnegative Trigonometric Sums (NNTS) Models
CircOutlier
Detection of Outliers in Circular-Circular Regression
CircStats
Circular Statistics, from "Topics in circular Statistics" (2001)
circular
Circular Statistics
circular
Circular Statistics
cIRT
Choice Item Response Theory
cisPath
Visualization and management of the protein-protein interaction networks.
cit
Causal Inference Test
CITAN
CITation ANalysis Toolpack
CITAN
CITation ANalysis toolpack
citbcmst
CIT Breast Cancer Molecular SubTypes Prediction
citccmst
CIT Colon Cancer Molecular SubTypes Prediction
Cite
An RStudio Addin to Insert BibTex Citation in Rmarkdown Documents
CItools
Computation, comparison and sensitivity analysis of composite indicators of performance
citr
'RStudio' Add-in to Insert Markdown Citations
CityPlot
Visualization of structure and contents of a database
cjoint
AMCE Estimator for Conjoint Experiments
ckanr
Client for the Comprehensive Knowledge Archive Network ('CKAN') 'API'
Ckmeans.1d.dp
Optimal and Fast Univariate k-Means Clustering
cladoRcpp
C++ implementations of phylogenetic cladogenesis calculations
CLAG
An unsupervised non hierarchical clustering algorithm handling biological data
clamix
Clustering modal multi valued symbolic data
ClamR
Time Series Modeling for Climate Change Proxies
clarifai
Access to Clarifai API
class
Functions for Classification
ClassComparison
Classes and Methods for "Class Comparison" Problems on Microarrays
ClassDiscovery
Classes and Methods for "Class Discovery" with Microarrays or Proteomics
classGraph
Construct Graphs of S4 Class Hierarchies
classifly
Explore classification models in high dimensions
classify
Classification Accuracy and Consistency under IRT models.
ClassifyR
A framework for two-class classification problems, with applications to differential variability and differential distribution testing
classInt
Choose Univariate Class Intervals
classInt
Choose Univariate Class Intervals
ClassPrediction
Classes and Methods for "Class Prediction" with Microarrays or Proteomics
classSNitch
Classifies RNA Structure Change in Chemical Mapping Data
classyfire
Robust multivariate classification using highly optimised SVM ensembles
cleangeo
Cleaning Geometries from Spatial Objects
cleanNLP
A Tidy Data Model for Natural Language Processing
cleanUpdTSeq
This package classifies putative polyadenylation sites as true or false/internally oligodT primed
cleaver
Cleavage of Polypeptide Sequences
clere
Simultaneous Variables Clustering and Regression
clhs
Conditioned Latin Hypercube Sampling
ClickClust
Model-Based Clustering of Categorical Sequences
clickR
Fix Data and Create Report Tables from Different Objects
clickstream
Analyzes Clickstreams Based on Markov Chains
clifro
Easily Download and Visualise Climate Data from CliFlo
clikcorr
Censoring Data and Likelihood-Based Correlation Estimation
climatol
Climate Tools (Series Homogenization and Derived Products)
climbeR
Calculate Average Minimal Depth of a Maximal Subtree for 'ranger' Package Forests
ClimClass
Climate Classification According to Several Indices
climdex.pcic
PCIC Implementation of Climdex Routines
ClimDown
Climate Downscaling Library for Daily Climate Model Output
clime
Constrained L1-minimization for Inverse (covariance) Matrix Estimation
climextRemes
Tools for Analyzing Climate Extremes
ClimMob
Crowdsourcing climate-smart agriculture
climstats
R functions for working with station and gridded climate data.
climtrends
Statistical Methods for Climate Sciences
climtrends
Statistical Methods for Climate Sciences
climwin
Climate Window Analysis
clinfun
Clinical Trial Design and Data Analysis Functions
clinsig
Clinical Significance Functions
clinUtiDNA
Clinical Utility of DNA Testing
clippda
A package for the clinical proteomic profiling data analysis
clipper
Gene Set Analysis Exploiting Pathway Topology
clipr
Read and Write from the System Clipboard
clisymbols
Unicode Symbols at the R Prompt
CLME
Constrained Inference for Linear Mixed Effects Models
clogitboost
Boosting Conditional Logit Model
clogitL1
Fitting exact conditional logistic regression with lasso and elastic net penalties.
clogitLasso
Lasso Estimation of Conditional Logistic Regression Models for Matched Case-Control Studies
Clomial
Infers clonal composition of a tumor
Clonality
Clonality testing
clonotypeR
High throughput analysis of T cell antigen receptor sequences
cloudUtil
Cloud Utilization Plots
clpAPI
R Interface to C API of COIN-OR Clp
CLSOCP
A smoothing Newton method SOCP solver
clst
Classification by local similarity threshold
clstutils
Tools for performing taxonomic assignment.
clttools
Central Limit Theorem Experiments (Theoretical and Simulation)
clubSandwich
Cluster-Robust (Sandwich) Variance Estimators with Small-Sample Corrections
clue
Cluster Ensembles
ClueR
CLUster Evaluation (CLUE)
clues
Clustering Method Based on Local
CluMix
Clustering and Visualization of Mixed-Type Data
clusrank
Wilcoxon Rank Sum Test for Clustered Data
clust.bin.pair
Statistical Methods for Analyzing Clustered Matched Pair Data
clustComp
Clustering Comparison Package
clustDDist
Clustering Discrete Distributions
cluster
"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.
clusterCrit
Clustering Indices
cluster.datasets
Cluster Analysis Data Sets
ClusteredMutations
Location and Visualization of Clustered Somatic Mutations
clusterExperiment
Compare clusterings for single-cell sequencing
clusterfly
Explore clustering interactively using R and GGobi
clusterGeneration
Random Cluster Generation (with Specified Degree of Separation)
clusterGenomics
Identifying clusters in genomics data by recursive partitioning
clusterhap
Clustering Genotypes in Haplotypes
Clustericat
This package performs clustering for categorical dataset.
clustering.sc.dp
Optimal Distance-Based Clustering for Multidimensional Data with Sequential Constraint
clusternomics
Integrative Clustering for Heterogeneous Biomedical Datasets
clusterpathRcpp
Fast agglomerative convex clustering, original Rcpp implementation
clusterPower
Power calculations for cluster-randomized and cluster-randomized crossover trials
clusterProfiler
statistical analysis and visualization of functional profiles for genes and gene clusters
ClusterR
Gaussian Mixture Models, K-Means, Mini-Batch-Kmeans and K-Medoids Clustering
ClusterRankTest
Rank Tests for Clustered Data
clusterRepro
Reproducibility of gene expression clusters
clusterSEs
Calculate Cluster-Robust p-Values and Confidence Intervals
ClusterSignificance
The ClusterSignificance package provides tools to assess if clusters have a separation different from random or permuted data
clusterSim
Searching for Optimal Clustering Procedure for a Data Set
clusterStab
Compute cluster stability scores for microarray data
ClusterStability
Assessment of Stability of Individual Objects or Clusters in Partitioning Solutions
clustertend
Check the Clustering Tendency
clusteval
Evaluation of Clustering Algorithms
ClustGeo
Clustering of Observations with Geographical Constraints
clustMD
Model Based Clustering for Mixed Data
clustMixType
k-Prototypes Clustering for Mixed Variable-Type Data
ClustMMDD
Variable Selection in Clustering by Mixture Models for Discrete Data
ClustOfVar
Clustering of variables
clustrd
Methods for Joint Dimension Reduction and Clustering
clustsig
Significant Cluster Analysis
ClustVarLV
Clustering of Variables Around Latent Variables
clustvarsel
Variable Selection for Model-Based Clustering
clv
Cluster Validation Techniques
clValid
Validation of Clustering Results
CMA
Synthesis of microarray-based classification
cmaes
Covariance Matrix Adapting Evolutionary Strategy
cmaes
Covariance Matrix Adapting Evolutionary Strategy
cmaesr
Covariance Matrix Adaptation Evolution Strategy
CMC
Cronbach-Mesbah Curve
CMF
Collective matrix factorization
cmm
Categorical Marginal Models
cmna
Computational Methods for Numerical Analysis
cMonkey
cMonkey integrated biclustering algorithm
CMPControl
Control Charts for Conway-Maxwell-Poisson Distribution
CMplot
Circle Manhattan Plot
cmprsk
Subdistribution Analysis of Competing Risks
cmprskQR
Analysis of Competing Risks Using Quantile Regressions
cmprskWeb
Multistage Competing Risks Analysis for Web data
CMRCT
Fit Capture-Mark-Recapture models in continuous time.
cmrutils
Misc Functions of the Center for the Mathematical Research
cmsaf
Tools for CM SAF NetCDF Data
cmvnorm
The Complex Multivariate Gaussian Distribution
cna
A Package for Coincidence Analysis (CNA)
cnagIO
Methods for reading CNAG files
CNAnorm
A normalization method for Copy Number Aberration in cancer samples
cncaGUI
Canonical Non-Symmetrical Correspondence Analysis in R
CNEr
CNE Detection and Visualization
cnf2freq
same Chromosome N-loci F2 frequencies
cnf2freqibdtracer
same Chromosome N-loci F2 frequencies, with IBD tracing
cn.farms
cn.FARMS - factor analysis for copy number estimation
cnmlcd
Maximum Likelihood Estimation of a Log-Concave Density Function
cn.mops
cn.mops - Mixture of Poissons for CNV detection in NGS data
CNOGpro
Copy Numbers of Genes in prokaryotes
CNORdt
Add-on to CellNOptR: Discretized time treatments
CNORfeeder
Integration of CellNOptR to add missing links
CNORfuzzy
Addon to CellNOptR: Fuzzy Logic
CNORode
ODE add-on to CellNOptR
CNPBayes
Bayesian mixture models for copy number polymorphisms
CNprep
Pre-process DNA Copy Number (CN) Data for Detection of CN Events
CNTools
Convert segment data into a region by sample matrix to allow for other high level computational analyses.
CNVassoc
Association Analysis of CNV Data and Imputed SNPs
CNVassocData
Example data sets for association analysis of CNV data
cnvGSA
Gene Set Analysis of (Rare) Copy Number Variants
CNVPanelizer
Reliable CNV detection in targeted sequencing applications
CNVrd2
CNVrd2: a read depth-based method to detect and genotype complex common copy number variants from next generation sequencing data.
CNVtools
A package to test genetic association with CNV data
coala
A Framework for Coalescent Simulation
coalescentMCMC
MCMC Algorithms for the Coalescent
coalesceR
A pedagogical tool to teach the basics of coalescent theory
coarseDataTools
A Collection of Functions to Help with Analysis of Coarsely Observed Data
cobalt
Covariate Balance Tables and Plots
cobindR
Finding Co-occuring motifs of transcription factor binding sites
COBRA
Nonlinear Aggregation of Predictors
cobs
COnstrained B-Splines (Sparse Matrix Based)
cobs
COnstrained B-Splines (Sparse Matrix Based)
cobs99
Constrained B-splines -- outdated 1999 version
CoCiteStats
Different test statistics based on co-citation.
CoClust
Copula Based Cluster Analysis
COCONUT
COmbat CO-Normalization Using conTrols (COCONUT)
cocor
Comparing Correlations
cocoreg
Extracts Shared Variation in Collections of Datasets Using Regression Models
cocorresp
Co-correspondence analysis methods
cocorresp
Co-Correspondence Analysis Methods
cocron
Statistical Comparisons of Two or more Alpha Coefficients
coda
Output Analysis and Diagnostics for MCMC
codadiags
Markov chain Monte Carlo burn-in based on "bridge" statistics
cOde
Automated C Code Generation for Use with the 'deSolve' and 'bvpSolve' Packages
codebooks
Management of Survey Data
codelink
Manipulation of Codelink microarray data
codep
Multiscale Codependence Analysis
codetools
Code Analysis Tools for R
CODEX
A Normalization and Copy Number Variation Detection Method for Whole Exome Sequencing
codingMatrices
Alternative Factor Coding Matrices for Linear Model Formulae
codyn
Community Dynamics Metrics
coefficientalpha
Robust Coefficient Alpha and Omega with Missing and Non-Normal Data
coefficientalpha
Robust Cronbach's alpha with missing and non-normal data
coefplot
Plots Coefficients from Fitted Models
coenocliner
Coenocline Simulation
coenoflex
Gradient-Based Coenospace Vegetation Simulator
coexist
Species coexistence modeling and analysis
cofclust
Consensus Optimization Fuzzy Clustering
cofeatureR
Generate Cofeature Matrices
CoGAPS
Coordinated Gene Activity in Pattern Sets
COGARCH
Simulation and inferenc for COGARCH(1,1) processes
cogena
co-expressed gene-set enrichment analysis
coGPS
cancer outlier Gene Profile Sets
COHCAP
CpG Island Analysis Pipeline for Illumina Methylation Array and Targeted BS-Seq Data
CoImp
Copula Based Imputation Method
coin
Conditional Inference Procedures in a Permutation Test Framework
coin
Conditional Inference Procedures in a Permutation Test Framework
CoinMinD
Simultaneous Confidence Interval for Multinomial Proportion
cointmonitoR
Consistent Monitoring of Stationarity and Cointegrating Relationships
cointReg
Parameter Estimation and Inference in a Cointegrating Regression
cold
Count Longitudinal Data
colf
Constrained Optimization on Linear Function
CollapsABEL
Generalized CDH (GCDH) Analysis
CollocInfer
Collocation Inference for Dynamic Systems
collUtils
Auxiliary Package for Package 'CollapsABEL'
coloc
Colocalisation tests of two genetic traits
coloredICA
Implementation of Colored Independent Component Analysis and Spatial Colored Independent Component Analysis
colorfulVennPlot
Plot and add custom coloring to Venn diagrams for 2-dimensional, 3-dimensional and 4-dimensional data.
colorhcplot
Colorful Hierarchical Clustering Dendrograms
colormap
Color Palettes using Colormaps Node Module
ColorPalette
Color Palettes Generator
colorplaner
A 'ggplot2' Extension to Visualize Two Variables per Color Aesthetic Through Color Space Projections
colorRamps
Builds color tables
colorscience
Color Science Methods and Data
colorscience
Color Science Methods and Data
colorspace
Color Space Manipulation
colorspace
Color Space Manipulation
colorSpec
Color Calculations with Emphasis on Spectral Data
colortools
Tools for colors in a Hue-Saturation-Value (HSV) color model
colourlovers
R Client for the COLOURlovers API
colourpicker
A Colour Picker Tool for Shiny and for Selecting Colours in Plots
colourschemes
Data-driven colour scheme mappers
colourvision
Colour Vision Models
comato
Analysis of Concept Maps
COMBIA
Synergy/Antagonism Analyses of Drug Combinations
combinat
combinatorics utilities
Combine
Game-Theoretic Probability Combination
CombinePortfolio
Estimation of Optimal Portfolio Weights by Combining Simple Portfolio Strategies
CombinePValue
Combine a Vector of Correlated p-values
CombinS
Construction Methods of some Series of PBIB Designs
combiter
Combinatorics Iterators
CombMSC
Combined Model Selection Criteria
comclim
Community climate statistics.
coMET
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns
cometExactTest
Exact Test from the Combinations of Mutually Exclusive Alterations (CoMEt) Algorithm
comf
Functions for Thermal Comfort Research
ComICS
Computational Methods for Immune Cell-Type Subsets
commandr
Command pattern in R
commandr
Command pattern in R
CommEcol
Community Ecology Analyses
CommEcol
Community Ecology Analyses
commentr
Print Nicely Formatted Comments for Use in Script Files
CommonJavaJars
Useful libraries for building a Java based GUI under R
CommonJavaJars
Useful libraries for building a Java based GUI under R
commonmark
High Performance CommonMark and Github Markdown Rendering in R
CommonTrend
Extract and plot common trends from a cointegration system. Calculate P-value for Johansen Statistics.
CommT
Comparative Phylogeographic Analysis using the Community Tree Framework
COMMUNAL
Robust Selection of Cluster Number K
CommunityCorrelogram
Ecological Community Correlogram
CoModes
This package performs clustering for categorical dataset by using a conditional modes mixture model
Comp2ROC
Compare Two ROC Curves that Intersect
compactr
Creates empty plots with compact axis notation
compare
Comparing Objects for Differences
compareC
Compare Two Correlated C Indices with Right-censored Survival Outcome
CompareCausalNetworks
Interface to Diverse Estimation Methods of Causal Networks
compareDF
Do a Git Style Diff of the Rows Between Two Dataframes with Similar Structure
compareGroups
Descriptive Analysis by Groups
compareODM
comparison of medical forms in CDISC ODM format
CompareTests
Correct for Verification Bias in Diagnostic Accuracy & Agreement
comparison
Multivariate likelihood ratio calculation and evaluation
COMPASS
Combinatorial Polyfunctionality Analysis of Single Cells
compcodeR
RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods
compeir
Event-specific incidence rates for competing risks data
compendiumdb
Tools for Retrieval and Storage of Functional Genomics Data
compEpiTools
Tools for computational epigenomics
compete
Analyzing Social Hierarchies
CompGLM
Conway-Maxwell-Poisson GLM and distribution functions
CompGO
An R pipeline for .bed file annotation, comparing GO term enrichment between gene sets and data visualisation
compHclust
Complementary Hierarchical Clustering
Compind
Composite Indicators Functions
ComplexAnalysis
Numerically Evaluate Integrals and Derivatives (also Higher Order) of Vector- And Complex-Valued Functions
ComplexHeatmap
Making Complex Heatmaps
complexplus
Functions of Complex or Real Variable
complmrob
Robust Linear Regression with Compositional Data as Covariates
CompLognormal
Functions for actuarial scientists
compoisson
Conway-Maxwell-Poisson Distribution
COMPoissonReg
Conway-Maxwell Poisson (COM-Poisson) Regression
Compositional
Compositional Data Analysis
compositions
Compositional Data Analysis
compound.Cox
Estimation and Gene Selection Based on the Compound Covariate Method Under the Cox Proportional Hazard Model
Compounding
Computing Continuous Distributions
CompQuadForm
Distribution Function of Quadratic Forms in Normal Variables
CompR
Paired Comparison Data Analysis
CompRandFld
Composite-Likelihood Based Analysis of Random Fields
CompRandFld
Composite-Likelihood Based Analysis of Random Fields
compute.es
Compute Effect Sizes
Conake
Continuous Associated Kernel Estimation
concatenate
Human-Friendly Text from Unknown Strings
conclust
Pairwise Constraints Clustering
ConConPiWiFun
Optimisation with Continuous Convex Piecewise (Linear and Quadratic) Functions
concor
Concordance
concordance
Product Concordance
concreg
Concordance regression
cond
Approximate conditional inference for logistic and loglinear models
condformat
Conditional Formatting in Data Frames
condGEE
Parameter estimation in conditional GEE for recurrent event gap times
condmixt
Conditional Density Estimation with Neural Network Conditional Mixtures
condMVNorm
Conditional Multivariate Normal Distribution
CONDOP
Condition-Dependent Operon Predictions
CondReg
Condition Number Regularized Covariance Estimation
condSURV
Estimation of the Conditional Survival Function for Ordered Multivariate Failure Time Data
condvis
Conditional Visualization for Statistical Models
coneproj
Primal or Dual Cone Projections with Routines for Constrained Regression
conf.design
Construction of factorial designs
CONFESS
Cell OrderiNg by FluorEScence Signal
confidence
Confidence Estimation of Environmental State Classifications
config
Manage Environment Specific Configuration Values
conformal
Conformal Prediction for Regression and Classification
conformal
Conformal mapping from a polygon to a disk
confreq
Configural Frequencies Analysis Using Log-Linear Modeling
conicfit
Algorithms for Fitting Circles, Ellipses and Conics Based on the Work by Prof. Nikolai Chernov
conicfit
Algorithms for Fitting Circles, Ellipses and Conics Based on the Work by Prof. Nikolai Chernov
conics
Plot Conics
Conigrave
Flexible Tools for Multiple Imputation
conjoint
Conjoint analysis package
ConjointChecks
A package to check the cancellation axioms of conjoint measurement.
connect3
A Tool for Reproducible Research by Converting 'LaTeX' Files Generated by R Sweave to Rich Text Format Files
ConnMatTools
Tools for Working with Connectivity Data
conover.test
Conover-Iman Test of Multiple Comparisons Using Rank Sums
ConR
Computation of Parameters Used in Preliminary Assessment of Conservation Status
ConsensusClusterPlus
ConsensusClusterPlus
consensusSeekeR
Detection of consensus regions inside a group of experiences using genomic positions and genomic ranges
ConSpline
Partial Linear Least-Squares Regression using Constrained Splines
ConsRank
Compute the Median Ranking(s) According to the Kemeny's Axiomatic Approach
constants
Defines some physical constants and functions commonly used in optics, plasmonics.
constrainedKriging
Constrained, Covariance-Matching Constrained and Universal Point or Block Kriging
ContaminatedMixt
Model-Based Clustering and Classification with the Multivariate Contaminated Normal Distribution
contfrac
Continued Fractions
contiBAIT
Improves Early Build Genome Assemblies using Strand-Seq Data
conting
Bayesian Analysis of Contingency Tables
contoureR
Contouring of Non-Regular Three-Dimensional Data
contrast
A collection of contrast methods
contrast
A Collection of Contrast Methods
controlTest
Median Comparison for Two-Sample Right-Censored Survival Data
conumee
Enhanced copy-number variation analysis using Illumina DNA methylation arrays
ConvCalendar
Converts dates between calendars
ConvergenceConcepts
Seeing convergence concepts in action
convert
Convert Microarray Data Objects
convertGraph
Convert Graphical Files Format
convertr
Convert Between Units
convevol
Quantifies and assesses the significance of convergent evolution
convey
Income Concentration Analysis with Complex Survey Samples
convoi
Convex Optimization in R
convoSPAT
Convolution-Based Nonstationary Spatial Modeling
cooccur
Probabilistic Species Co-Occurrence Analysis in R
cooccurNet
Co-Occurrence Network
coop
Co-Operation: Fast Covariance, Correlation, and Cosine Similarity Operations
cooptrees
Cooperative aspects of optimal trees in weighted graphs
copa
Functions to perform cancer outlier profile analysis.
copBasic
General Bivariate Copula Theory and Many Utility Functions
copCAR
Fitting the copCAR Regression Model for Discrete Areal Data
COPDSexualDimorphism
Sexual dimorphic and COPD differential analysis for gene expression and methylation.
cope
Coverage Probability Excursion (CoPE) Sets
copula
Multivariate Dependence with Copulas
copula
Multivariate Dependence with Copulas
CopulaDTA
Copula Based Bivariate Beta-Binomial Model for Diagnostic Test Accuracy Studies
copulaedas
Estimation of Distribution Algorithms Based on Copulas
Copula.Markov
Estimation and Statistical Process Control Under Copula-Based Time Series Models
CopulaRegression
Bivariate Copula Based Regression Models
CopulaREMADA
Copula Mixed Effect Models for Bivariate and Trivariate Meta-Analysis of Diagnostic Test Accuracy Studies
CopyDetect
Computing Statistical Indices to Detect Answer Copying on Multiple-Choice Tests
copynumber
Segmentation of single- and multi-track copy number data by penalized least squares regression.
CopyNumber450k
R package for calling CNV from Illumina 450k methylation microarrays
CopyNumber450kCancer
Baseline Correction for Copy Number Data from Cancer Samples
CopywriteR
Copy number information from targeted sequencing using off-target reads
coRanking
Co-Ranking Matrix
Corbi
Collection of Rudimentary Bioinformatics Tools
Corbi
Collection of Rudimentary Bioinformatics Tools
corclass
Correlational Class Analysis
corcounts
Generate correlated count random variables
cord
Community Estimation in G-Models via CORD
cordillera
OPTICS Cordillera
CORE
Cores of Recurrent Events
CoRegNet
CoRegNet : reconstruction and integrated analysis of co-regulatory networks
corehunter
Multi-Purpose Core Subset Selection
CORElearn
Classification, Regression and Feature Evaluation
coreNLP
Wrappers Around Stanford CoreNLP Tools
coreSim
Core Functionality for Simulating Quantities of Interest from Generalised Linear Models
coreTDT
TDT for compound heterozygous and recessive models
corHMM
Analysis of Binary Character Evolution
corHMM
Analysis of binary character evolution
corkscrew
Preprocessor for Data Modeling
corlink
Record Linkage, Incorporating Imputation for Missing Agreement Patterns, and Modeling Correlation Patterns Between Fields
CORM
The Clustering of Regression Models Method
Cormotif
Correlation Motif Fit
CorMut
Detect the correlated mutations based on selection pressure
coRNAi
Analysis of co-knock-down RNAi data
corpcor
Efficient Estimation of Covariance and (Partial) Correlation
corpora
Statistics and data sets for corpus frequency data
corpora
Statistics and Data Sets for Corpus Frequency Data
corr2D
Implementation of 2D Correlation Analysis in R
CorrBin
Nonparametrics with Clustered Binary and Multinomial Data
CorrBin
Nonparametrics with Clustered Binary and Multinomial Data
correctedAUC
Correcting AUC for Measurement Error
CorrectOverloadedPeaks
Correct Overloaded Peaks from GC-APCI-MS Data
CorReg
Linear Regression Based on Linear Structure Between Covariates
corregp
Functions and Methods for Correspondence Regression
Correlplot
A collection of functions for graphing correlation matrices
CORREP
Multivariate Correlation Estimator and Statistical Inference Procedures.
corrgram
Plot a Correlogram
CorrMixed
Estimate Correlations Between Repeatedly Measured Endpoints (E.g., Reliability) Based on Linear Mixed-Effects Models
corrplot
Visualization of a Correlation Matrix
corrr
Correlations in R
corrsieve
CorrSieve
CorrToolBox
Modeling Correlational Magnitude Transformations in Discretization Contexts
corTools
Tools for processing data after a Genome Wide Association Study
CoSeg
An R package for cosegregation analysis and simulating pedigrees
coseq
Co-Expression Analysis of Sequencing Data
COSINE
COndition SpecIfic sub-NEtwork
cosinor
Tools for estimating and predicting the cosinor model
cosmiq
cosmiq - COmbining Single Masses Into Quantities
cosmoFns
Functions for cosmological distances, times, luminosities, etc.
CosmoPhotoz
Photometric redshift estimation using generalized linear models
cosmosR
cosmosR
COSNet
Cost Sensitive Network for node label prediction on graphs with highly unbalanced labelings
cosso
Fit Regularized Nonparametric Regression Models Using COSSO Penalty.
costat
Time series costationarity determination
CosW
The CosW Distribution
cotrend
Consistant Cotrend Rank Selection
couchDB
Connect to and Work with CouchDB Databases
COUNT
Functions, Data and Code for Count Data
CountClust
Clustering and Visualizing RNA-Seq Expression Data using Grade of Membership Models
Counterfactual
Estimation and Inference Methods for Counterfactual Analysis
Countr
Flexible Univariate Count Models Based on Renewal Processes
countreg
Count Data Regression
countrycode
Convert Country Names and Country Codes
CountsEPPM
Mean and Variance Modeling of Count Data
countytimezones
Convert from UTC to Local Time for United States Counties
countyweather
Compiles Meterological Data for U.S. Counties
COUSCOus
A Residue-Residue Contact Detecting Method
covafillr
Local Polynomial Regression of State Dependent Covariates in State-Space Models
covBM
Brownian Motion Processes for 'nlme'-Models
covEB
Empirical Bayes estimate of block diagonal covariance matrices
CoverageView
Coverage visualization package for R
covLCA
Latent Class Models with Covariate Effects on Underlying and Measured Variables
covmat
Covariance Matrix Estimation
covr
Test Coverage for Packages
covreg
A simultaneous regression model for the mean and covariance
covRNA
Multivariate Analysis of Transcriptomic Data
covRobust
Robust Covariance Estimation via Nearest Neighbor Cleaning
CovSel
Model-Free Covariate Selection
CovSelHigh
Model-Free Covariate Selection in High Dimensions
covsep
Tests for Determining if the Covariance Structure of 2-Dimensional Data is Separable
covTest
Computes covariance test for adaptive linear modelling
cowplot
Streamlined Plot Theme and Plot Annotations for 'ggplot2'
cowsay
Messages, Warnings, Strings with Ascii Animals
CoxBoost
Cox models by likelihood based boosting for a single survival endpoint or competing risks
CoxFlexBoost
Boosting Flexible Cox Models (with Time-Varying Effects)
coxinterval
Cox-Type Models for Interval-Censored Data
coxme
Mixed Effects Cox Models
Coxnet
Regularized Cox Model
coxphf
Cox regression with Firth's penalized likelihood
coxphw
Weighted Estimation in Cox Regression
CoxPlus
Cox Regression (Proportional Hazards Model) with Multiple Causes and Mixed Effects
CoxRidge
Cox Models with Dynamic Ridge Penalties
coxrobust
Robust Estimation in Cox Model
coxsei
Fitting a CoxSEI Model
CP
Conditional Power Calculations
cp4p
Calibration Plot for Proteomics
cpa
Confirmatory Path Analysis through the d-sep tests
cpca
Methods to perform Common Principal Component Analysis (CPCA)
CPE
Concordance Probability Estimates in Survival Analysis
CpGassoc
Association Between Methylation and a Phenotype of Interest
cpgen
Parallelized Genomic Prediction and GWAS
CpGFilter
CpG Filtering Method Based on Intra-class Correlation Coefficients
CPHshape
Find the maximum likelihood estimator of the shape constrained hazard baseline and the effect parameters in the Cox proportional hazards model
cpk
Clinical Pharmacokinetics
cplexAPI
R Interface to C API of IBM ILOG CPLEX
cplm
Compound Poisson Linear Models
cpm
Sequential and Batch Change Detection Using Parametric and Nonparametric Methods
CPMCGLM
Correction of the pvalue after multiple coding
Cprob
Conditional probability function of a competing event
cpvSNP
Gene set analysis methods for SNP association p-values that lie in genes in given gene sets
cqn
Conditional quantile normalization
cqrReg
Quantile, Composite Quantile Regression and Regularized Versions
cquad
Conditional Maximum Likelihood for Quadratic Exponential Models for Binary Panel Data
CR
Power Calculation for Weighted Log-Rank Tests in Cure Rate Models
CRAC
Cosmology R Analysis Code
cRacker
R-script suite for automated processing of proteomic peptide lists
crackR
Probabilistic damage tolerance analysis for fatigue cracking of metallic aerospace structures
cramer
Multivariate nonparametric Cramer-Test for the two-sample-problem
crandatapkgs
Find Data-Only Packages on CRAN
crank
Completing Ranks
cranlogs
Download Logs from the 'RStudio' 'CRAN' Mirror
crantastic
Various R tools for http://crantastic.org/
crawl
Fit Continuous-Time Correlated Random Walk Models to Animal Movement Data
crayon
Colored Terminal Output
crblocks
Categorical Randomized Block Data Analysis
crch
Censored Regression with Conditional Heteroscedasticity
CreditMetrics
Functions for calculating the CreditMetrics risk model
creditr
Credit Default Swaps in R
credule
Credit Default Swap Functions
cremo
cremo: Comparative REndering of Model Outputs
CRF
Conditional Random Fields
CRF
Conditional Random Fields
cricketr
Analyze Cricketers Based on ESPN Cricinfo Statsguru
CRImage
CRImage a package to classify cells and calculate tumour cellularity
crimCV
Group-Based Modelling of Longitudinal Data
crimelinkage
Statistical Methods for Crime Series Linkage
CRISPRseek
Design of target-specific guide RNAs in CRISPR-Cas9, genome-editing systems
crisprseekplus
crisprseekplus
CrispRVariants
Tools for counting and visualising mutations in a target location
crlmm
Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays
CRM
Continual Reassessment Method (CRM) for Phase I Clinical Trials
crmn
CCMN and other noRMalizatioN methods for metabolomics data
crmPack
Object-Oriented Implementation of CRM Designs
crn
Downloads and Builds datasets for Climate Reference Network
crop
Graphics Cropping Tool
crop
Graphics Cropping Tool
cropData
Modelling crop trial data
cropr
simulate crop growth
CrossClustering
A Partial Clustering Algorithm with Automatic Estimation of the Number of Clusters and Identification of Outliers
crossdes
Construction of Crossover Designs
crossmatch
The Cross-match Test
crossmeta
Cross Platform Meta-Analysis of Microarray Data
Crossover
Analysis and Search of Crossover Designs
crossReg
Confidence intervals for crossover points of two simple regression lines
CrossVA
Verbal Autopsy Data Transform for Use with Various Coding Algorithms
crossval
Generic Functions for Cross Validation
CrossVal
Classes and methods for cross validation of "class prediction" with microarrays or proteomics
CrossValidate
Classes and Methods for Cross Validation of "Class Prediction" with Microarrays or Proteomics
crp.CSFP
CreditRisk+ Portfolio Model
crqa
Cross-Recurrence Quantification Analysis for Categorical and Continuous Time-Series
crrp
Penalized Variable Selection in Competing Risks Regression
crrSC
Competing risks regression for Stratified and Clustered data
crrstep
Stepwise Covariate Selection for the Fine & Gray Competing Risks Regression Model
crs
Categorical Regression Splines
crskdiag
Diagnostics for Fine and Gray Model
crsnls
Nonlinear Regression Parameters Estimation by 'CRS4HC' and 'CRS4HCe'
crtests
Classification and Regression Tests
CRTgeeDR
Doubly Robust Inverse Probability Weighted Augmented GEE Estimator
CRTSize
Sample Size Estimation Functions for Cluster Randomized Trials
crul
HTTP Client
crules
Classification Rules
crunch
Crunch.io Data Tools
cruts
Interface to Climatic Research Unit Time-Series Version 3.21 Data
CrypticIBDcheck
Identifying cryptic relatedness in genetic association studies
CryptRndTest
Statistical Tests for Cryptographic Randomness
cryst
Calculate the Relative Crystallinity of Starch by XRD and FTIR
csampling
Functions for Conditional Simulation in Regression-Scale Models
CSAR
Statistical tools for the analysis of ChIP-seq data
csaw
ChIP-Seq Analysis with Windows
CSclone
Bayesian Nonparametric Modeling in R
CSFA
Connectivity Scores with Factor Analysis
cSFM
Covariate-adjusted Skewed Functional Model (cSFM)
cshapes
The CShapes Dataset and Utilities
cshapes
CShapes Dataset and Utilities
cslogistic
Conditionally Specified Logistic Regression
csn
Closed Skew-Normal Distribution
csn
Closed Skew-Normal Distribution
csound
Accessing Csound functionality through R
csp
Correlates of State Policy Data Set in R
csrplus
Methods to Test Hypotheses on the Distribution of Spatial Point Processes
csSAM
csSAM - cell-specific Significance Analysis of Microarrays
csSAM
csSAM - cell-specific Significance Analysis of Microarrays
CSSP
ChIP-Seq Statistical Power
cssTools
Cognitive Social Structure Tools
cstab
Selection of Number of Clusters via Normalized Clustering Instability
cstar
Substantive significance testing for regression estimates and marginal effects.
csvread
Fast Specialized CSV File Loader
csvy
Import and Export CSV Data with a YAML Metadata Header
ctc
Cluster and Tree Conversion.
ctglm
ctglm
cthmm
Latent Continuous Time Markov Chains
cthreshER
Continuous Threshold Expectile Regression
ctl
Correlated Trait Locus (CTL) Mapping in R
ctm
Conditional Transformation Models
CTM
A Text Mining Toolkit for Chinese Document
ctmcd
Estimating the Parameters of a Continuous-Time Markov Chain from Discrete-Time Data
ctmcmove
Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains
ctmcmove
Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains
ctmcMove
Modeling Animal Movement with Continuous-Time Discrete-Space Markov Chains
ctmDevel
Conditional Transformation Models
ctmm
Continuous-Time Movement Modeling
ctqr
Censored and Truncated Quantile Regression
cts
Continuous Time Autoregressive Models
ctsem
Continuous Time Structural Equation Modelling
ctsGE
Clustering of Time Series Gene Expression data
CTT
Classical Test Theory Functions
CTTShiny
Classical Test Theory via Shiny
ctv
CRAN Task Views
ctv
CRAN Task Views
CUB
A Class of Mixture Models for Ordinal Data
cubature
Adaptive multivariate integration over hypercubes
cubfits
Codon Usage Bias Fits
Cubist
Rule- and Instance-Based Regression Modeling
Cubist
Rule- and Instance-Based Regression Modeling
cudaBayesreg
CUDA Parallel Implementation of a Bayesian Multilevel Model for fMRI Data Analysis
cudaBayesregData
Data sets for the examples used in the package "cudaBayesreg"
cudia
CUDIA Cross-level Imputation
CUFF
Charles's Utility Function using Formula
CulturalAnalytics
Functions for statistical analysis and plotting of image properties
cummeRbund
Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.
CUMP
Analyze Multivariate Phenotypes by Combining Univariate Results
cumplyr
Extends ddply to allow calculation of cumulative quantities.
cumSeg
Change point detection in genomic sequences
curl
A Modern and Flexible Web Client for R
curlconverter
Tools to Transform 'cURL' Command-Line Calls to 'httr' Requests
currentSurvival
Estimation of CCI and CLFS Functions
curry
Partial Function Application with %<%, %-<%, and %><%
curve
Dynamic Systems Estimation - Curvature Extensions
curvetest
The package will formally test two curves represented by discrete data sets to be statistically equal or not when the errors of the two curves were assumed either equal or not using the tube formula to calculate the tail probabilities.
curvHDR
Filtering of Flow Cytometry Samples
cusp
Cusp-Catastrophe Model Fitting Using Maximum Likelihood
cusp
Cusp-Catastrophe Model Fitting Using Maximum Likelihood
customizedTraining
Customized Training for Lasso and Elastic-Net Regularized Generalized Linear Models
customProDB
Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search.
CUSUMdesign
Compute Decision Interval and Average Run Length for CUSUM Charts
cutoffR
CUTOFF: A Spatio-temporal Imputation Method
cuttlefish.model
An R package to perform LPUE standardization and stock assessment of the English Channel cuttlefish stock using a two-stage biomass model
cvAUC
Cross-Validated Area Under the ROC Curve Confidence Intervals
CVcalibration
Estimation of the Calibration Equation with Error-in Observations
CVD
Color Vision Deficiencies
CVD
Color Vision Deficiencies
CVE
Cancer Variant Explorer
cvGWAS
Genome-wide association analysis based on predictive ability
cvm.test
Discrete Cramer von Mises Goodness-of-Fit Tests
cvplogistic
Penalized Logistic Regression Model using Majorization Minimization by Coordinate Descent (MMCD) Algorithm
cvq2
Calculate the predictive squared correlation coefficient
cvrcalc
Cardiovascular Risk Calculator
CVST
Fast Cross-Validation via Sequential Testing
CVThresh
Level-Dependent Cross-Validation Thresholding
cvTools
Cross-validation tools for regression models
CVTuningCov
Regularized Estimators of Covariance Matrices with CV Tuning
cvxbiclustr
Convex Biclustering Algorithm
cvxclustr
Splitting methods for convex clustering
cwhmisc
Miscellaneous Functions for Math, Plotting, Printing, Statistics, Strings, and Tools
cwm
Cluster Weighted Models by EM algorithm
cxxfunplus
extend cxxfunction by saving the dynamic shared objects
cycle
Significance of periodic expression pattern in time-series data
cycleRtools
Tools for Cycling Data Analysis
cyclocomp
Cyclomatic Complexity of R Code
cycloids
cycloids
Cyclops
Cyclic Coordinate Descent for Logistic, Poisson and Survival Analysis
cymruservices
Query 'Team Cymru' 'IP' Address, Autonomous System Number ('ASN'), Border Gateway Protocol ('BGP'), Bogon and 'Malware' Hash Data Services
cyphid
Cycle and Phase Identification for mastication data
cystiSim
Agent-Based Model for Taenia_solium Transmission and Control
cytoDiv
Cytometric diversity indices
cytofkit
cytofkit: an integrated mass cytometry data analysis pipeline
CytoML
GatingML interface for openCyto
D2C
Predicting Causal Direction from Dependency Features
d3heatmap
Interactive Heat Maps Using 'htmlwidgets' and 'D3.js'
D3M
Two Sample Test with Wasserstein Metric
d3Network
Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R
D3partitionR
Plotting D3 Hierarchical Plots in R and Shiny
d3r
'd3.js' Utilities for R
DAAG
Data Analysis and Graphics Data and Functions
DAAGbio
Data Sets and Functions, for Demonstrations with Expression Arrays and Gene Sequences
DAAGxtras
Data Sets and Functions, supplementary to DAAG
dad
Three-Way Data Analysis Through Densities
dada2
Accurate, high-resolution sample inference from amplicon sequencing data
dae
Functions Useful in the Design and ANOVA of Experiments
daewr
Design and Analysis of Experiments with R
daewr
Design and Analysis of Experiments with R
daff
Diff, Patch and Merge for Data.frames
dafs
Data analysis for forensic scientists
dagbag
Learning directed acyclic graphs (DAGs) through bootstrap aggregating
DAGGER
Consensus genetic maps
dagitty
Graphical Analysis of Structural Causal Models
dagitty
Graphical Analysis of Structural Causal Models
dagLogo
dagLogo
dagR
R functions for directed acyclic graphs
Daim
Diagnostic accuracy of classification models.
dairy
Functions and models related to dairy production
DAISIE
Dynamical Assembly of Islands by Speciation, Immigration and Extinction
DAKS
Data Analysis and Knowledge Spaces
DALY
The DALY Calculator - Graphical User Interface for Probabilistic DALY Calculation in R
dam
Data Analysis Metabolomics
daMA
Efficient design and analysis of factorial two-colour microarray data
DamiaNN
Neural Network Numerai
DAMisc
Dave Armstrong's Miscellaneous Functions
DAMisc
Dave Armstrong's Miscellaneous Functions
DAMOCLES
Dynamic Assembly Model of Colonization, Local Extinction and Speciation
dams
Dams in the United States from the National Inventory of Dams (NID)
DandEFA
Dandelion Plot for R-Mode Exploratory Factor Analysis
DanteR
Proteomics data analysis tool
DAPAR
Tools for the Differential Analysis of Proteins Abundance with R
darch
Package for Deep Architectures and Restricted Boltzmann Machines
Dark
The Analysis of Dark Adaptation Data
darksky
Tools to Work with the Dark Sky API
DART
Denoising Algorithm based on Relevance network Topology
darts
Statistical Tools to Analyze Your Darts Game
dashboard
Interactive Data Visualization with D3.js
DASiR
Distributed Annotation System in R
DatABEL
File-Based Access to Large Matrices Stored on HDD in Binary Format
datacheck
Tools for Checking Data Consistency
datacheckr
Data Checking
DataClean
Data Cleaning
DataCombine
Tools for Easily Combining and Cleaning Data Sets
datadr
Divide and Recombine for Large, Complex Data
DataExplorer
Data Explorer
dataframes2xls
Write Data Frames to Xls Files
datafsm
Estimating Finite State Machine Models from Data
DataLoader
Import Multiple File Types
datamap
A system for mapping foreign objects to R variables and environments
datamart
Unified access to your data sources
dataonderivatives
Easily Source Publicly Available Data on Derivatives
dataone
R Interface to the DataONE REST API
datapack
A Flexible Container to Transport and Manipulate Data and Associated Resources
datapasta
RStudio Addins for Data Copy-Pasta
dataQualityR
Performs variable level data quality checks and generates summary statistics
dataRetrieval
Retrieval Functions for USGS and EPA Hydrologic and Water Quality Data
datarobot
DataRobot Predictive Modeling API
Dataset
Handling survey data in R. (official release)
datastepr
An Implementation of a SAS-Style Data Step
data.table
Extension of `data.frame`
data.table
Extension of data.frame
data.tree
General Purpose Hierarchical Data Structure
datautils
Support functions for packages VBmix, semisupKernelPCA, and patchPlot.
dataview
Data and Workspace Browser for Terminals
date
Functions for handling dates
date
Functions for handling dates
DATforDCEMRI
Deconvolution Analysis Tool for Dynamic Contrast Enhanced MRI
dave
Functions for "Data Analysis in Vegetation Ecology"
DAVIDQuery
Retrieval from the DAVID bioinformatics data resource into R
Davies
The Davies Quantile Function
dawai
Discriminant Analysis with Additional Information
dbarts
Discrete Bayesian Additive Regression Trees Sampler
DBChIP
Differential Binding of Transcription Factor with ChIP-seq
dbConnect
Provides a graphical user interface to connect with databases that use MySQL.
dbEmpLikeGOF
Goodness-of-fit and two sample comparison tests using sample entropy
dbEmpLikeNorm
Test for joint assessment of normality
DBEST
Detecting Breakpoints and Estimating Segments in Trend
dbfaker
A Tool to Ensure the Validity of Database Writes
DBGSA
methods of distance-based gene set functional enrichment analysis.
dbhydroR
'DBHYDRO' Hydrologic and Water Quality Data
DBI
R Database Interface
DBItest
Testing 'DBI' Back Ends
DBKGrad
Discrete Beta Kernel Graduation of Mortality Data
dblcens
Compute the NPMLE of distribution from doubly censored data
dbmss
Distance-Based Measures of Spatial Structures
dbscan
Density Based Clustering of Applications with Noise (DBSCAN) and Related Algorithms
dbstats
Distance-Based Statistics
DCchoice
Analyzing Dichotomous Choice Contingent Valuation Data
DCchoice
Analyzing Dichotomous Choice Contingent Valuation Data
dcemri
A Package for Medical Image Analysis
dcemriS4
A Package for Medical Image Analysis (S4 implementation)
dcemriS4
A Package for Image Analysis of DCE-MRI (S4 Implementation)
DCG
Data Cloud Geometry (DCG): Using Random Walks to Find Community Structure in Social Network Analysis
DCGL
Differential Co-expression Analysis and Differential Regulation Analysis of Gene Expression Microarray Data
dcGOR
Analysis of Ontologies and Protein Domain Annotations
dcGOR
Analysis of Ontologies and Protein Domain Annotations
dcGSA
Distance-correlation based Gene Set Analysis for longitudinal gene expression profiles
dChipIO
Methods for Reading dChip Files
dChipIO
Methods for reading dChip files
DChIPRep
DChIPRep - Analysis of chromatin modification ChIP-Seq data with replication
DCL
Claims Reserving under the Double Chain Ladder Model
dclone
Data Cloning and MCMC Tools for Maximum Likelihood Methods
dclone
Data Cloning and MCMC Tools for Maximum Likelihood Methods
DCluster
Functions for the Detection of Spatial Clusters of Diseases
DCluster
Functions for the Detection of Spatial Clusters of Diseases
DClusterm
Model-based detection of disease clusters
DCM
Data Converter Module
dcmle
Hierarchical Models Made Easy with Data Cloning
dcmr
Attribute profile estimation using Diagnostic Classification Models and MCMC
DCODE
List Linear n-Peptide Constraints for Overlapping Protein Regions
dCovTS
Distance Covariance and Correlation for Time Series Analysis
dcv
Conventional Cross-validation statistics for climate-growth model
ddalpha
Depth-Based Classification and Calculation of Data Depth
ddCt
The ddCt Algorithm for the Analysis of Quantitative Real-Time PCR (qRT-PCR)
DDD
Diversity-Dependent Diversification
ddeploy
Wrapper for the Duke Deploy REST API
ddepn
Dynamic Deterministic Effects Propagation Networks: Infer signalling networks for timecourse RPPA data.
ddgraph
Distinguish direct and indirect interactions with Graphical Modelling
DDHFm
Variance Stabilization by Data-Driven Haar-Fisz (for Microarrays)
DDIwR
DDI with R
DDIwR
DDI with R
ddpcr
Analysis and Visualization of Droplet Digital PCR in R and on the Web
ddR
Distributed Data Structures in R
DDRTree
Learning Principal Graphs with DDRTree
ddst
Data Driven Smooth Tests
deadband
Statistical Deadband Algorithms Comparison
DeadCanMove
Assess how spatial roadkill patterns change with temporal sampling scheme
deal
Learning Bayesian Networks with Mixed Variables
deamer
Deconvolution density estimation with adaptive methods for a variable prone to measurement error
debias
Functions implementing MLE,its bias reduction for small samples and related issues
deBInfer
Bayesian Inference for Differential Equations
debrowser
debrowser: Interactive Differential Expresion Analysis Browser
debug
printf-style debugging
debug
MVB's debugger for R
debugme
Debug R Packages
DECIDE
DEComposition of Indirect and Direct Effects
DECIPHER
Tools for curating, analyzing, and manipulating biological sequences
decision
Statistical Decision Analysis
DecisionCurve
Calculate and Plot Decision Curves
decisionSupport
Quantitative Support of Decision Making under Uncertainty
decode
Differential Co-Expression and Differential Expression Analysis
decoder
Decode Coded Variables to Plain Text (and Vice Versa)
decomp
Various functions to quantify and decompose health inequalities
decompr
Global-Value-Chain Decomposition
decon
Deconvolution Estimation in Measurement Error Models
DeconRNASeq
Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data
deconstructSigs
Identifies Signatures Present in a Tumor Sample
deconvolveR
Empirical Bayes Estimation Strategies
DeconWK
Deconvolution by Weighted Kernels
decUpdate
Update of matrix decompositions
DEDS
Differential Expression via Distance Summary for Microarray Data
Deducer
A Data Analysis GUI for R
DeducerAlpha
Tools for aggregating scale items
DeducerANOVA
Factorial ANOVA for Deducer
DeducerExtras
Additional dialogs and functions for Deducer
DeducerPlugInExample
Deducer Plug-in Example
DeducerPlugInScaling
Reliability and factor analysis plugin
DeducerPlugInScaling
Reliability and factor analysis plugin
DeducerPSY220
PSY220 Deducer Plug-In
DeducerReshape
Converts data frames from wide to long and long to wide formats
DeducerRichOutput
Rich Output Display for Deducer
DeducerSpatial
Deducer for spatial data analysis
DeducerSpatial
Deducer for spatial data analysis
DeducerSurvival
Add Survival Dialogue to Deducer
DeducerText
Deducer GUI for Text Data
DeducerText
Deducer GUI for Text Data
deducorrect
Deductive Correction, Deductive Imputation, and Deterministic Correction
deductive
Data Correction and Imputation Using Deductive Methods
DeepBlueR
DeepBlueR
deepboost
Deep Boosting Ensemble Modeling
DeepCNV
Exploiting Normal Contamination to Infer Copy Number from Deep Sequencing
deeplearning
An Implementation of Deep Neural Network for Regression and Classification
deepnet
deep learning toolkit in R
deepnlp
Deep Learning Neural Network Models (RNN, CNN, etc) in NLP
DEEPR
Dirichlet-multinomial Evolutionary Event Profile Randomization (DEEPR) test
deepSNV
Detection of subclonal SNVs in deep sequencing data.
DEFFbinary
Compute the design effect for correlated binary data
DEFormats
Differential gene expression data formats converter
deformula
Integration of One-Dimensional Functions with Double Exponential Formulas
degenes
Detection of differentially expressed genes.
DEGraph
Two-sample tests on a graph
degreenet
Models for Skewed Count Distributions Relevant to Networks
DEGreport
Report of DEG analysis
DEGseq
Identify Differentially Expressed Genes from RNA-seq data
Delaporte
Statistical Functions for the Delaporte Distribution
deldir
Delaunay Triangulation and Dirichlet (Voronoi) Tessellation
delftfews
delftfews R extensions
DeLorean
Estimates Pseudotimes for Single Cell Expression Data
delt
Estimation of Multivariate Densities Using Adaptive Partitions
deltaGseg
deltaGseg
deltaPlotR
Identification of dichotomous differential item functioning (DIF) using Angoff's Delta Plot method
DeMAND
DeMAND
Demerelate
Functions to Calculate Relatedness on Diploid Genetic Data
DEMEtics
Evaluating the genetic differentiation between populations based on Gst and D values.
demi
Differential Expression from Multiple Indicators
deming
Deming, Thiel-Sen and Passing-Bablock Regression
DeMix
Deconvolution Models for Mixed Transcriptomes from Heterogeneous Tumor Samples
DeMixSampleData
'DeMix' Sample Data
demography
Forecasting mortality, fertility, migration and population data
demoKde
Kernel Density Estimation for Demonstration Purposes
demoniche
demoniche - spatial population dynamics
DEMOVA
DEvelopment (of Multi-Linear QSPR/QSAR) MOdels VAlidated using Test Set
dendextend
Extending R's Dendrogram Functionality
dendextendRcpp
Faster Dendrogram Manipulation using 'Rcpp'
dendroextras
Extra functions to cut, label and colour dendrogram clusters
dendrometeR
Analyzing Dendrometer Data
Dendrometry
Decipher Barr & Stroud FP-15 from STX Files
DendSer
Dendrogram seriation: ordering for visualisation
dendsort
Modular Leaf Ordering Methods for Dendrogram Nodes
DengueParmEst
Parameter estimates (and real-time prediction) of a single dengue outbreak
DengueRT
Parameter Estimates and Real-Time Prediction of a Single Dengue Outbreak
DengueRT
Parameter Estimates and Real-Time Prediction of a Single Dengue Outbreak
denoiseR
Regularized Low Rank Matrix Estimation
denovolyzeR
Statistical Analyses of De Novo Genetic Variants
denpro
Visualization of Multivariate Functions, Sets, and Data
densityClust
Clustering by Fast Search and Find of Density Peaks
Density.T.HoldOut
Density.T.HoldOut: Non-combinatorial T-estimation Hold-Out for density estimation
DensParcorr
Dens-Based Method for Partial Correlation Estimation in Large Scale Brain Networks
densratio
Density Ratio Estimation
denstrip
Density strips and other methods for compactly illustrating distributions
DEoptim
Global Optimization by Differential Evolution
DEoptimR
Differential Evolution Optimization in Pure R
DEoptimR
Differential Evolution Optimization in Pure R
depend.truncation
Statistical Inference for Parametric and Semiparametric Models Based on Dependently Truncated Data
DEploid
Deconvolute Mixed Genomes with Unknown Proportions
depmix
Dependent Mixture Models
depmix
Dependent Mixture Models
depmixS4
Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4
depmixS4
Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4
depth
Depth functions tools for multivariate analysis
depth.plot
Multivariate Analogy of Quantiles
depthproc
depthproc
DepthProc
Statistical Depth Functions for Multivariate Analysis
DepthProc
Statistical Depth Functions for Multivariate Analysis
depthTools
Depth Tools Package
dequer
Stacks, Queues, and 'Deques' for R
derfinder
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach
derfinderHelper
derfinder helper package
derfinderPlot
Plotting functions for derfinder
Deriv
Symbolic Differentiation
derivmkts
Functions and R Code to Accompany Derivatives Markets
desc
Manipulate DESCRIPTION Files
descomponer
Seasonal Adjustment by Frequency Analysis
descr
Descriptive Statistics
DescribeDisplay
An Interface to the DescribeDisplay GGobi Plugin
describer
Describe Data in R Using Common Descriptive Statistics
DescTools
Tools for Descriptive Statistics
deseasonalize
Optimal deseasonalization for geophysical time series using AR fitting
DESeq
Differential gene expression analysis based on the negative binomial distribution
DESeq2
Differential gene expression analysis based on the negative binomial distribution
designGG
Computational tool for designing genetical genomics experiments.
designGLMM
Finding Optimal Block Designs for a Generalised Linear Mixed Model
designmatch
Construction of Optimally Matched Samples for Randomized Experiments and Observational Studies that are Balanced and Representative by Design
desiR
Desirability Functions for Ranking, Selecting, and Integrating Data
desirability
Function Optimization and Ranking via Desirability Functions
desirability
Desirabiliy Function Optimization and Ranking
desire
Desirability functions in R
desire
Desirability functions
DESnowball
Bagging with Distance-based Regression for Differential Gene Expression Analyses
deSolve
Solvers for Initial Value Problems of Differential Equations (ODE, DAE, DDE)
deSolve
Solvers for Initial Value Problems of Differential Equations ('ODE', 'DAE', 'DDE')
DESP
Estimation of Diagonal Elements of Sparse Precision-Matrices
desplot
Plotting Field Plans for Agricultural Experiments
destiny
Creates diffusion maps
DEsubs
DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments
detect
Analyzing Wildlife Data with Detection Error
detect
Analyzing Wildlife Data with Detection Error
detector
Detect Data Containing Personally Identifiable Information
deTestSet
Testset for Differential Equations
deTestSet
Testset for Differential Equations
DetMCD
Implementation of the DetMCD Algorithm (Robust and Deterministic Estimation of Location and Scatter)
DetR
Suite of Deterministic and Robust Algorithms for Linear Regression
detrendeR
Start the detrendeR Graphical User Interface (GUI)
DetSel
A computer program to detect markers responding to selection
DetSel
A computer program to detect markers responding to selection
detzrcr
Compare Detrital Zircon Suites
devEMF
EMF Graphics Output Device
Devore7
Data sets from Devore's "Prob and Stat for Eng (7th ed)"
devRate
Quantify Relationship Between Developmental Rate and Temperature in Ectotherms
devtools
Tools to Make Developing R Packages Easier
DEXSeq
Inference of differential exon usage in RNA-Seq
dexus
DEXUS - Identifying Differential Expression in RNA-Seq Studies with Unknown Conditions or without Replicates
df2json
Convert a dataframe to JSON
dfcomb
Phase I/II Adaptive Dose-Finding Design for Combination Studies
dfcrm
Dose-finding by the continual reassessment method
dfdb
Access Data Tables in a SQLite Data Base as Pseudo-Dataframes
dfdb.RODBC
Access Data Tables in an RODBC Data Base as Pseudo-Dataframes
dfexplore
Explore data.frames by plotting NA and classes of each variable
DFIT
Differential Functioning of Items and Tests
dfmta
Phase I/II Adaptive Dose-Finding Design for MTA
dfoptim
Derivative-free Optimization
dfoptim
Derivative-Free Optimization
DFP
Gene Selection
dfphase1
Phase I Control Charts (with Emphasis on Distribution-Free Methods)
dfpk
A Bayesian Dose-Finding Design using Pharmacokinetics(PK) for Phase I Clinical Trials
dga
Capture-Recapture Estimation using Bayesian Model Averaging
dGAselID
Genetic Algorithm with Incomplete Dominance for Feature Selection
DGCA
Differential Gene Correlation Analysis
dggridR
Discrete Global Grids for R
dglars
Differential Geometric LARS (dgLARS) method
dglm
Double Generalized Linear Models
dgmb
Simulating Data for PLS Mode B Structural Models
dgof
Discrete Goodness-of-Fit Tests
dgof
Discrete Goodness-of-Fit Tests
DHARMa
Residual Diagnostics for Hierarchical (Multi-Level / Mixed) Regression Models
dhga
Differential Hub Gene Analysis
dhglm
Double Hierarchical Generalized Linear Models
dHSIC
Independence Testing via Hilbert Schmidt Independence Criterion
diagis
Diagnostic Plot and Multivariate Summary Statistics of Weighted Samples from Importance Sampling
DiagnosisMed
Diagnostic test accuracy evaluation for health professionals.
diagonals
Block Diagonal Extraction or Replacement
diagram
Functions for Visualising Simple Graphs (Networks), Plotting Flow Diagrams
diagram
Functions for visualising simple graphs (networks), plotting flow diagrams
DiagrammeR
Create Graph Diagrams and Flowcharts Using R
DiagrammeRsvg
Export DiagrammeR Graphviz Graphs as SVG
DiagTest3Grp
Diagnostic test summary measures for three ordinal groups
DiallelAnalysisR
Diallel Analysis with R
diaplt
Beads Summary Plot of Ranges
dice
Calculate probabilities of various dice-rolling events
DiceDesign
Designs of Computer Experiments
DiceEval
Construction and Evaluation of Metamodels
DiceKriging
Kriging Methods for Computer Experiments
DiceOptim
Kriging-Based Optimization for Computer Experiments
DiceView
Plot methods for computer experiments design and surrogate.
dichromat
Color Schemes for Dichromats
dichromat
Color Schemes for Dichromats
dicionariosIBGE
Dictionaries for reading microdata surveys from IBGE
DICOM
Import medical imaging data using the DICOM Standard
DidacticBoost
A Simple Implementation and Demonstration of Gradient Boosting
dielectric
Defines some physical constants and dielectric functions commonly used in optics, plasmonics.
DierckxSpline
R companion to "Curve and Surface Fitting with Splines"
diezeit
R Interface to the ZEIT ONLINE Content API
DIFboost
Detection of Differential Item Functioning (DIF) in Rasch Models by Boosting Techniques
Difdtl
Difference of Two Precision Matrices Estimation
DiffBind
Differential Binding Analysis of ChIP-Seq peak data
DiffCorr
Analyzing and Visualizing Differential Correlation Networks in Biological Data
diffdepprop
Calculates Confidence Intervals for two Dependent Proportions
diffEq
Functions from the book Solving Differential Equations in R
diffEq
Functions from the book Solving Differential Equations in R
diffeR
Metrics of Difference for Comparing Pairs of Maps
diffGeneAnalysis
Performs differential gene expression Analysis
diffHic
Differential Analyis of Hi-C Data
diffIRT
Diffusion IRT Models for Response and Response Time Data
DiffLogo
DiffLogo: A comparative visualisation of sequence motifs
diffloop
Differential DNA loop calling from ChIA-PET data
diffobj
Diffs for R Objects
diffr
Display Differences Between Two Files using Codediff Library
diffractometry
Baseline identification and peak decomposition for x-ray diffractograms
diffrprojects
Projects for Text Version Comparison and Analytics in R
diffrprojectswidget
Visualization for 'diffrprojects'
diffusionMap
Diffusion map
DiffusionRgqd
Inference and Analysis for Generalized Quadratic Diffusions
DiffusionRimp
Inference and Analysis for Diffusion Processes via Data Imputation and Method of Lines
DiffusionRjgqd
Inference and Analysis for Jump Generalized Quadratic Diffusions
diffusr
Network Diffusion Algorithms
DIFlasso
A Penalty Approach to Differential Item Functioning in Rasch Models
difNLR
Detection of Dichotomous Differential Item Functioning (DIF) by Non- Linear Regression Function
difR
Collection of Methods to Detect Dichotomous Differential Item Functioning (DIF)
DIFtree
Item Focused Trees for the Identification of Items in Differential Item Functioning
digest
Create Compact Hash Digests of R Objects
digest
Create cryptographic hash digests of R objects
diggit
Inference of Genetic Variants Driving Cellular Phenotypes
Digiroo2
An application programming interface for generating null models of social contacts based on individuals' space use
digitalPCR
Estimate Copy Number for Digital PCR
digitize
Use Data from Published Plots in R
digitize
digitize : a plot digitizer in R
dils
Data-Informed Link Strength. Combine multiple-relationship networks into a single weighted network. Impute (fill-in) missing network links.
DIME
DIME (Differential Identification using Mixture Ensemble)
dina
Bayesian Estimation of DINA Model
dinamic
DiNAMIC A Method To Analyze Recurrent DNA Copy Number Aberrations in Tumors
diptest
Hartigan's Dip Test Statistic for Unimodality - Corrected
DIRECT
Bayesian Clustering of Multivariate Data Under the Dirichlet-Process Prior
Directional
Directional Statistics
directlabels
Direct labels for multicolor plots in lattice or ggplot2
directlabels
Direct Labels for Multicolor Plots
Director
A dynamic visualization tool of multi-level data
directPA
Direction Analysis for Pathways and Kinases
DirectStandardisation
Adjusted Means and Proportions by Direct Standardisation
dirichlet
Dirichlet and Generalized Dirichlet Distribution functions
DirichletMultinomial
Dirichlet-Multinomial Mixture Model Machine Learning for Microbiome Data
DirichletReg
Dirichlet Regression in R
dirmult
Estimation in Dirichlet-Multinomial distribution.
dirt
soil science related functions
Disake
Discrete associated kernel estimators
discgolf
Discourse 'API' Client
disclap
Discrete Laplace Exponential Family
disclapmix
Discrete Laplace Mixture Inference using the EM Algorithm
DiscML
DiscML: An R package for estimating evolutionary rates of discrete characters using maximum likelihood
discretecdAlgorithm
Coordinate-Descent Algorithm for Discrete Data
DiscreteInverseWeibull
Discrete Inverse Weibull Distribution
DiscreteLaplace
Discrete Laplace Distributions
discreteMTP
Multiple testing procedures for discrete test statistics
discreteRV
Create and Manipulate Discrete Random Variables
DiscreteWeibull
Discrete Weibull Distributions (Type 1 and 3)
discretization
Data preprocessing, discretization for classification.
discrimARTs
Discrimination of Alternative Reproductive Tactics (ARTs).
DiscriMiner
Tools of the Trade for Discriminant Analysis
discSurv
Discrete Time Survival Analysis
diseasemapping
Modelling Spatial Variation in Disease Risk for Areal Data
diseasemapping
Modelling Spatial Variation in Disease Risk for Areal Data
diseasemappingDevel
Functions to compliment diseasemapping
DisimForMixed
Calculate Dissimilarity Matrix for Dataset with Mixed Attributes
diskImageR
A Pipeline to Analyze Resistance and Tolerance from Drug Disk Diffusion Assays
dismo
Species Distribution Modeling
dismo
Species Distribution Modeling
disp2D
2D Hausdorff and Simplex Dispersion Orderings
disparityfilter
Disparity Filter Algorithm for Weighted Networks
displayHTS
displayHTS
dispmod
Dispersion models
disposables
Create Disposable R Packages for Testing
dissUtils
Utilities for making pairwise comparisons of multivariate data
Distance
Distance Sampling Detection Function and Abundance Estimation
distance.sample.size
Calculates Study Size Required for Distance Sampling
DistatisR
DiSTATIS Three Way Metric Multidimensional Scaling
distcomp
Computations over Distributed Data without Aggregation
distdrawr
Download Occurrence Data of Vascular Plants in Germany from the FLORKART Database
distfree.cr
Distribution-free confidence region (distfree.cr)
distillery
Method Functions for Confidence Intervals and to Distill Information from an Object
distory
Distance Between Phylogenetic Histories
distr
Object Oriented Implementation of Distributions
distr
Object Oriented Implementation of Distributions
distrDoc
Documentation for 'distr' Family of R Packages
distrDoc
Documentation for 'distr' Family of R Packages
distrEllipse
S4 Classes for Elliptically Contoured Distributions
distrEllipse
S4 Classes for Elliptically Contoured Distributions
distrEx
Extensions of Package 'distr'
distrEx
Extensions of Package 'distr'
DistributionUtils
Distribution Utilities
DistributionUtils
Distribution Utilities
distrMod
Object Oriented Implementation of Probability Models
distrMod
Object Oriented Implementation of Probability Models
distrom
Distributed Multinomial Regression
distrRmetrics
Distribution Classes for Distributions from Rmetrics
distrRmetrics
Distribution Classes for Distributions from Rmetrics
distrSim
Simulation Classes Based on Package 'distr'
distrSim
Simulation Classes Based on Package 'distr'
distrTeach
Extensions of Package 'distr' for Teaching Stochastics/Statistics in Secondary School
distrTeach
Extensions of Package 'distr' for Teaching Stochastics/Statistics in Secondary School
distrTEst
Estimation and Testing Classes Based on Package 'distr'
distrTEst
Estimation and Testing Classes Based on Package 'distr'
disttree
Trees and Forests for Distributional Regression
divagis
Provides tools for quality checks of georeferenced plant species accessions.
DivE
Diversity Estimator
diveMove
Dive analysis and calibration
diveMove
Dive Analysis and Calibration
diverse
Diversity Measures for Complex Systems
diversitree
Comparative 'Phylogenetic' Analyses of Diversification
diveRsity
A Comprehensive, General Purpose Population Genetics Analysis Package
DiversityOccupancy
Building Diversity Models from Multiple Species Occupancy Models
DiversitySampler
Functions for re-sampling a community matrix to compute diversity indices at different sampling levels.
DivMelt
HRM Diversity Assay Analysis Tool
divo
Tools for Analysis of Diversity and Similarity in Biological Systems
dixon
Nearest Neighbour Contingency Table Analysis
DJL
Distance Measure Based Judgment and Learning
dkDNA
Diffusion Kernels on a Set of Genotypes
dks
The double Kolmogorov-Smirnov package for evaluating multiple testing procedures.
DLASSO
Implementation of Differentiable Lasso Penalty in Linear Models
dlm
Bayesian and Likelihood Analysis of Dynamic Linear Models
dlm
Bayesian and Likelihood Analysis of Dynamic Linear Models
dlmap
Detection Localization Mapping for QTL
dlmodeler
Generalized Dynamic Linear Modeler
DLMtool
Data-Limited Methods Toolkit
dlnm
Distributed Lag Non-Linear Models
dlrm
Dynamic Linear Regression Model
dlsem
Distributed-Lag Structural Equation Modelling
dlstats
Download Stats of R Packages
dma
Dynamic Model Averaging
dml
Distance Metric Learning in R
dmm
Dyadic Mixed Model for Pedigree Data
dMod
Dynamic Modeling and Parameter Estimation in ODE Models
DMR
Delete or Merge Regressors for linear model selection.
DMRcaller
Differentially Methylated Regions caller
DMRcate
Methylation array and sequencing spatial analysis methods
DMRforPairs
DMRforPairs: identifying Differentially Methylated Regions between unique samples using array based methylation profiles
DMRMark
DMR Detection by Non-Homogeneous Hidden Markov Model from Methylation Array Data
dmt
Dependency Modeling Toolkit
dmt
Dependency Modeling Toolkit
DMwR
Functions and data for "Data Mining with R"
DMwR2
Functions and Data for the Second Edition of "Data Mining with R"
dna
Differential Network Analysis
DNABarcodes
A tool for creating and analysing DNA barcodes used in Next Generation Sequencing multiplexing experiments
DNAcopy
DNA copy number data analysis
dnamatch
A procedure for large scale contamination search
DNAprofiles
DNA Profiling Evidence Analysis
DNAseqtest
Generating and Testing DNA Sequences
DNaseR
DNase I footprinting analysis of DNase-seq data
DNAshapeR
High-throughput prediction of DNA shape features
DNAtools
Tools for Analysing Forensic Genetic DNA Data
dnc
Dynamic Network Clustering
DnE
Distribution and Equation
dnet
Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology
dnet
Integrative Analysis of Omics Data in Terms of Network, Evolution and Ontology
DNMF
Discriminant Non-Negative Matrix Factorization
DOBAD
Analysis of Discretely Observed Linear Birth-and-Death(-and-Immigration) Markov Chains
doBy
Groupwise Statistics, LSmeans, Linear Contrasts, Utilities
docopt
Command-Line Interface Specification Language
docopulae
Optimal Designs for Copula Models
documair
Automatic Documentation for R packages
documair
Automatic Documentation for R packages
docxtractr
Extract Data Tables and Comments from Microsoft Word Documents
Dodge
Functions for Acceptance Sampling Ideas originated by H.F. Dodge
DODR
Detection of Differential Rhythmicity
DoE.base
Full Factorials, Orthogonal Arrays and Base Utilities for DoE Packages
DoE.wrapper
Wrapper package for design of experiments functionality
doFuture
Foreach Parallel Adaptor using the Future API of the 'future' Package
domainsignatures
Geneset enrichment based on InterPro domain signatures
doMC
Foreach Parallel Adaptor for 'parallel'
doMC
Foreach Parallel Adaptor for 'parallel'
Dominance
ADI (Average Dominance Index), Social Network Graphs with Dual Directions, and Music Notation Graph
domino
R Console Bindings for the 'Domino Command-Line Client'
doMPI
Foreach parallel adaptor for the Rmpi package
doParallel
Foreach Parallel Adaptor for the 'parallel' Package
doParallel
Foreach Parallel Adaptor for the 'parallel' Package
doppelgangR
Identify likely duplicate samples from genomic or meta-data
DOQTL
Genotyping and QTL Mapping in DO Mice
doRedis
Foreach parallel adapter for the rredis package
doRNG
Generic Reproducible Parallel Backend for foreach Loops
doRNG
Generic Reproducible Parallel Backend for foreach Loops
DOSE
Disease Ontology Semantic and Enrichment analysis
DoseFinding
Planning and Analyzing Dose Finding Experiments
doSMP
Foreach parallel adaptor for the revoIPC package
doSNOW
Foreach Parallel Adaptor for the 'snow' Package
doSNOW
Foreach Parallel Adaptor for the 'snow' Package
dosresmeta
Performing Multivariate Dose-Response Meta-Analysis
dostats
Compute Statistics Helper Functions
DOT
Render and Export DOT Graphs in R
DoTC
Distribution of Typicality Coefficients
dotCall64
Enhanced Foreign Function Interface Supporting Long Vectors
dotenv
Load Environment Variables from '.env'
dotwhisker
Dot-and-Whisker Plots of Regression Results
DoubleCone
Test against parametric regression function
DoubleExpSeq
Differential Exon Usage Test for RNA-Seq Data via Empirical Bayes Shrinkage of the Dispersion Parameter
DOvalidation
Local Linear Hazard Estimation with Do-Validated and Cross-Validated Bandwidths
Dowd
Functions Ported from 'MMR2' Toolbox Offered in Kevin Dowd's Book Measuring Market Risk
Dowd
Functions Ported from 'MMR2' Toolbox Offered in Kevin Dowd's Book Measuring Market Risk
downloader
Download Files over HTTP and HTTPS
downscale
Downscaling Species Occupancy
downscale
Downscaling Species Occupancy
downsize
A Tool to Downsize Large Workflows for Testing
dpa
Dynamic Path Approach
DPBBM
Dirichlet Process Beta-Binomial Mixture
dpcR
Digital PCR Analysis
dpeaqms
Differential Protein Expression Analysis using Quantitative Mass Spectrometry Data (dpeaqms)
dpglasso
Primal Graphical Lasso
dplR
Dendrochronology Program Library in R
dplR
Dendrochronology Program Library in R
dplRCon
Concordance for Dendroclimatology
dplyr
A Grammar of Data Manipulation
dpmixsim
Dirichlet Process Mixture model simulation for clustering and image segmentation
dpmixsim
Dirichlet Process Mixture model simulation for clustering and image segmentation
dpmr
Data Package Manager for R
DPpackage
Bayesian nonparametric modeling in R
dprep
Data Pre-Processing and Visualization Functions for Classification
dr
Methods for Dimension Reduction for Regression
dr
Methods for Dimension Reduction for Regression
drat
Drat R Archive Template
drawExpression
Visualising R syntax through graphics
drawExpression
Visualising R syntax through graphics
DRaWR
Discriminative Random Walk with Restart
DrBats
Data Representation: Bayesian Approach That's Sparse
drc
Analysis of Dose-Response Curves
dream
DiffeRential Evolution Adaptive Metropolis
DREGAR
Regularized Estimation of Dynamic Linear Regression in the Presence of Autocorrelated Residuals (DREGAR)
drfit
Dose-Response Data Evaluation
drgee
Doubly Robust Generalized Estimating Equations
DrillR
R Driver for Apache Drill
DRIMSeq
Differential splicing and sQTL analyses with Dirichlet-multinomial model in RNA-Seq
DRIP
Discontinuous Regression and Image Processing
DriverNet
Drivernet: uncovering somatic driver mutations modulating transcriptional networks in cancer
drLumi
Multiplex Immunoassays Data Analysis
drm
Regression and association models for repeated categorical data
drmdel
Dual Empirical Likelihood Inference under Density Ratio Models in the Presence of Multiple Samples
dropR
Analyze Drop Out of an Experiment or Survey
drought
Tools for Drought Modeling and Assessment
DRR
Dimensionality Reduction via Regression
drsmooth
Dose-Response Modeling with Smoothing Splines
DrugClust
Implementation of a Machine Learning Framework for Predicting Drugs Side Effects
DrugVsDisease
Comparison of disease and drug profiles using Gene set Enrichment Analysis
ds
Descriptive Statistics
dsample
Discretization-Based Direct Random Sample Generation
dsample
Discretization-Based Direct Random Sample Generation
DSBayes
Bayesian subgroup analysis in clinical trials
dse
Dynamic Systems Estimation (Time Series Package)
dse
Dynamic Systems Estimation (Time Series Package)
dse1
DSE (unbundled transition package).
dse2
DSE (unbundled transition package).
dSimer
Integration of Disease Similarity Methods
dsinr
Functions and datasets for the book "Data Science in R"
DSL
Distributed Storage and List
DSL
Distributed Storage and List
dslice
Dynamic Slicing
dsm
Density Surface Modelling of Distance Sampling Data
dsmodels
A Language to Facilitate the Creation and Visualization of Two- Dimensional Dynamical Systems
DSpat
Spatial Modelling for Distance Sampling Data
DSS
Dispersion shrinakge for sequencing data.
DSsim
Distance Sampling Simulations
dst
Using Dempster-Shafer Theory
DstarM
Analyze Two Choice Reaction Time Data with the D*M Method
DStree
Recursive Partitioning for Discrete-Time Survival Trees
DSviaDRM
Exploring Disease Similarity in Terms of Dysfunctional Regulatory Mechanisms
DT
A Wrapper of the JavaScript Library 'DataTables'
DTA
Dynamic Transcriptome Analysis
dtables
Simplifying Descriptive Frequencies and Statistics
DTComPair
Comparison of Binary Diagnostic Tests in a Paired Study Design
DTDA
Doubly truncated data analysis
dti
Analysis of Diffusion Weighted Imaging (DWI) Data
DTK
Dunnett-Tukey-Kramer Pairwise Multiple Comparison Test Adjusted for Unequal Variances and Unequal Sample Sizes
DTMCPack
Suite of functions related to discrete-time discrete-state Markov Chains
dtplyr
Data Table Back-End for 'dplyr'
DTR
Estimation and Comparison of Dynamic Treatment Regimes
DTRlearn
Learning Algorithms for Dynamic Treatment Regimes
DTRreg
DTR Estimation and Inference via G-Estimation, Dynamic WOLS, and Q-Learning
dtt
Discrete Trigonometric Transforms
dtw
Dynamic time warping algorithms
dtw
Dynamic Time Warping Algorithms
dtwclust
Time Series Clustering Along with Optimizations for the Dynamic Time Warping Distance
dtwSat
Time-Weighted Dynamic Time Warping for Satellite Image Time Series Analysis
dualKS
Dual KS Discriminant Analysis and Classification
dualScale
Dual Scaling Analysis of Multiple Choice Data
dummies
Create dummy/indicator variables flexibly and efficiently
dummy
A dummy package to ask R-Forge to install packages that I need
dummy
Automatic Creation of Dummies with Support for Predictive Modeling
DunnettTests
Software implementation of step-down and step-up Dunnett test procedures
dunn.test
Dunn's Test of Multiple Comparisons Using Rank Sums
DupChecker
a package for checking high-throughput genomic data redundancy in meta-analysis
dupiR
Bayesian inference from count data using discrete uniform priors
dupRadar
Assessment of duplication rates in RNA-Seq datasets
dvfBm
Discrete variations of a fractional Brownian motion
DVHmetrics
Analyze Dose-Volume Histograms and Check Constraints
dvn
Access to Dataverse 3 APIs
DWD
DWD implementation based on A IPM SOCP solver
DWreg
Parametric Regression for Discrete Response
dyebias
The GASSCO method for correcting for slide-dependent gene-specific dye bias
dygraphs
Interface to 'Dygraphs' Interactive Time Series Charting Library
DYM
Did You Mean?
dyn
Time Series Regression
DynamicDistribution
Dynamically visualized probability distributions and their moments
dynamicGraph
dynamicGraph
dynamicTreeCut
Methods for Detection of Clusters in Hierarchical Clustering Dendrograms
dynatopmodel
Implementation of the Dynamic TOPMODEL Hydrological Model
dynaTree
Dynamic Trees for Learning and Design
dynBiplotGUI
Full Interactive GUI for Dynamic Biplot in R
DynClust
Denoising and clustering for dynamical image sequence (2D or 3D)+T
dynCorr
Dynamic Correlation Package
DynDoc
Dynamic document tools
dynetNLAResistance
Resisting Neighbor Label Attack in a Dynamic Network
dynia
Fit Dynamic Intervention Model
dynlm
Dynamic Linear Regression
DynNom
Dynamic Nomograms for Linear, Generalized Linear and Proportional Hazard Models
dynOmics
Fast Fourier Transform to Identify Associations Between Time Course Omics Data
dynpanel
Dynamic Panel Data Models
dynpred
Companion Package to "Dynamic Prediction in Clinical Survival Analysis"
dynr
Dynamic Modeling in R
dynRB
Dynamic Range Boxes
dynsim
Dynamic Simulations of Autoregressive Relationships
dynsurv
Dynamic Models for Survival Data
DynTxRegime
Methods for Estimating Dynamic Treatment Regimes
DynTxRegime
Methods for Estimating Dynamic Treatment Regimes
DySeq
Functions for Dyadic Sequence Analyses
e1071
Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien
e1071
Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien
eaf
Plots of the Empirical Attainment Function
eAnalytics
Dynamic Web-Based Analytics for the Energy Industry
earlywarnings
Early Warning Signals Toolbox for Detecting Critical Transitions in Timeseries
earlywarnings
Early Warning Signals Toolbox for Detecting Critical Transitions in Timeseries
earth
Multivariate Adaptive Regression Splines
earthmovdist
Wrapper to the Emd-L1 library by Haibin Ling and Kazunori Okada
earthtones
Derive a Color Palette from a Particular Location on Earth
EasyABC
Efficient Approximate Bayesian Computation Sampling Schemes
EasyABC
Efficient Approximate Bayesian Computation Sampling Schemes
easyanova
Analysis of variance and other important complementary analyzes
easydb
Generic S3 Classes for Simple Database Interfaces
easyformatr
Tools for Building R Formats
EasyHTMLReport
EasyHTMLReport
EasyMARK
Utility functions for working with mark-recapture data.
easynls
Easy nonlinear model
easypackages
Easy Loading and Installing of Packages
easypower
Sample Size Estimation for Experimental Designs
easyPubMed
Search and Retrieve Scientific Publication Records from Pubmed
EasyqpcR
EasyqpcR for low-throughput real-time quantitative PCR data analysis
easyreg
Easy Regression
easyRNASeq
Count summarization and normalization for RNA-Seq data
easyrodbcaccess
Simple Database Interface for SQLite, MySQL and MS Access
easyrodbcexcel
Simple database interface for RODBC Excel.
easyrodbcmysql
Simple Database Interface for MySQL
EasyStrata
Evaluation of stratified genome-wide association meta-analysis results
easyVerification
Ensemble Forecast Verification for Large Data Sets
eat
eat
eatData
eatData
eatDesign
eatDesign
eatDev
eatDev
eatGet
eatGet
eatModel
eatModel
eatPrep
Prepare Data for IRT Analyses
eatRep
eatRep
eatRest
eatRest
eatTools
eatTools
eatTrend
Estimate National Trends in International Large-Scale Assessments
eba
Elimination-by-Aspects Models
ebal
Entropy reweighting to create balanced samples
EBarrays
Unified Approach for Simultaneous Gene Clustering and Differential Expression Identification
EBASS
Sample Size Calculation Method for Cost-Effectiveness Studies Based on Expected Value of Perfect Information
EbayesThresh
Empirical Bayes Thresholding and Related Methods
EBcoexpress
EBcoexpress for Differential Co-Expression Analysis
ebdbNet
Empirical Bayes Estimation of Dynamic Bayesian Networks
EBEN
Empirical Bayesian Elastic Net
ebGenotyping
Genotyping and SNP Detection using Next Generation Sequencing Data
EBglmnet
Empirical Bayesian Lasso and Elastic Net Methods for Generalized Linear Models
EBImage
Image processing and analysis toolbox for R
EBImage
DUMMY DUMMY DUMMY
ebimetagenomics
EBI Metagenomics Portal
ebimetagenomics
EBI Metagenomics Portal
EBMAforecast
Ensemble BMA Forecasting
EBS
Exact Bayesian Segmentation
EBS
Exact Bayesian Segmentation
EBSEA
Exon Based Strategy for Expression Analysis of genes
EBSeq
An R package for gene and isoform differential expression analysis of RNA-seq data
EBSeqHMM
Bayesian analysis for identifying gene or isoform expression changes in ordered RNA-seq experiments
ebSNP
Genotyping and SNP calling using single-sample next generation sequencing data
ecb
Programmatic Access to the European Central Bank's Statistical Data Warehouse (SDW)
ECctmc
Simulation from Endpoint-Conditioned Continuous Time Markov Chains
ecd
Elliptic Distribution and Lambda Option Pricing Model
Ecdat
Data Sets for Econometrics
Ecdat
Data Sets for Econometrics
ecdfHT
Empirical CDF for Heavy Tailed Data
ecespa
Functions for Spatial Point Pattern Analysis
Ecfun
Functions for Ecdat
Ecfun
Functions for Ecdat
ECharts2Shiny
Embedding Interactive Charts Generated with ECharts Library into Shiny Applications
ecipex
Efficient calculation of fine structure isotope patterns via Fourier transforms of simplex-based elemental models
ecm
Build Error Correction Models
eco
Ecological Inference in 2x2 Tables
ecodist
Dissimilarity-based functions for ecological analysis
ecoengine
Programmatic Interface to the API Serving UC Berkeley's Natural History Data
EcoGenetics
Spatial Analysis of Phenotypic, Genotypic and Environmental Data
EcoHydRology
A community modeling foundation for Eco-Hydrology.
ecolitk
Meta-data and tools for E. coli
ecolMod
"A practical guide to ecological modelling - using R as a simulation platform"
ecolMod
"A Practical Guide to Ecological Modelling - Using R as a Simulation Platform"
ecomodtools
Ecological Modelling Toolbox
EconDemand
General Analysis of Various Economics Demand Systems
ecoPD
Ecologically-informed phylodiversity metrics
ecoreg
Ecological Regression using Aggregate and Individual Data
ecoretriever
R Interface to the EcoData Retriever
ecosim
Toolbox for Aquatic Ecosystem Modeling
EcoSimR
Null Model Analysis for Ecological Data
ECOSolveR
Embedded Conic Solver in R
ecospace
Simulating Community Assembly and Ecological Diversification Using Ecospace Frameworks
ecospat
Spatial Ecology Miscellaneous Methods
ecotoxicology
Methods for Ecotoxicology
ecotoxicology
Methods for Ecotoxicology
EcoTroph
EcoTroph R package
ecoval
Procedures for Ecological Assessment of Surface Waters
EcoVirtual
Simulation of Ecological Models
ecp
Non-Parametric Multiple Change-Point Analysis of Multivariate Data
ECPaysage
A set of R resources to teach landscape ecology, landscape analysis and spatial statistics
ecr
Evolutionary Computing in R
edarf
Exploratory Data Analysis using Random Forests
EDASeq
Exploratory Data Analysis and Normalization for RNA-Seq
edcc
Economic Design of Control Charts
edci
Edge Detection and Clustering in Images
edd
expression density diagnostics
EDDA
Experimental Design in Differential Abundance analysis
edeaR
Exploratory and Descriptive Event-Based Data Analysis
edeR
Email Data Extraction Using R
edesign
Maximum Entropy Sampling
edf
Read Data from European Data Format (EDF and EDF+) Files
EDFIR
Estimating Discrimination Factors
edfReader
Reading EDF(+) and BDF(+) Files
edfun
Creating Empirical Distribution Functions
edgar
Platform for EDGAR Filing Management
edge
Extraction of Differential Gene Expression
edgebundleR
Circle Plot with Bundled Edges
edgeCorr
Spatial Edge Correction
edgeR
Empirical Analysis of Digital Gene Expression Data in R
edgeRun
More Powerful Unconditional Testing of Negative Binomial Means for Digital Gene Expression Data
EDISON
Network Reconstruction and Changepoint Detection
EditImputeCont
Simultaneous Edit-Imputation for Continuous Microdata
editrules
Parsing, Applying, and Manipulating Data Cleaning Rules
eDMA
Dynamic Model Averaging with Grid Search
edpcr
Performs Extended Digital PCR Analysis
EDR
Estimation of the Effective Dimension Reduction ('EDR') Space
edrGraphicalTools
Provides tools for dimension reduction methods
edstan
Stan Models for Item Response Theory
eechidna
Exploring Election and Census Highly Informative Data Nationally for Australia
eefAnalytics
Analytical Package for Analysing Education Trials
eefMLM
Analytical Package for Analysing Education Trials
eegAnalysis
Tools for analysis and classification of electroencephalography (EEG) data.
eegc
Engineering Evaluation by Gene Categorization (eegc)
eegkit
Toolkit for Electroencephalography Data
eegkitdata
Data for package eegkit
eel
Extended Empirical Likelihood
EEM
Read and Preprocess Fluorescence Excitation-Emission Matrix (EEM) Data
eemR
Tools for Pre-Processing Emission-Excitation-Matrix (EEM) Fluorescence Data
eeptools
Convenience Functions for Education Data
EFAutilities
Utility Functions for Exploratory Factor Analysis
EFDR
Wavelet-Based Enhanced FDR for Signal Detection in Noisy Images
effectFusion
Bayesian Effect Fusion for Categorical Predictors
EffectLiteR
Average and Conditional Effects
effects
Effect Displays for Linear, Generalized Linear, and Other Models
effects
Effect Displays for Linear, Generalized Linear, and Other Models
EffectsRelBaseline
Test changes of a grouped response relative to baseline.
EffectStars
Visualization of Categorical Response Models
EffectStars2
Effect Stars
EffectTreat
Prediction of Therapeutic Success
EfficientMaxEigenpair
Efficient Initials for Computing the Maximal Eigenpair
efflog
The Causal Effects for a Causal Loglinear Model
efflog
The causal effects for a causal loglinear model
effsize
Efficient Effect Size Computation
efreadr
Read European Fluxes CSV Files
EFS
Tool for Ensemble Feature Selection
ega
Error Grid Analysis
EGAD
Extending guilt by association by degree
egcm
Engle-Granger Cointegration Models
eggCounts
Hierarchical Modelling of Faecal Egg Counts
egonet
Tool for ego-centric measures in Social Network Analysis
EGRET
Exploration and Graphics for RivEr Trends (EGRET)
EGRETci
Exploration and Graphics for RivEr Trends (EGRET) Confidence Intervals
EGSEA
Ensemble of Gene Set Enrichment Analyses
eha
Event History Analysis
eHOF
Extended HOF (Huisman-Olff-Fresco) Models
ei
Ecological Inference
EIAdata
R Wrapper for the Energy Information Administration (EIA) API
eiCompare
Compares EI, Goodman, RxC Estimates
eigeninv
Generates (dense) matrices that have a given set of eigenvalues
eigenmodel
Semiparametric factor and regression models for symmetric relational data
eigenprcomp
Computes confidence intervals for principal components
EILA
Efficient Inference of Local Ancestry
eiPack
eiPack: Ecological Inference and Higher-Dimension Data Management
eiR
Accelerated similarity searching of small molecules
eisa
Expression data analysis via the Iterative Signature Algorithm
eive
An algorithm for reducing errors-in-variable bias in simple linear regression
eiwild
Ecological Inference with individual and aggregate data
eiwild
Ecological Inference with individual and aggregate data
EL
Two-sample Empirical Likelihood
elasso
Enhanced Least Absolute Shrinkage and Selection Operator Regression Model
elastic
General Purpose Interface to 'Elasticsearch'
elasticIsing
Ising Network Estimation using Elastic Net and k-Fold Cross-Validation
elasticnet
Elastic-Net for Sparse Estimation and Sparse PCA
elasticsearchr
A Lightweight Interface for Interacting with Elasticsearch from R
ELBOW
ELBOW - Evaluating foLd change By the lOgit Way
elec
Collection of functions for statistical election audits
elec.strat
Functions for election audits using stratified random samples
electionsBR
R Functions to Download and Clean Brazilian Electoral Data
electricity
Electricity market models
electronics
Electronics
elementR
A Shiny Application for Reducing Elemental LA-ICPMS Data from Solid Structures
ElemStatLearn
Data Sets, Functions and Examples from the Book: "The Elements of Statistical Learning, Data Mining, Inference, and Prediction" by Trevor Hastie, Robert Tibshirani and Jerome Friedman
elexr
Load Associated Press Election Results with Elex
elhmc
Sampling from a Empirical Likelihood Bayesian Posterior of Parameters Using Hamiltonian Monte Carlo
elliplot
Ellipse Summary Plot of Quantiles
ellipse
Functions for drawing ellipses and ellipse-like confidence regions
elliptic
Elliptic Functions
ELMER
Inferring Regulatory Element Landscapes and Transcription Factor Networks Using Cancer Methylomes
elmNN
Implementation of ELM (Extreme Learning Machine ) algorithm for SLFN ( Single Hidden Layer Feedforward Neural Networks )
ELMR
Extreme Machine Learning (ELM)
EloChoice
Preference Rating for Visual Stimuli Based on Elo Ratings
EloRating
Animal Dominance Hierarchies by Elo Rating
elrm
Exact Logistic Regression via MCMC
elsa
Entropy-based Local indicator of Spatial Association
ElstonStewart
Elston-Stewart Algorithm
ELT
Experience Life Tables
ELYP
Empirical Likelihood Analysis for the Cox Model and Yang-Prentice (2005) Model
EMA
Easy Microarray Data Analysis
EMbC
Expectation-Maximization Binary Clustering
embryogrowth
Tools to Analyze the Thermal Reaction Norm of Embryo Growth
EMC
Evolutionary Monte Carlo (EMC) algorithm
EMCluster
EM Algorithm for Model-Based Clustering of Finite Mixture Gaussian Distribution
EMD
Empirical Mode Decomposition and Hilbert Spectral Analysis
emdbook
Support Functions and Data for "Ecological Models and Data"
emdi
Estimating and Mapping Disaggregated Indicators
emdist
Earth Mover's Distance
EMDomics
Earth Mover's Distance for Differential Analysis of Genomics Data
emg
Exponentially Modified Gaussian (EMG) Distribution
emil
Evaluation of Modeling without Information Leakage
emIRT
EM Algorithms for Estimating Item Response Theory Models
emissions
What the package does (short line)
EmiStatR
Estimation of Wastewater Emissions in Combined Sewer Systems
EMLasso
Fit (logistic) LASSO when there is missing data in the predictors
eMLEloglin
Fitting log-Linear Models in Sparse Contingency Tables
emma
Evolutionary model-based multiresponse approach
EMMAgeo
End-Member Modelling of Grain-Size Data
emme2
Read and Write to an EMME/2 databank
EMMIXcontrasts
Contrasts in mixed effects for EMMIX model with random effects.
EMMIXskew
The EM Algorithm and Skew Mixture Distribution
EMMIXuskew
Fitting Unrestricted Multivariate Skew t Mixture Models
EMMLi
A Maximum Likelihood Approach to the Analysis of Modularity
EMMREML
Fitting Mixed Models with Known Covariance Structures
emoa
Evolutionary Multiobjective Optimization Algorithms
emojifont
Emoji Fonts for using in R
emon
Tools for Environmental and Ecological Survey Design
emon
Tools for Environmental and Ecological Survey Design
emov
Eye Movement Analysis Package for Fixation and Saccade Detection
EMP
Expected Maximum Profit Classification Performance Measure
EmpiricalBrownsMethod
Uses Brown's method to combine p-values from dependent tests
EmpiricalCalibration
Routines for Performing Empirical Calibration of Observational Study Estimates
empiricalFDR.DESeq2
Simulation-Based False Discovery Rate in RNA-Seq
emplik
Empirical Likelihood Ratio for Censored/Truncated Data
emplik2
Empirical Likelihood Ratio Test for Two Samples with Censored Data
EMSaov
The Analysis of Variance with EMS
EMSC
Extended Multiplicative Signal Correction
EMT
Exact Multinomial Test: Goodness-of-Fit Test for Discrete Multivariate data
emulator
Bayesian emulation of computer programs
emuR
Main Package of the EMU Speech Database Management System
EMVC
Entropy Minimization over Variable Clusters (EMVC)
enaR
Tools for Ecological Network Analysis
ENCODExplorer
A compilation of ENCODE metadata
endogenous
Classical Simultaneous Equation Models
endogMNP
R Package for Fitting Multinomial Probit Models with Endogenous Selection
endorse
R Package for Analyzing Endorsement Experiments
endtoend
Transmissions and Receptions in an End to End Network
energy
E-Statistics: Multivariate Inference via the Energy of Data
energyr
Data Published by the United States Federal Energy Regulatory Commission
english
Translate integers into English
EngrExpt
Data sets from "Introductory Statistics for Engineering Experimentation"
EngrExpt
Data sets from "Introductory Statistics for Engineering Experimentation"
engsoccerdata
English and European Soccer Results 1871-2016
enigma
Client for the 'Enigma' 'API'
ENiRG
Ecological Niche in R and GRASS
ENMeval
Automated Runs and Evaluations of Ecological Niche Models
ENmisc
Neuwirth miscellaneous
ENmix
Data preprocessing and quality control for Illumina HumanMethylation450 and MethylationEPIC BeadChip
enpls
Ensemble Partial Least Squares Regression
EnQuireR
A package dedicated to questionnaires
EnQuireR
A package dedicated to questionnaires
enRich
An R Package for the Analysis of Multiple ChIP-Seq Data
EnrichedHeatmap
Making Enriched Heatmaps
EnrichmentBrowser
Seamless navigation through combined results of set-based and network-based enrichment analysis
enrichvs
Enrichment assessment of virtual screening approaches
enrichwith
Methods to Enrich R Objects with Extra Components
ensbiascoR
Resampling bias correction for large initial condition ensembles
ensembldb
Utilities to create and use an Ensembl based annotation database
EnsembleBase
Extensible Package for Parallel, Batch Training of Base Learners for Ensemble Modeling
ensembleBMA
Probabilistic Forecasting using Ensembles and Bayesian Model Averaging
EnsembleCV
Extensible Package for Cross-Validation-Based Integration of Base Learners
ensembleMOS
Ensemble Model Output Statistics
EnsemblePCReg
Extensible Package for Principal-Component-Regression-Based Heterogeneous Ensemble Meta-Learning
EnsemblePenReg
Extensible Classes and Methods for Penalized-Regression-Based Integration of Base Learners
ensembleR
Ensemble Models in R
ensemblVEP
R Interface to Ensembl Variant Effect Predictor
ensurer
Ensure Values at Runtime
entropart
Entropy Partitioning to Measure Diversity
entropy
Estimation of Entropy, Mutual Information and Related Quantities
EntropyEstimation
Estimation of Entropy and Related Quantities
EntropyExplorer
Tools for Exploring Differential Shannon Entropy, Differential Coefficient of Variation and Differential Expression
EnvCpt
Detection of Structural Changes in Climate and Environment Time Series
enveomics.R
Various R Functions from the Kostas Lab
enviGCMS
GC-MS Data Analysis for Environmental Science
enviPat
Isotope Pattern, Profile and Centroid Calculation for Mass Spectrometry
enviPick
Peak Picking for High Resolution Mass Spectrometry Data
envirem
Generation of ENVIREM Variables
EnviroStat
Statistical Analysis of Environmental Space-Time Processes
ENVISIONQuery
Retrieval from the ENVISION bioinformatics data portal into R
envlpaster
Enveloping the Aster Model
EnvNicheR
Niche Estimation
EnvStats
Package for Environmental Statistics, Including US EPA Guidance
epade
Easy Plots
epandist
Statistical Functions for the Censored and Uncensored Epanechnikov Distribution
epanetReader
Read Epanet Files into R
EPGLM
Gaussian Approximation of Bayesian Binary Regression Models
Epi
A Package for Statistical Analysis in Epidemiology
Epi
A Package for Statistical Analysis in Epidemiology
epibasix
Elementary Epidemiological Functions for Epidemiology and Biostatistics
EpiBayes
Implements Hierarchical Bayesian Models for Epidemiological Applications
EpiContactTrace
Epidemiological Tool for Contact Tracing
epiDisplay
Epidemiological Data Display Package
EpiDynamics
Dynamic Models in Epidemiology
EpiEstim
EpiEstim: a package to estimate time varying reproduction numbers from epidemic curves.
epifit
Flexible Modelling Functions for Epidemiological Data Analysis
epiG
DNA methylation and SNP calling for bisulfite sequencing data
epigenomix
Epigenetic and gene transcription data normalization and integration with mixture models
EpiModel
Mathematical Modeling of Infectious Disease
epinet
Epidemic/Network-Related Tools
epinetics
EpiNetics
epineticseq
EpiNeticSeq
epiR
Tools for the Analysis of Epidemiological Data
EPISbigRR
Generalized Ridge Regression for Analysis of Interaction Effects
episensr
Basic Sensitivity Analysis of Epidemiological Results
episheet
Rothman's Episheet
episplineDensity
Density Estimation with Soft Information by Exponential Epi-splines
epistasis
Detecting Epistatic Selection with Partially Observed Genotype Data
epitools
Epidemiology Tools
EpitopePrediction
Predict Binding Between Peptides and MHC Molecules
epivizr
R Interface to epiviz web app
epivizrData
Data Management API for epiviz interactive visualization app
epivizrServer
WebSocket server infrastructure for epivizr apps and packages
epivizrStandalone
Run Epiviz Interactive Genomic Data Visualization App within R
EpiWeek
Conversion Between Epidemiological Weeks and Calendar Dates
Eplot
Plotting longitudinal series
epoc
EPoC (Endogenous Perturbation analysis of Cancer)
epr
Easy polynomial regression
EQL
Extended-Quasi-Likelihood-Function (EQL)
eqs2lavaan
EQS Output Conversion to lavaan Functions
eqtl
Tools for analyzing eQTL experiments: A complementary to Karl Broman's 'qtl' package for genome-wide analysis
equate
Observed-Score Linking and Equating
equateIRT
Direct, Chain and Average Equating Coefficients with Standard Errors Using IRT Methods
equivalence
Provides Tests and Graphics for Assessing Tests of Equivalence
erah
Automated Spectral Deconvolution, Alignment, and Metabolite Identification in GC/MS-Based Untargeted Metabolomics
erboost
Nonparametric Multiple Expectile Regression via ER-Boost
erccdashboard
Assess Differential Gene Expression Experiments with ERCC Controls
erer
Empirical Research in Economics with R
ergm
Fit, Simulate and Diagnose Exponential-Family Models for Networks
ergm.count
Fit, Simulate and Diagnose Exponential-Family Models for Networks with Count Edges
ergm.ego
Fit, Simulate and Diagnose Exponential-Family Random Graph Models to Egocentrically Sampled Network Data
ergm.graphlets
ERG Modeling Based on Graphlet Properties
ergmharris
Local Health Department network data set
ergm.rank
Fit, Simulate and Diagnose Exponential-Family Models for Rank-Order Relational Data
ergm.userterms
User-specified terms for the statnet suite of packages
EricksenLeslie
numerical solution of Ericsken-Leslie equations for 1D liquid crystal cells
eRm
Extended Rasch Modeling
eRm
Extended Rasch Modeling
erma
epigenomic road map adventures
ERP
Significance Analysis of Event-Related Potentials Data
erp.easy
Event-Related Potential (ERP) Data Exploration Made Easy
erpR
Event-related potentials (ERP) analysis, graphics and utility functions
erpR
Event-related potentials (ERP) analysis, graphics and utility functions
errint
Build Error Intervals
errorizer
Function Errorizer
ES
Edge Selection
esaBcv
Estimate Number of Latent Factors and Factor Matrix for Factor Analysis
esaddle
Extended Empirical Saddlepoint Density Approximation
esc
Effect Size Computation for Meta Analysis
ESEA
ESEA: Discovering the Dysregulated Pathways based on Edge Set Enrichment Analysis
esetVis
Visualizations of expressionSet Bioconductor object
ESG
ESG - A package for asset projection
ESGtoolkit
Toolkit for the simulation of financial assets and interest rates models.
ESKNN
Ensemble of Subset of K-Nearest Neighbours Classifiers for Classification and Class Membership Probability Estimation
ESM
Ecological Specificity Measures
estatapi
R Interface to e-Stat API
EstCRM
Calibrating Parameters for the Samejima's Continuous IRT Model
EstHer
Estimation of Heritability in High Dimensional Sparse Linear Mixed Models using Variable Selection
estimability
Tools for Assessing Estimability of Linear Predictions
estimate
Estimate of Stromal and Immune Cells in Malignant Tumor Tissues from Expression Data
estout
Estimates Output
EstSimPDMP
Estimation and Simulation for PDMPs
etable
Easy Table
etanalysis
Analysis of Eye-tracker data
ETAS
Modeling Earthquake Data Using ETAS Model
etasFLP
Mixed FLP and ML Estimation of ETAS Space-Time Point Processes
ETC
Equivalence to control
etl
Extract-Transform-Load Framework for Medium Data
ETLUtils
Utility Functions to Execute Standard Extract/Transform/Load Operations (using Package 'ff') on Large Data
etm
Empirical Transition Matrix
etma
Epistasis Test in Meta-Analysis
etrunct
Computes Moments of Univariate Truncated t Distribution
etseed
Client for 'etcd', a 'Key-value' Database
eudysbiome
Cartesian plot and contingency test on 16S Microbial data
eulerian
eulerian: A package to find eulerian paths from graphs
eulerr
Area-Proportional Euler Diagrams
euroformix
Package for intepretation of quantitative DNA mixtures
euroMix
Calculations for DNA mixtures
euroMix
Calculations for DNA Mixtures
euroMixR
Calculations for DNA mixtures, only R code
europepmc
R Interface to the Europe PubMed Central RESTful Web Service
EurosarcBayes
Bayesian Single Arm Sample Size Calculation Software
eurostat
Tools for Eurostat Open Data
eva
Extreme Value Analysis with Goodness-of-Fit Testing
EvalEst
Dynamic Systems Estimation - Extensions
evaluate
Parsing and Evaluation Tools that Provide More Details than the Default
EvaluationMeasures
Collection of Model Evaluation Measure Functions
Evapotranspiration
Modelling Actual, Potential and Reference Crop Evapotranspiration
evclass
Evidential Distance-Based Classification
evclust
Evidential Clustering
EvCombR
Evidence Combination in R
evd
Functions for Extreme Value Distributions
evdbayes
Bayesian Analysis in Extreme Value Theory
eVenn
A Powerful Tool to Quickly Compare Huge Lists and Draw Venn Diagrams
event
Event History Procedures and Models
eventInterval
Sequential Event Interval Analysis
events
Store and manipulate event data
events
Store and manipulate event data
eventstudies
Event study and extreme event analysis
EventTree
Event Trees for Hazard and Risk Analysis
evidenceFactors
Reporting Tools for Sensitivity Analysis of Evidence Factors in Observational Studies
evir
Extreme Values in R
evir
Extreme Values in R
evmix
Extreme Value Mixture Modelling, Threshold Estimation and Boundary Corrected Kernel Density Estimation
evobiR
Comparative and Population Genetic Analyses
evolqg
Tools for Evolutionary Quantitative Genetics
evolvability
Calculation of Evolvability Parameters
Evomorph
Evolutionary Morphometric Simulation
evoper
Evolutionary Parameter Estimation for 'Repast Simphony' Models
EvoRAG
Evolutionary Rates Across Gradients
evt0
Mean of order p, peaks over random threshold Hill and high quantile estimates
evtree
Evolutionary Learning of Globally Optimal Trees
evtree
Evolutionary Learning of Globally Optimal Trees
EW
Edgeworth Expansion
ewc
Edge-Weighted Closeness
EWCE
Expression Weighted Celltype Enrichment
EWGoF
Goodness-of-Fit Tests for the Exponential and Two-Parameter Weibull Distributions
Exact
Unconditional Exact Test
exact2x2
Exact Conditional Tests and Confidence Intervals for 2x2 tables
exactci
Exact P-Values and Matching Confidence Intervals for Simple Discrete Parametric Cases
ExactCIdiff
Inductive Confidence Intervals for the difference between two proportions
exactLoglinTest
Monte Carlo Exact Tests for Log-linear models
exactmeta
Exact fixed effect meta analysis
ExactPath
Exact solution paths for regularized LASSO regressions with L_1 penalty
exactRankTests
Exact Distributions for Rank and Permutation Tests
ExactSampling
ExactSampling: risk evaluation using exact resampling methods for the k Nearest Neighbor algorithm.
exams
Automatic Generation of Exams in R
exams
Automatic Generation of Exams in R
ExceedanceTools
Confidence regions for exceedance sets and contour lines
excel.link
Convenient Data Exchange with Microsoft Excel
exCon
Interactive Exploration of Contour Data
excursions
Excursion Sets and Contour Credibility Regions for Random Fields
exec
Execute scripts in exec directory of packages
exif
Read EXIF Metadata from JPEGs
exifr
EXIF Image Data in R
ExiMiR
R functions for the normalization of Exiqon miRNA array data
ExLiebeRes
Exact Liebermann/Reshnikov and Bruhn-Suhr/Krumbholz plans
exomeCopy
Copy number variant detection from exome sequencing read depth
ExomeDepth
Calls Copy Number Variants from Targeted Sequence Data
exomePeak
exome-based anlaysis of MeRIP-Seq data: peak calling and differential analysis
exp2flux
Convert Gene EXPression Data to FBA FLUXes
expandFunctions
Feature Matrix Builder
expands
Expanding Ploidy and Allele-Frequency on Nested Subpopulations
ExpDE
Modular Differential Evolution for Experimenting with Operators
ExpDes
Experimental Designs package
ExpDes.pt
Pacote Experimental Designs (Portuguese)
ExpectedReturns
Computation of implied expected returns
expectile
Modelling of expectiles
expectreg
Expectile and Quantile Regression
experiment
experiment: R package for designing and analyzing randomized experiments
ExperimentHub
Client to access ExperimentHub resources
ExperimentHubData
Add resources to ExperimentHub
expert
Modeling without data using expert opinion
ExplainPrediction
Explanation of Predictions for Classification and Regression Models
explor
Interactive Interfaces for Results Exploration
explorase
GUI for exploratory data analysis of systems biology data
exploreR
Tools for Quickly Exploring Data
expm
Matrix Exponential
expoRkit
Expokit in R
ExPosition
Exploratory analysis with the singular value decomposition.
expoTree
Calculate density dependent likelihood of a phylogenetic tree
expp
Spatial analysis of extra-pair paternity
ExpressionAtlas
Download datasets from EMBL-EBI Expression Atlas
ExpressionView
Visualize biclusters identified in gene expression data
exprso
Rapid Implementation of Machine Learning Algorithms for Genomic Data
expsmooth
Data Sets from "Forecasting with Exponential Smoothing"
expss
Some Useful Functions from Spreadsheets and 'SPSS' Statistics
exptest
Tests for Exponentiality
exreport
Fast, Reliable and Elegant Reproducible Research
EXRQ
Extreme Regression of Quantiles
exsic
Convenience Functions for Botanists to Create Specimens Indices
ExtDist
Extending the Range of Functions for Probability Distributions
extendedForest
Breiman and Cutler's random forests for classification and regression
exteriorMatch
Constructs the Exterior Match from Two Matched Control Groups
extfunnel
Additional Funnel Plot Augmentations
extlasso
Maximum penalized likelihood estimation with extended lasso penalty
extraBinomial
Extra-binomial approach for pooled sequencing data
extracat
Categorical Data Analysis and Visualization
extraDistr
Additional Univariate and Multivariate Distributions
extrafont
Tools for using fonts
extrafontdb
Package for holding the database for the extrafont package
extraTrees
Extremely Randomized Trees (ExtraTrees) Method for Classification and Regression
ExtremalDep
Extremal Dependence Models
ExtremeBounds
Extreme Bounds Analysis (EBA)
extremefit
Estimation of Extreme Conditional Quantiles and Probabilities
extRemes
Extreme Value Analysis
extremeStat
Extreme Value Statistics and Quantile Estimation
extremevalues
Univariate Outlier Detection
extremogram
Estimation of Extreme Value Dependence for Time Series Data
extWeibQuant
Estimate Lower Extreme Quantile with the Censored Weibull MLE and Censored Weibull Mixture
eyelinker
Load Raw Data from Eyelink Eye Trackers
eyetracking
Eyetracking Helper Functions
eyetrackingR
Eye-Tracking Data Analysis
ez
Easy Analysis and Visualization of Factorial Experiments
EZ2
Modeling Human Response Times and Accuracy using the EZ/EZ2 Diffusion Model
ezec
Easy Interface to Effective Concentration Calculations
ezglm
selects significant non-additive interaction between two variables using fast GLM implementation.
ezknitr
Avoid the Typical Working Directory Pain When Using 'knitr'
ezsim
provide an easy to use framework to conduct simulation
ezsummary
Generate Data Summary in a Tidy Format
fabia
FABIA: Factor Analysis for Bicluster Acquisition
fACD
Autoregressive Conditional Duration Models in R
face
Fast Covariance Estimation for Sparse Functional Data
facopy
Feature-based association and gene-set enrichment for copy number alteration analysis in cancer
FacPad
Bayesian Sparse Factor Analysis model for the inference of pathways responsive to drug treatment
factDesign
Factorial designed microarray experiment analysis
FactMixtAnalysis
Factor Mixture Analysis with covariates
FACTMLE
Maximum Likelihood Factor Analysis
FactoClass
Combination of Factorial Methods and Cluster Analysis
factoextra
Extract and Visualize the Results of Multivariate Data Analyses
FactoMineR
Multivariate Exploratory Data Analysis and Data Mining
factorAnalytics
Factor Analytics
FactorAnalytics
Functions for performing factor analysis on financial time series
FactoRizationMachines
Machine Learning with Higher-Order Factorization Machines
factorplot
Graphical Presentation of Simple Contrasts
factorplot
factorplot
factorQR
Bayesian quantile regression factor models
factorstochvol
Bayesian Estimation of (Sparse) Latent Factor Stochastic Volatility Models
Factoshiny
Perform Factorial Analysis from 'FactoMineR' with a Shiny Application
FACTscorer
Scores the FACT and FACIT Family of Patient-Reported Outcome Measures
factualR
thin wrapper for the Factual.com server API
FADA
Variable Selection for Supervised Classification in High Dimension
FAdist
Distributions that are Sometimes Used in Hydrology
Fahrmeir
Data from the Book "Multivariate Statistical Modelling Based on Generalized Linear Models", First Edition, by Ludwig Fahrmeir and Gerhard Tutz
fail
File Abstraction Interface Layer (FAIL)
FAiR
Factor Analysis in R
faisalconjoint
Faisal Conjoint Model: A New Approach to Conjoint Analysis
fakeplace
Generate fake geographies
fakeR
Simulates Data from a Data Frame of Different Variable Types
falcon
Finding Allele-Specific Copy Number in Next-Generation Sequencing Data
falconx
Finding Allele-Specific Copy Number in Whole-Exome Sequencing Data
FamAgg
Pedigree Analysis and Familial Aggregation
fame
Interface for FAME Time Series Database
FamEvent
Family Age-at-Onset Data Simulation and Penetrance Estimation
Familias
Probabilities for Pedigrees Given DNA Data
FAMILY
A Convex Formulation for Modeling Interactions with Strong Heredity
FAmle
Maximum Likelihood and Bayesian Estimation of Univariate Probability Distributions
FAMT
Factor Analysis for Multiple Testing (FAMT) : simultaneous tests under dependence in high-dimensional data
fanc
Penalized Likelihood Factor Analysis via Nonconvex Penalty
fANCOVA
Nonparametric Analysis of Covariance
fancycut
A Fancy Version of 'base::cut'
fanovaGraph
Building Kriging Models from FANOVA Graphs
fanplot
Visualisation of Sequential Probability Distributions Using Fan Charts
FAOSTAT
Download Data from the FAOSTAT Database of the Food and Agricultural Organization (FAO) of the United Nations
faoutlier
Influential Case Detection Methods for Factor Analysis and Structural Equation Models
far
Modelization for Functional AutoRegressive Processes
faraway
Functions and Datasets for Books by Julian Faraway
farff
A Faster 'ARFF' File Reader and Writer
fArma
Rmetrics - Modelling ARMA Time Series Processes
fArma
ARMA Time Series Modelling
farms
FARMS - Factor Analysis for Robust Microarray Summarization
farsi
Translate integers into persian
fAsianOptions
Rmetrics - EBM and Asian Option Valuation
fAsianOptions
EBM and Asian Option Valuation
fAssets
Rmetrics - Analysing and Modelling Financial Assets
fAssets
Rmetrics - Analysing and Modelling Financial Assets
fassoc
VARIANCE COMPONENT BASED MULTI-MARKER ASSOCIATION TEST USING FAMILY AND UNRELATED DATA
fast
Implementation of the Fourier Amplitude Sensitivity Test (FAST)
fastAdaboost
a Fast Implementation of Adaboost
FastBandChol
Fast Estimation of a Covariance Matrix by Banding the Cholesky Factor
fastclime
A Fast Solver for Parameterized LP Problems, Constrained L1 Minimization Approach to Sparse Precision Matrix Estimation and Dantzig Selector
fastcluster
Fast Hierarchical Clustering Routines for R and Python
fastcmh
Significant Interval Discovery with Categorical Covariates
fastcox
Lasso and elastic-net penalized Cox's regression in high dimensions models using the cocktail algorithm
fastdigest
Fast, Low Memory-Footprint Digests of R Objects
fasteraster
Raster Image Processing and Vector Recognition
fastGHQuad
Fast Rcpp implementation of Gauss-Hermite quadrature
FastGP
Efficiently Using Gaussian Processes with Rcpp and RcppEigen
fastGraph
Fast Drawing and Shading of Graphs of Statistical Distributions
FastHCS
Robust Algorithm for Principal Component Analysis
fastHICA
Hierarchical Independent Component Analysis: a Multi-Scale Sparse Non-Orthogonal Data-Driven Basis
fastHorseshoe
The Elliptical Slice Sampler for Bayesian Horseshoe Regression
fastICA
FastICA Algorithms to perform ICA and Projection Pursuit
FastImputation
Learn from Training Data then Quickly Fill in Missing Data
FastKM
A Fast Multiple-Kernel Method Based on a Low-Rank Approximation
FastKNN
Fast k-Nearest Neighbors
fastLiquidAssociation
functions for genome-wide application of Liquid Association
fastLSU
Fast Linear Step Up Procedure of Benjamini–Hochberg FDR Method for Huge-Scale Testing Problems
fastM
Fast Computation of Multivariate M-estimators
fastmatch
Fast match() function
FastPCS
FastPCS Robust Fit of Multivariate Location and Scatter
fastpseudo
Fast Pseudo Observations
fastR
Foundations and Applications of Statistics Using R
fastR
Data sets and utilities for Foundations and Applications of Statistics by R Pruim
FastRCS
Fits the FastRCS Robust Multivariable Linear Regression Model
FastRWeb
Fast Interactive Framework for Web Scripting Using R
fastseg
fastseg - a fast segmentation algorithm
fastSOM
Fast Calculation of Spillover Measures
fasttime
Fast Utility Function for Time Parsing and Conversion
fat2Lpoly
Two-Locus Family-Based Association Test with Polytomic Outcome
FatTailsR
Kiener Distributions and Fat Tails in Finance
FaultTree
Fault Trees for Risk and Reliability Analysis
fauxpas
HTTP Error Helpers
favnums
A Dataset of Favourite Numbers
FAwR
Functions and Datasets for "Forest Analytics with R"
fBasics
Rmetrics - Markets and Basic Statistics
fBasics
Rmetrics - Markets and Basic Statistics
fbati
Gene by Environment Interaction and Conditional Gene Tests for Nuclear Families
FBFsearch
Algorithm for Searching the Space of Gaussian Directed Acyclic Graph Models Through Moment Fractional Bayes Factors
FBN
FISH Based Normalization and Copy Number inference of SNP microarray data
fBonds
Rmetrics - Pricing and Evaluating Bonds
fBonds
Bonds and Interest Rate Models
fbRads
Analyzing and Managing Facebook Ads from R
fbRanks
Association Football (Soccer) Ranking via Poisson Regression
fbroc
Fast Algorithms to Bootstrap Receiver Operating Characteristics Curves
fCCAC
functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasets
fcd
Fused Community Detection
fCertificates
fCertificates - Basics of Certificates and Structured Products Valuation
fCertificates
Basics of Certificates and Structured Products Valuation
FCGR
Fatigue Crack Growth in Reliability
fCI
f-divergence Cutoff Index for Differential Expression Analysis in Transcriptomics and Proteomics
fclust
Fuzzy Clustering
FCMapper
Fuzzy Cognitive Mapping
FCNN4R
Fast Compressed Neural Networks for R
fCopulae
Rmetrics - Bivariate Dependence Structures with Copulae
fCopulae
Rmetrics - Bivariate Dependence Structures with Copulae
fcros
A Method to Search for Differentially Expressed Genes and to Detect Recurrent Chromosomal Copy Number Aberrations
FD
Measuring functional diversity (FD) from multiple traits, and other tools for functional ecology
FD
Measuring functional diversity (FD) from multiple traits, and other tools for functional ecology
fda
Functional Data Analysis
fda
Functional Data Analysis
fdakma
Functional Data Analysis: K-Mean Alignment
fdaMixed
Functional data analysis in a mixed model framework
fdapace
Functional Data Analysis and Empirical Dynamics
fdaPDE
Functional Data Analysis and Partial Differential Equations; Statistical Analysis of Functional and Spatial Data, Based on Regression with Partial Differential Regularizations
fdasrvf
Elastic Functional Data Analysis
fdatest
Interval Testing Procedure for Functional Data
fda.usc
Functional Data Analysis and Utilities for Statistical Computing
FDboost
Boosting Functional Regression Models
FDboost
Boosting Functional Regression Models
fdcov
Analysis of Covariance Operators
FDGcopulas
Multivariate Dependence with FDG Copulas
fdnonpar
Methods for Multivariate or Functional Data
fdq
Forest Data Quality
fdrame
FDR adjustments of Microarray Experiments (FDR-AME)
fdrci
Permutation-Based FDR Point and Confidence Interval Estimation
fdrDiscreteNull
False Discovery Rate Procedure Under Discrete Null Distributions
FDRreg
False discovery rate regression
FDRsampsize
Compute Sample Size that Meets Requirements for Average Power and FDR
fdrtool
Estimation of (Local) False Discovery Rates and Higher Criticism
fds
Functional data sets
fdth
Frequency Distribution Tables, Histograms and Polygons
FeaLect
Scores Features for Feature Selection
feather
R Bindings to the Feather 'API'
feature
Local Inferential Feature Significance for Multivariate Kernel Density Estimation
FeatureHashing
Creates a Model Matrix via Feature Hashing with a Formula Interface
features
Feature Extraction for Discretely-Sampled Functional Data
fechner
Fechnerian Scaling of Discrete Object Sets
fEcofin
Economic and Financial Data Sets
fecR
Fishing Effort Calculator in R
FedData
Functions to Automate Downloading Geospatial Data Available from Several Federated Data Sources
federalregister
Client Package for the U.S. Federal Register API
FeedbackTS
Analysis of Feedback in Time Series
feedeR
Read RSS/Atom Feeds from R
FEM
Identification of Functional Epigenetic Modules
FENmlm
Fixed Effects Nonlinear Maximum Likelihood Models
fermicatsR
Fermi Large Area Telescope Catalogs
fExoticOptions
Exotic Option Valuation
fExoticOptions
Rmetrics - Pricing and Evaluating Exotic Option
fExpressCertificates
fExpressCertificates - Structured Products Valuation for ExpressCertificates/Autocallables
fExpressCertificates
fExpressCertificates - Structured Products Valuation for ExpressCertificates/Autocallables
fExtremes
Rmetrics - Modelling Extreme Events in Finance
fExtremes
Rmetrics - Extreme Financial Market Data
ff
memory-efficient storage of large data on disk and fast access functions
ffbase
Basic Statistical Functions for Package 'ff'
FFD
Freedom from Disease
FFD
Freedom from Disease
FField
Force field simulation for a set of points
ffmanova
Fifty-fifty MANOVA
ffpe
Quality assessment and control for FFPE microarray expression data
ffstream
Forgetting Factor Methods for Change Detection in Streaming Data
fftrees
Fast- and Frugal Tree Analysis
FFTrees
Generate, Visualise, and Compare Fast and Frugal Decision Trees
fftw
Fast FFT and DCT based on FFTW
fftwtools
Wrapper for FFTW3: Includes 1-D, Univariate and Multivariate, and 2-D Transform
fgac
Generalized Archimedean Copula
FGalgorithm
Flury and Gautschi algorithms
fGarch
Rmetrics - Autoregressive Conditional Heteroskedastic Modelling
fGarch
Rmetrics - Modelling Autoregressive Conditional Heteroskedasticity
FGM
Floating Grid Method
Fgmutils
Forest Growth Model Utilities
FGN
Fractional Gaussian Noise and power law decay time series model fitting
FGNet
Functional Gene Networks derived from biological enrichment analyses
fgof
Fast Goodness-of-fit Test
fgpt
Floating Grid Permutation Technique
fgpt
Floating Grid Permutation Technique
fgsea
Fast Gene Set Enrichment Analysis
FGSG
Feature Grouping and Selection Over an Undirected Graph
fgui
Function GUI
fheatmap
Fantastic Heatmap
FHtest
Tests for Right and Interval-Censored Survival Data Based on the Fleming-Harrington Class
FI
Provide functions for forest inventory calculations
FIACH
Retrospective Noise Control for fMRI
fICA
Classical, Reloaded and Adaptive FastICA Algorithms
fields
Tools for Spatial Data
FieldSim
Random Fields (and Bridges) Simulations
fiery
A Lightweight and Flexible Web Framework
fifer
A collection of miscellaneous functions.
fiftystater
Map Data to Visualize the Fifty U.S. States with Alaska and Hawaii Insets
filehash
Simple Key-Value Database
filehashSQLite
Simple key-value database using SQLite
filematrix
File-Backed Matrix Class with Convenient Read and Write Access
filenamer
Easy Management of File Names
files
Effective File Navigation from the R Console
fImport
Rmetrics - Importing Economic and Financial Data
fImport
Rmetrics - Economic and Financial Data Import
FinAna
Financial Analysis and Regression Diagnostic Analysis
financial
Solving financial problems in R
FinancialInstrument
Financial Instrument Model Infrastructure for R
FinancialInstrument
Financial Instrument Model Infrastructure for R
FinAsym
Classifies implicit trading activity from market quotes and computes the probability of informed trading
FinCal
Time Value of Money, Time Series Analysis and Computational Finance
fincov
Methods for estimating covariance matrices
FinCovRegularization
Covariance Matrix Estimation and Regularization for Finance
FindAllRoots
Find all root(s) of the equation and Find root(s) of the equation by dichotomy
FindIt
Finding Heterogeneous Treatment Effects
FindMinIC
Find Models with Minimum IC
FindMyFriends
Microbial Comparative Genomics in R
findpython
Python tools to find an acceptable python binary
findviews
A View Generator for Multidimensional Data
FinePop
Fine-Scale Population Analysis
fingerprint
Functions for Processing Binary Fingerprint Data
fingerprint
Functions to operate on binary fingerprint data
finiteruinprob
Computation of the probability of ruin within a finite time horizon
finreportr
Financial Data from U.S. Securities and Exchange Commission
FinTS
Companion to Tsay (2005) Analysis of Financial Time Series
FinTS
Companion to Tsay (2005) Analysis of Financial Time Series
FIRMAGene
FIRMAGene - differential splicing for Affymetrix Gene 1.0 ST
FISHalyseR
FISHalyseR a package for automated FISH quantification
FisherEM
The Fisher-EM algorithm
fisheyeR
Fisheye and Hyperbolic-space-alike Interactive Visualization Tools in R
fisheyeR
Fisheye and Hyperbolic-space-alike Interactive Visualization Tools in R
FisHiCal
Iterative FISH-based Calibration of Hi-C Data
fishkirkko2015
Dataset of Measurements of Fish Species at Kirkkojarvi Lake, Finland
fishkirkko2015
Dataset of Measurements of Fish Species at Kirkkojarvi Lake, Finland
fishmethods
Fishery Science Methods and Models in R
fishMod
Fits Poisson-Sum-of-Gammas GLMs, Tweedie GLMs, and Delta Log-Normal Models
fishmove
Prediction of Fish Movement Parameters
FIT
Transcriptomic Dynamics Models in Field Conditions
fit4NM
NONMEM platform
FitAR
Subset AR Model Fitting
FitARMA
FitARMA: Fit ARMA or ARIMA using fast MLE algorithm
fitbitScraper
Scrapes Data from Fitbit
fitcoach
Personalized Coach for Fitbit and R API
fitdc
Garmin FIT File Decoder
fitdistrplus
Help to Fit of a Parametric Distribution to Non-Censored or Censored Data
fitdistrplus
Help to Fit of a Parametric Distribution to Non-Censored or Censored Data
fitDRC
Fitting Density Ratio Classes
FitHiC
Confidence estimation for intra-chromosomal contact maps
fitmixst4
Fitting mixture of skew t distribution
fit.models
fit.models
fit.models
fit.models
fitob
General solvers for the general Black-Scholes (Fokker Planck) partial differential equation (PDE) in a multi-dimensional setting with main application in finance (option pricing).
fitplc
Fit Hydraulic Vulnerability Curves
FITSio
FITS (Flexible Image Transport System) Utilities
fitTetra
fitTetra is an R package for assigning tetraploid genotype scores
fixedTimeEvents
The Distribution of Distances Between Discrete Events in Fixed Time
FixSeqMTP
Fixed Sequence Multiple Testing Procedures
fizzbuzzR
Fizz Buzz Implementation
FKF
Fast Kalman Filter
FKF
Fast Kalman Filter
flacco
Feature-Based Landscape Analysis of Continuous and Constraint Optimization Problems
flagme
Analysis of Metabolomics GC/MS Data
flam
Fits Piecewise Constant Models with Data-Adaptive Knots
flan
FLuctuation ANalysis on Mutation Models
flare
Family of Lasso Regression
flars
Functional LARS
flashClust
Implementation of optimal hierarchical clustering
FLAssess
Generic classes and methods for stock assessment models
FLBEIA
Bio-Economic Impact Assessment of Management strategies using FLR
FLCore
Core package of FLR, fisheries modelling in R.
FLEDA
Exploratory Data Analysis for FLR
FLExamples
Example datasets for FLR manuals and tutorials
FlexBayes
Flexible Bayesian Inference
flexclust
Flexible Cluster Algorithms
flexCWM
Flexible Cluster-Weighted Modeling
flexdashboard
R Markdown Format for Flexible Dashboards
flexmix
Flexible Mixture Modeling
FlexParamCurve
Tools to Fit Flexible Parametric Curves
flexPM
Flexible Parametric Models for Censored and Truncated Data
flexrsurv
Flexible Relative Survival
flexsurv
Flexible Parametric Survival and Multi-State Models
flexsurv
Flexible parametric survival models
flightcallr
Classify Night Flight Calls Based on Acoustic Measurements
FLIM
Farewell’s Linear Increments Model
flip
Multivariate Permutation Tests
flipflop
Fast lasso-based isoform prediction as a flow problem
FLLat
Fused Lasso Latent Feature Model
flock
Process Synchronization Using File Locks
flock
Process Synchronization Using File Locks
flora
Tools for Interacting with the Brazilian Flora 2020
flowAI
Automatic and interactive quality control for flow cytometry data
flowBeads
flowBeads: Analysis of flow bead data
flowBin
Combining multitube flow cytometry data by binning
flowcatchR
Tools to analyze in vivo microscopy imaging data focused on tracking flowing blood cells
flowCHIC
Analyze flow cytometric data using histogram information
flowCL
Semantic labelling of flow cytometric cell populations
flowClean
flowClean
flowClust
Clustering for Flow Cytometry
flowCore
flowCore: Basic structures for flow cytometry data
flowCyBar
Analyze flow cytometric data using gate information
flowDensity
Sequential Flow Cytometry Data Gating
flowDiv
Cytometric Diversity Indices from 'FlowJo' Workspaces
flower
Tools for characterizing flowering traits
flowfield
Forecasts future values of a univariate time series.
flowFit
Estimate proliferation in cell-tracking dye studies
flowFlowJo
Tools for extracting information from a FlowJo workspace and working with the data in the flowCore paradigm.
flowFP
Fingerprinting for Flow Cytometry
flowMap
Mapping cell populations in flow cytometry data for cross-sample comparisons using the Friedman-Rafsky Test
flowMatch
Matching and meta-clustering in flow cytometry
flowMeans
Non-parametric Flow Cytometry Data Gating
flowMerge
Cluster Merging for Flow Cytometry Data
flowPeaks
An R package for flow data clustering
flowPhyto
Methods for Continuous Flow Cytometry
flowPloidy
Analyze flow cytometer data to determine sample ploidy
flowPlots
flowPlots: analysis plots and data class for gated flow cytometry data
flowQ
Quality control for flow cytometry
flowQB
Automated Quadratic Characterization of Flow Cytometer Instrument Sensitivity: Q, B and CV instrinsic calculations
flowr
Streamlining Design and Deployment of Complex Workflows
FlowRepositoryR
FlowRepository R Interface
flows
Flow Selection and Analysis
FlowScreen
Daily Streamflow Trend and Change Point Screening
FlowSOM
Using self-organizing maps for visualization and interpretation of cytometry data
flowStats
Statistical methods for the analysis of flow cytometry data
flowTrans
Parameter Optimization for Flow Cytometry Data Transformation
flowType
Phenotyping Flow Cytometry Assays
flowUtils
Utilities for flow cytometry
flowViz
Visualization for flow cytometry
flowVS
Variance stabilization in flow cytometry (and microarrays)
flowWorkspace
Infrastructure for representing and interacting with the gated cytometry
FLR
Fuzzy Logic Rule Classifier
flsa
Path algorithm for the general Fused Lasso Signal Approximator
FLSSS
Multithreaded Fixed Size Subset Sum with Bounded Error in Multidimensional Real Domain
Flury
Data Sets from Flury, 1997
flux
Flux rate calculation from dynamic closed chamber measurements
FLXSA
eXtended Survivor Analysis for FLR
fma
Data Sets from "Forecasting: Methods and Applications" by Makridakis, Wheelwright & Hyndman (1998)
fMarkovSwitching
R Package for Estimation, Simulation and Forecasting of a Univariate Markov Switching Model
fmcsR
Mismatch Tolerant Maximum Common Substructure Searching
FME
A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability and Monte Carlo Analysis
FME
A Flexible Modelling Environment for Inverse Modelling, Sensitivity, Identifiability and Monte Carlo Analysis
FMP
Filtered Monotonic Polynomial IRT Models
fmri
Analysis of fMRI Experiments
fmrs
Variable Selection in Finite Mixture of AFT Regression and FMR
fmsb
Functions for Medical Statistics Book with some Demographic Data
FMsmsnReg
Regression Models with Finite Mixtures of Skew Heavy-Tailed Errors
FMStable
Finite Moment Stable Distributions
fmt
Variance estimation of FMT method (Fully Moderated t-statistic)
fMultivar
Rmetrics - Analysing and Modeling Multivariate Financial Return Distributions
fMultivar
Rmetrics - Analysing and Modeling Multivariate Financial Return Distributions
FNN
Fast Nearest Neighbor Search Algorithms and Applications
fNonlinear
Nonlinear and Chaotic Time Series Modelling
fNonlinear
Rmetrics - Nonlinear and Chaotic Time Series Modelling
foba
greedy variable selection
focalCall
Detection of focal aberrations in DNA copy number data
fontBitstreamVera
Fonts with Bitstream Vera Fonts Licence
fontcm
Computer Modern font for use with extrafont package
fontLiberation
Liberation Fonts
fontquiver
Set of Installed Fonts
foodweb
Generating food webs
foodweb
visualisation and analysis of food web networks
fOptions
Rmetrics - Pricing and Evaluating Basic Options
fOptions
Rmetrics - Pricing and Evaluating Basic Options
ForAI
Forecasting with Artificial Intelligence
forams
Foraminifera and Community Ecology Analyses
forcats
Tools for Working with Categorical Variables (Factors)
foreach
Provides Foreach Looping Construct for R
foreach
Provides Foreach Looping Construct for R
ForeCA
Forecastable Component Analysis
forecast
Forecasting Functions for Time Series and Linear Models
ForecastCombinations
Forecast Combinations
forecastHybrid
Convenient Functions for Ensemble Time Series Forecasts
forecastSNSTS
Forecasting for Stationary and Non-Stationary Time Series
forecTheta
Forecasting Time Series by Theta Models
forega
Floating-Point Genetic Algorithms with Statistical Forecast Based Inheritance Operator
foreign
Read Data Stored by Minitab, S, SAS, SPSS, Stata, Systat, Weka, dBase, ...
forensic
Statistical Methods in Forensic Genetics
ForensicDocument
Quantification and evaluation tools for forensic document examiners
forensim
Statistical tools for the interpretation of forensic DNA mixtures
forensim
Statistical tools for the interpretation of forensic DNA mixtures
forestFloor
Visualizes Random Forests with Feature Contributions
forestFloor
Visualizes Random Forests with Feature Contributions
forestFloorStable
(Legacy version 1.5)Visualizes Random Forests with Feature Contributions
forestinventory
Design-Based Global and Small-Area Estimations for Multiphase Forest Inventories
forestmodel
Forest Plots from Regression Models
forestplot
Advanced Forest Plot Using 'grid' Graphics
ForImp
Imputation of Missing Values Through a Forward Imputation Algorithm
ForIT
Functions from the 2nd Italian Forest Inventory (INFC)
FormalSeries
Elementary arithemtic in formal series rings
formatR
Format R Code Automatically
formattable
Create 'Formattable' Data Structures
Formula
Extended Model Formulas
Formula
Extended Model Formulas
formula.tools
Utilities for Formulas, Expressions, Calls and Other Objects
formulr
Miscelaneous tools to handle formulas.
fortunes
R Fortunes
fortunes
R Fortunes
forward
Forward search
ForwardSearch
Forward Search using asymptotic theory
fossil
Palaeoecological and Palaeogeographical Analysis Tools
FourCSeq
Package analyse 4C sequencing data
fourierin
Computes Numeric Fourier Integrals
fourPNO
Bayesian 4 Parameter Item Response Model
FourScores
FourScores - A game for two players
fpa
Spatio-Temporal Fixation Pattern Analysis
fpc
Flexible Procedures for Clustering
fpca
Restricted MLE for Functional Principal Components Analysis
FPCA2D
Two Dimensional Functional Principal Component Analysis
fpCompare
Reliable Comparison of Floating Point Numbers
FPDclustering
PD-Clustering and Factor PD-Clustering
fpop
Segmentation using Optimal Partitioning and Function Pruning
fPortfolio
Rmetrics - Portfolio Selection and Optimization
fPortfolio
Rmetrics - Portfolio Selection and Optimization
fPortfolioBacktest
Rmetrics - Portfolio Backtesting
fpow
Computing the noncentrality parameter of the noncentral F distribution
fpp
Data for "Forecasting: principles and practice"
fptdApprox
Approximation of First-Passage-Time Densities for Diffusion Processes
fracdiff
Fractionally differenced ARIMA aka ARFIMA(p,d,q) models
fracprolif
Fraction Proliferation via a Quiescent Growth Model
fractal
Fractal Time Series Modeling and Analysis
fractal
Fractal Time Series Modeling and Analysis
fractaldim
Estimation of fractal dimensions
FractalParameterEstimation
Estimation of Parameters p and q for Randomized Sierpinski Carpet for [p-p-p-q]-Model
fractalrock
Generate fractal time series with non-normal returns distribution
FRACTION
Numeric number into fraction
fractional
Vulgar Fractions in R
fragilityindex
Fragility Index
Fragman
Fragment Analysis in R
frailtyHL
Frailty Models via H-likelihood
frailtypack
General Frailty Models: Shared, Joint and Nested Frailty Models with Prediction
frailtySurv
General Semiparametric Shared Frailty Model
frair
Tools for Functional Response Analysis
Frames2
Estimation in Dual Frame Surveys
franc
Detect the Language of Text
FRAPO
Financial Risk Modelling and Portfolio Optimisation with R
FRAPO
Financial Risk Modelling and Portfolio Optimisation with R
FRB
Fast and Robust Bootstrap
frbs
Fuzzy Rule-Based Systems for Classification and Regression Tasks
FRCC
Fast Regularized Canonical Correlation Analysis
FREddyPro
Post-Processing EddyPro Full Output File
freeknotsplines
Free-Knot Splines
freesortphi
Cramer's Phi Analysis of Freesort Data
FreeSortR
Free Sorting Data Analysis
freestats
Statistical algorithms used in common data mining course
freesurfer
Wrapper Functions for 'Freesurfer'
FREGAT
Family REGional Association Tests
fRegression
Rmetrics - Regression Based Decision and Prediction
fRegression
Rmetrics - Regression Based Decision and Prediction
FREQ
FREQ: Estimate population size from capture frequencies
freqdist
Frequency Distribution
freqdom
Frequency Domain Analysis for Multivariate Time Series
freqdom
Frequency Domain Analysis for Multivariate Time Series
freqMAP
Frequency Moving Average Plots (MAP) of Multinomial Data by a Continuous Covariate
freqparcoord
Novel Methods for Parallel Coordinates
FreqProf
Frequency Profiles Computing and Plotting
freqweights
Working with Frequency Tables
FRESA.CAD
Feature Selection Algorithms for Computer Aided Diagnosis
FrF2
Fractional Factorial Designs with 2-Level Factors
FrF2.catlg128
Catalogues of resolution IV 128 run 2-level fractional factorials up to 33 factors that do have 5-letter words
FRGEpistasis
Epistasis Analysis for Quantitative Traits by Functional Regression Model
frm
Regression Analysis of Fractional Responses
frma
Frozen RMA and Barcode
frmaTools
Frozen RMA Tools
frmhet
Regression Analysis of Fractional Responses Under Unobserved Heterogeneity
frmpd
Regression Analysis of Panel Fractional Responses
frmqa
The Generalized Hyperbolic Distribution, Related Distributions and Their Applications in Finance
fromo
Fast Robust Moments
frontier
Stochastic Frontier Analysis
frontier
Stochastic Frontier Analysis
frontiles
Partial Frontier Efficiency Analysis
FRSstats
FRS Statistics Group R Library
frt
Full Randomization Test
FSA
Simple Fisheries Stock Assessment Methods
FSAdata
Data to Support Fish Stock Assessment ('FSA') Package
fscaret
Automated Feature Selection from 'caret'
FSelector
Selecting Attributes
FSelector
Selecting attributes
fsia
Import and Analysis of OMR Data from FormScanner
FSim
A package to search functionally similar genes
FSInteract
Fast Searches for Interactions
fslr
Wrapper Functions for FSL ('FMRIB' Software Library) from Functional MRI of the Brain ('FMRIB')
fso
Fuzzy Set Ordination
fSRM
Social Relations Analyses with Roles ("Family SRM")
FTICRMS
Programs for Analyzing Fourier Transform-Ion Cyclotron Resonance Mass Spectrometry Data
ftnonpar
Features and Strings for Nonparametric Regression
fTrading
Technical Trading Analysis
fTrading
Rmetrics - Trading and Rebalancing Financial Instruments
ftree
Fault Trees and Event Trees for Risk and Reliability Analysis
FTRLProximal
FTRL Proximal Implementation for Elastic Net Regression
fts
R interface to tslib (a time series library in c++)
ftsa
Functional Time Series Analysis
ftsspec
Spectral Density Estimation and Comparison for Functional Time Series
fueleconomy
EPA fuel economy data
fugeR
FUzzy GEnetic, a machine learning algorithm to construct prediction model based on fuzzy logic.
fullexampledata
Activated Region Fitting, fMRI data analysis (3D), additional dataset.
fullfact
Full Factorial Breeding Analysis
fulltext
Full Text of 'Scholarly' Articles Across Many Data Sources
fun
Use R for Fun
fun
Use R for Fun
funcheck
OBSOLETE: Run tests, where possible, on named optimization problem file.
FunChIP
Clustering and Alignment of ChIP-Seq peaks based on their shapes
FunChisq
Chi-Square and Exact Tests for Non-Parametric Functional Dependencies
FunciSNP
Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs
FunCluster
Functional Profiling of Microarray Expression Data
Funclustering
A package for functional data clustering.
Funclustering
A package for functional data clustering.
FuncMap
Hive Plots of R Package Function Calls
funcreg
Functional Regression Estimation
functional
Curry, Compose, and other higher-order functions
functional
Curry, Compose, and other higher-order functions
FunctionalNetworks
An algorithm for gene and gene set network inference
functools
Functional Programming in R
funcy
Functional Clustering Algorithms
funData
An S4 Class for Functional Data
funFEM
Clustering in the Discriminative Functional Subspace
fungible
Fungible Coefficients and Monte Carlo Functions
funHDDC
Model-based clustering in group-specific functional subspaces
fUnitRoots
Trends and Unit Roots
fUnitRoots
Rmetrics - Modelling Trends and Unit Roots
funModeling
Learn Data Science Through the "Data Science Live Book"
funphylocom
Functional traits, phylogenies, communities, simulations
funr
Simple Utility Providing Terminal Access to all R Functions
funrar
Functional Rarity Indices Computation
funreg
Functional Regression for Irregularly Timed Data
FUNTA
Functional Tangential Angle Pseudo-Depth
funtimes
Functions for Time Series Analysis
furniture
Furniture for Applied Quantitative Researchers
fuse
Framework for Understanding Structural Errors (FUSE)
FuseBox
Combining Classifiers
fusedanova
Fused-ANOVA
fusedanova2
Fused-ANOVA
FusedPCA
Community Detection via Fused Principal Component Analysis
futile.any
A Tiny Utility Providing Polymorphic Operations
futile.logger
A Logging Utility for R
futile.matrix
Random Matrix Generation and Manipulation
futile.options
Futile options management
futile.paradigm
A framework for working in a functional programming paradigm in R
FUtils
Felix's favorite functions
future
A Future API for R
future.BatchJobs
A Future for BatchJobs
futureheatwaves
Find, Characterize, and Explore Heat Waves in Climate Projections
fuzzr
Fuzz-Test R Functions
FuzzyAHP
(Fuzzy) AHP Calculation
fuzzyFDR
Exact calculation of fuzzy decision rules for multiple testing
fuzzyforest
Fuzzy Forests
fuzzyjoin
Join Tables Together on Inexact Matching
FuzzyLP
Fuzzy Linear Programming
FuzzyMCDM
Multi-Criteria Decision Making Methods for Fuzzy Data
FuzzyNumbers
Tools to deal with fuzzy numbers in R
FuzzyNumbers
Tools to Deal with Fuzzy Numbers
Fuzzy.p.value
Computing Fuzzy p-Value
FuzzyR
Fuzzy Logic Toolkit for R
fuzzyRankTests
Fuzzy Rank Tests and Confidence Intervals
fuzzySim
Fuzzy similarity in species distributions
FuzzyStatProb
Fuzzy Stationary Probabilities from a Sequence of Observations of an Unknown Markov Chain
FuzzyToolkitUoN
Type 1 Fuzzy Logic Toolkit
fwdmsa
Forward search for Mokken scale analysis
FWDselect
Selecting Variables in Regression Models
fwi.fbp
Fire Weather Index System and Fire Behaviour Prediction System Calculations
fwi.fbp
Fire Weather Index System and Fire Behaviour Prediction System Calculations
fwsim
Fisher-Wright Population Simulation
fxregime
Exchange Rate Regime Analysis
fxregime
Exchange Rate Regime Analysis
G1DBN
A package performing Dynamic Bayesian Network inference.
g2f
Find and Fill Gaps in Metabolic Networks
G2Sd
Grain-size Statistics and Description of Sediment
G2Sd
Grain-Size Statistics and Description of Sediment
g4n
graph for networks
GA
Genetic Algorithms
GA4Stratification
A genetic algorithm approach to determine stratum boundaries and sample sizes of each stratum in stratified sampling
GAabbreviate
Abbreviating Items Measures using Genetic Algorithms
GABi
Framework for Generalized Subspace Pattern Mining
GAD
GAD: Analysis of variance from general principles
gada
Genome Alteration Detection Algorithm (GADA)
GaDiFPT
First Passage Time Simulation for Gaussian Diffusion Processes
gafit
Genetic Algorithm for Curve Fitting
gaga
GaGa hierarchical model for high-throughput data analysis
gage
Generally Applicable Gene-set Enrichment for Pathway Analysis
gaggle
Broadcast data between R and Gaggle
gaia
GAIA: An R package for genomic analysis of significant chromosomal aberrations.
gains
Gains Table Package
GAIPE
Graphical Extension with Accuracy in Parameter Estimation (GAIPE)
galts
Genetic algorithms and C-steps based LTS (Least Trimmed Squares) estimation
gam
Generalized Additive Models
gamair
Data for "GAMs: An Introduction with R"
gambin
Fit the GamBin Model to Species Abundance Distributions
GAMBoost
Generalized linear and additive models by likelihood based boosting
gamboostLSS
Boosting Methods for 'GAMLSS'
gamboostLSS
Boosting Methods for GAMLSS
gamboostMSM
Estimating multistate models using gamboost()
gamclass
Functions and Data for a Course on Modern Regression and Classification
GAMens
Applies GAMbag, GAMrsm and GAMens Ensemble Classifiers for Binary Classification
games
Statistical Estimation of Game-Theoretic Models
gamesNws
Playing games using a NWS Server
GameTheory
Cooperative Game Theory
GameTheoryAllocation
Tools for Calculating Allocations in Game Theory
gamlr
Gamma Lasso Regression
gamlss
Generalised Additive Models for Location Scale and Shape
gamlss.add
Extra Additive Terms for GAMLSS Models
gamlss.cens
Fitting an Interval Response Variable Using `gamlss.family' Distributions
gamlss.cens
Fitting an interval response variable using gamlss.family distributions
gamlss.data
GAMLSS Data
gamlss.data
GAMLSS Data.
gamlss.demo
Demos for GAMLSS
gamlss.demo
Demos for GAMLSS
gamlss.dist
Distributions to be Used for GAMLSS Modelling
gamlss.dist
Distributions to be used for GAMLSS modelling.
gamlss.mx
A GAMLSS add on package for fitting mixture distributions
gamlss.mx
Fitting Mixture Distributions with GAMLSS
gamlss.nl
Fitting non linear parametric GAMLSS models
gamlss.nl
Fitting non linear parametric GAMLSS models
gamlss.spatial
Spatial Terms in GAMLSS Models
gamlss.tr
Generating and Fitting Truncated `gamlss.family' Distributions
gamlss.tr
Generating and fitting truncated (gamlss.family) distributions
gamlss.util
GAMLSS Utilities
gamm4
Generalized Additive Mixed Models using 'mgcv' and 'lme4'
gammadnamix
Package for intepretation of quantitative DNA mixtures
Gammareg
classic gamma regression: joint modeling of mean and shape parameters
gammSlice
Generalized additive mixed model analysis via slice sampling
gamreg
Robust and Sparse Regression via Gamma-Divergence
gamsel
Fit Regularization Path for Generalized Additive Models
GANPA
Gene Association Network-based Pathway Analysis
GANPAdata
The GANPA Datasets Package
gaoptim
Genetic Algorithm optimization for real-based and permutation-based problems
gap
Genetic Analysis Package
gapfill
Fill Missing Values in Satellite Data
gapmap
Functions for Drawing Gapped Cluster Heatmap with ggplot2
gapminder
Data from Gapminder
GAprediction
Prediction of gestational age with Illumina HumanMethylation450 data
GAR
Authorize and Request Google Analytics Data
garfield
GWAS Analysis of Regulatory or Functional Information Enrichment with LD correction
GARPFRM
Global Association of Risk Professionals: Financial Risk Manager
GAS
Generalized Autoregressive Score Models
gaselect
Genetic Algorithm (GA) for Variable Selection from High-Dimensional Data
gaston
Genetic Data Handling (QC, GRM, LD, PCA) & Linear Mixed Models
gatepoints
Easily Gate or Select Points on a Scatter Plot
gaucho
Genetic Algorithms for Understanding Clonal Heterogeneity and Ordering
GauPro
Gaussian Process Fitting
gaussDiff
Difference measures for multivariate Gaussian probability density functions
gaussfacts
The Greatest Mathematician Since Antiquity
gaussquad
Collection of functions for Gaussian quadrature
gazepath
Parse Eye-Tracking Data into Fixations
gazepath
Parse Eye-Tracking Data into Fixations
gb
Generalize Lambda Distribution and Generalized Bootstrapping
GB2
Generalized Beta Distribution of the Second Kind: Properties, Likelihood, Estimation
gbm
Generalized Boosted Regression Models
gbm2sas
Convert GBM Object Trees to SAS Code
gbRd
Utilities for processing Rd objects and files
gbs2ploidy
Inference of Ploidy from (Genotyping-by-Sequencing) GBS Data
gbts
Hyperparameter Search for Gradient Boosted Trees
gbutils
Simulation of Real and Complex Numbers and Small Programming Utilities
GCAI.bias
Guided Correction Approach for Inherited bias (GCAI.bias)
gCat
Graph-based two-sample tests for categorical data
gcatest
Genotype Conditional Association TEST
gcbd
'GPU'/CPU Benchmarking in Debian-Based Systems
GCD
Global Charcoal Database
gcdnet
LASSO and (adaptive) Elastic-Net penalized least squares, logistic regression, HHSVM and squared hinge loss SVM using a fast GCD algorithm
gcensus
Census populations and polygons
gcerisk
Generalized Competing Event Model
gcKrig
Analyze and Interpolate Geostatistical Count Data using Gaussian Copula
gclus
Clustering Graphics
gCMAP
Tools for Connectivity Map-like analyses
gCMAPWeb
A web interface for gene-set enrichment analyses
gcmdiag
Growth curve modeling diagnostics
gcmr
Gaussian Copula Marginal Regression
gconcord
Concord method for Graphical Model Selection
gcookbook
Data for "R Graphics Cookbook"
GCPM
Generalized Credit Portfolio Model
gCrisprTools
Suite of Functions for Pooled Crispr Screen QC and Analysis
gcrma
Background Adjustment Using Sequence Information
GDAdata
Datasets for the Book Graphical Data Analysis with R
gdalUtils
Wrappers for the Geospatial Data Abstraction Library (GDAL) Utilities
gdalUtils
Wrappers for the Geospatial Data Abstraction Library (GDAL) Utilities
gdata
Various R Programming Tools for Data Manipulation
gdata
Various R Programming Tools for Data Manipulation
g.data
Delayed-Data Packages
GDAtools
A toolbox for the analysis of categorical data in social sciences, and especially Geometric Data Analysis.
GDELTtools
Download, slice, and normalize GDELT data
gdimap
Generalized Diffusion Magnetic Resonance Imaging
gdistance
Distances and Routes on Geographical Grids
gdistance
Distances and Routes on Geographical Grids
gdm
Create Generalised Dissimilarity Models
gdm
Functions for Generalized Dissimilarity Modeling
Gdm01
Create Generalised Dissimilarity Models
gdmp
Genomic Data Management
gdns
Tools to Work with Google DNS Over HTTPS API
gdpc
Generalized Dynamic Principal Components
gds
Descriptive Statistics of Grouped Data
GDS
Genome-Wide Differential Splicing Detection
gdsfmt
R Interface to CoreArray Genomic Data Structure (GDS) Files
gdsfmt
R Interface to CoreArray Genomic Data Structure (GDS) files
gdtools
Utilities for Graphical Rendering
gear
Geostatistical Analysis in R
gee
Generalized Estimation Equation Solver
GEEaSPU
Adaptive Association Tests for Multiple Phenotypes using Generalized Estimating Equations (GEE)
geecc
Gene Set Enrichment Analysis Extended to Contingency Cubes
geeM
Solve Generalized Estimating Equations
GEEmediate
Mediation Analysis for Generalized Linear Models Using the Difference Method
geeni
gee in bounded memory, data from disk etc.
geepack
Generalized Estimating Equation Package
geesmv
Modified Variance Estimators for Generalized Estimating Equations
geigen
Calculate Generalized Eigenvalues, the Generalized Schur Decomposition and the Generalized Singular Value Decomposition of a Matrix Pair with Lapack
geiger
Analysis of Evolutionary Diversification
GEint
Misspecified Models for Gene-Environment Interaction
gelnet
Generalized Elastic Nets
gem
File Conversion for 'Gem Infrasound Logger'
GEM
GEM: fast association study for the interplay of Gene, Environment and Methylation
gemlog
File Conversion for 'Gem Infrasound Logger'
gems
Generalized Multistate Simulation Model
gemtc
Network Meta-Analysis Using Bayesian Methods
gemtc.jar
GeMTC Java binary
GenABEL
genome-wide SNP association analysis
GenABEL.data
Package contains data which is used by GenABEL example and test functions
GenABEL.data
Data Used by the GenABEL Examples and Test Functions
genalg
R Based Genetic Algorithm
GenAlgo
Classes and Methods to Use Genetic Algorithms for Feature Selection
genArise
Microarray Analysis tool
genasis
Global ENvironmental ASsessment Information System (GENASIS) computational tools
genbankr
Parsing GenBank files into semantically useful objects
GenBinomApps
Clopper-Pearson Confidence Interval and Generalized Binomial Distribution
GenCAT
Genetic Class Association Testing
gencve
General Cross Validation Engine
gendata
Generate and Modify Synthetic Datasets
gender
Predict Gender from Names Using Historical Data
genderizeR
Gender Prediction Based on First Names
genderNames
Client for the Genderize API That Determines the Gender of Names
gendist
Generated Probability Distribution Models
GeneAnswers
Integrated Interpretation of Genes
GENEAread
Package For Reading Binary files
geneAttribution
Identification of candidate genes associated with genetic variation
GeneBreak
Gene Break Detection
GeneCycle
Identification of Periodically Expressed Genes
GENE.E
Interact with GENE-E from R
GeneExpressionSignature
Gene Expression Signature based Similarity Metric
GeneF
Package for Generalized F-statistics
GeneFeST
Bayesian calculation of gene-specific FST from genomic SNP data
genefilter
genefilter: methods for filtering genes from high-throughput experiments
genefu
Computation of Gene Expression-Based Signatures in Breast Cancer
GeneGA
Design gene based on both mRNA secondary structure and codon usage bias using Genetic algorithm
GeneGeneInteR
Tools for Testing Gene-Gene Interaction at the Gene Level
Geneland
Detection of Structure from Multilocus Genetic Data
geneListPie
Profiling a gene list into GOslim or KEGG function pie
GeneMeta
MetaAnalysis for High Throughput Experiments
genemodel
Gene Model Plotting in R
GeneNet
Modeling and Inferring Gene Networks
geneNetBP
Belief Propagation in Genotype-Phenotype Networks
geneNetBP
Belief Propagation in Genotype-Phenotype Networks
GeneNetworkBuilder
Build Regulatory Network from ChIP-chip/ChIP-seq and Expression Data
GeneOverlap
Test and visualize gene overlaps
genepi
Genetic Epidemiology Design and Inference
geneplast
Evolutionary and plasticity analysis based on orthologous groups distribution
geneplotter
Graphics related functions for Bioconductor
generalCorr
Generalized Correlations and Initial Causal Path
generalhoslem
Goodness of Fit Tests for Logistic Regression Models
GeneralizedHyperbolic
The Generalized Hyperbolic Distribution
GeneralizedHyperbolic
The Generalized Hyperbolic Distribution
GeneralizedLambda
The Generalized Lambda Distribution
GeneralOaxaca
Blinder-Oaxaca Decomposition for Generalized Linear Model
GeneralTree
General Tree Data Structure
generator
Generate Data Containing Fake Personally Identifiable Information
geneRecommender
A gene recommender algorithm to identify genes coexpressed with a query set of genes
GeneReg
Construct time delay gene regulatory network
GeneRegionScan
GeneRegionScan
geneRxCluster
gRx Differential Clustering
GeneSelectMMD
Gene selection based on the marginal distributions of gene profiles that characterized by a mixture of three-component multivariate distributions
GeneSelector
Stability and Aggregation of ranked gene lists
geneSignatureFinder
A Gene-signatures finder tools
GENESIS
GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
geneSLOPE
Genome-Wide Association Study with SLOPE
geNetClassifier
Classify diseases and build associated gene networks using gene expression profiles
genetics
Population Genetics
GeneticsDesign
Functions for designing genetics studies
GeneticsPed
Pedigree and genetic relationship functions
GeneticSubsetter
Identify Favorable Subsets of Germplasm Collections
GeneticTools
Collection of Genetic Data Analysis Tools
GeNetIt
Spatial Graph-Theoretic Genetic Gravity Modelling
geneXtendeR
Optimal Gene Extensions From Histone Modification ChIP-seq Data
GenForImp
The Forward Imputation: A Sequential Distance-Based Approach for Imputing Missing Data
genie
A New, Fast, and Outlier Resistant Hierarchical Clustering Algorithm
GenKern
Functions for generating and manipulating binned kernel density estimates
genlasso
Path algorithm for generalized lasso problems
GENLIB
Genealogical Data Analysis
genMOSS
Functions for the Bayesian Analysis of GWAS Data
genMOSSplus
Application of MOSS algorithm to genome-wide association study (GWAS)
genoCN
genotyping and copy number study tools
GenoGAM
A GAM based framework for analysis of ChIP-Seq data
genomation
Summary, annotation and visualization of genomic data
GenomeGraphs
Plotting genomic information from Ensembl
GenomeInfoDb
Utilities for manipulating chromosome and other 'seqname' identifiers
genomeIntervals
Operations on genomic intervals
genomeplot
'Plot genome wide values for all chromosomes'
genomes
Genome sequencing project metadata
GenomicAlignments
Representation and manipulation of short genomic alignments
GenomicFeatures
Tools for making and manipulating transcript centric annotations
GenomicFiles
Distributed computing by file or by range
GenomicInteractions
R package for handling genomic interaction data
genomicper
Circular Genomic Permutation using Gwas p-Values of Association
GenomicRanges
Representation and manipulation of genomic intervals and variables defined along a genome
GenomicTools
Collection of Tools for Genomic Data Analysis
GenomicTuples
Representation and Manipulation of Genomic Tuples
Genominator
Analyze, manage and store genomic data
genoPlotR
Plot Publication-Grade Gene and Genome Maps
genoPlotR
Plot Publication-Grade Gene and Genome Maps
GenOrd
Simulation of Discrete Random Variables with Given Correlation Matrix and Marginal Distributions
genoset
A RangedSummarizedExperiment with methods for copy number analysis
genotypeeval
QA/QC of a gVCF or VCF file
genpathmox
Generalized PATHMOX Algorithm for PLS-PM, LS and LAD Regression
genphen
A tool for quantification of associations between genotypes and phenotypes with statistical learning techniques such as random forests and support vector machines as well as with Bayesian inference using hierarchical models
GenRank
Candidate gene prioritization based on convergent evidence
genridge
Generalized Ridge Trace Plots for Ridge Regression
GenSA
R Functions for Generalized Simulated Annealing
gensemble
generalized ensemble methods
gensphere
Generalized Spherical Distributions
genSurv
Generating Multi-State Survival Data
genutils
IRRI Geography Lab - General Utilities
GenVisR
Genomic Visualizations in R
GenWin
Spline Based Window Boundaries for Genomic Analyses
geo
Draw and Annotate Maps, Especially Charts of the North Atlantic
geo
Draw and Annotate Maps, Especially Charts of the North Atlantic
geoaxe
Split 'Geospatial' Objects into Pieces
geoBayes
Analysis of Geostatistical Data using Bayes and Empirical Bayes Methods
GeoBoxplot
Geographic Box Plot
geocodeHERE
Wrapper for Nokia's HERE Geocoding API
GeoConst
Datasets and helper functions for commonly required values in geochemistry.
geoCount
Analysis and Modeling for Geostatistical Count Data
geoCount
Analysis and Modeling for Geostatistical Count Data
GeoDE
A geometrical Approach to Differential expression and gene-set enrichment
geoelectrics
3D-Visualization of Geoelectric Resistivity Measurement Profiles
geoextras
Extras for the 'geo' package
geofd
Spatial Prediction for Function Value Data
geoGAM
Select Sparse Geoadditive Models for Spatial Prediction
GeoGenetix
Quantification of the effect of geographic versus environmental isolation on genetic differentiation
geohash
Tools for Geohash Creation and Manipulation
geojson
Classes for 'GeoJSON'
geojsonio
Convert Data from and to 'geoJSON' or 'topoJSON'
geojsonlint
Tools for Validating 'GeoJSON'
geoknife
Web-Processing of Large Gridded Datasets
GeoLight
Analysis of Light Based Geolocator Data
GEOmap
Topographic and Geologic Mapping
geomapdata
Data for topographic and Geologic Mapping
GeomComb
(Geometric) Forecast Combination Methods
GEOmetadb
A compilation of metadata from NCBI GEO
geometry
Mesh Generation and Surface Tesselation
geometry
Mesh Generation and Surface Tesselation
geomnet
Network Visualization in the 'ggplot2' Framework
geomorph
Geometric Morphometric Analyses of 2D/3D Landmark Data
geonames
Interface to www.geonames.org web service
geonames
Interface to www.geonames.org web service
geoparser
Interface to the Geoparser.io API for Identifying and Disambiguating Places Mentioned in Text
geophys
Geophysics, Continuum Mechanics, Mogi Models, Gravity
GEOquery
Get data from NCBI Gene Expression Omnibus (GEO)
geoR
Analysis of Geostatistical Data
geoRExtended
An extension of the geoR package.
geoRglm
A Package for Generalised Linear Spatial Models
GeoRiskR
Data and functions for Geotechnical Risk Assessment
georob
Robust Geostatistical Analysis of Spatial Data
georob
Robust Geostatistical Analysis of Spatial Data
geoscale
Geological Time Scale Plotting
GEOsearch
GEOsearch
geospacom
Facilitate Generating of Distance Matrices Used in Package 'spacom' and Plotting Data on Maps
geosphere
Spherical Trigonometry
geospt
Geostatistical Analysis and Design of Optimal Spatial Sampling Networks
geospt
Geostatistical Analysis and Design of Optimal Spatial Sampling Networks
geosptdb
Spatio-Temporal; Inverse Distance Weighting and Radial Basis Functions with Distance-Based Regression
geostatsp
Geostatistical Modelling with Likelihood and Bayes
geostatsp
Geostatistical Modelling with Likelihood and Bayes
GEOsubmission
Prepares microarray data for submission to GEO
geotech
Geotechnical Engineering
geotools
Geo tools
geotopbricks
An R Plug-in for the Distributed Hydrological Model GEOtop
geovec
Manipulation of geographic vector (points, lines, polygons) data
GeoXp
Interactive exploratory spatial data analysis
geozoo
Zoo of Geometric Objects
gepaf
Google Encoded Polyline Algorithm Format
GERGM
Estimation and Fit Diagnostics for Generalized Exponential Random Graph Models
gesca
Generalized Structured Component Analysis (GSCA)
GESE
Gene-Based Segregation Test
gesis
R Client for GESIS Data Catalogue (DBK)
gespeR
Gene-Specific Phenotype EstimatoR
GESTr
Gene Expression State Transformation
GetHFData
Download and Aggregate High Frequency Trading Data from Bovespa
getlandsat
Get Landsat 8 Data from Amazon Public Data Sets
getMet
Get Meteorological Data for Hydrologic Models
getMODIS
Utility package for creating or updating a local user-defined subsets of the global MODIS grid data online archive. Pre-processing functionalities for MODIS grid data using MODIS Reporjection Tool (MRT)
getopt
C-like getopt behavior.
getopt
C-like getopt behavior.
GetoptLong
Parsing Command-Line Arguments and Variable Interpolation
getPass
Masked User Input
GetR
GetR: Calculate Guttman error trees in R
gets
General-to-Specific (GETS) Modelling and Indicator Saturation Methods
GetTDData
Get Data for Brazilian Bonds (Tesouro Direto)
gettingtothebottom
Learning Optimization and Machine Learning for Statistics
gettz
Get the Timezone Information
GEVcdn
GEV Conditional Density Estimation Network
GEVStableGarch
ARMA-GARCH/APARCH Models with GEV and Stable Distributions
GEWIST
Gene Environment Wide Interaction Search Threshold
GExMap
A visual, intuitive, easy to use software giving access to a new type of information buried into your microarray data.
GFA
Group Factor Analysis
gfcanalysis
Tools for Working with Hansen et al. Global Forest Change Dataset
GFD
Tests for General Factorial Designs
GGally
Extension to 'ggplot2'
ggalt
Extra Coordinate Systems, Geoms and Statistical Transformations for 'ggplot2'
GGBase
GGBase infrastructure for genetics of gene expression package GGtools
ggbeeswarm
Categorical Scatter (Violin Point) Plots
ggbio
Visualization tools for genomic data.
ggcorrplot
Visualization of a Correlation Matrix using 'ggplot2'
ggcyto
Visualize Cytometry data with ggplot
ggdendro
Create Dendrograms and Tree Diagrams Using 'ggplot2'
ggdmc
Dynamic Model of Choice with Parallel Computation, and C++ Capabilities
gge
Genotype Plus Genotype-by-Environment Biplots
GGEBiplotGUI
Interactive GGE Biplots in R
ggene
Semivariogram and Exploratory Spatial Analysis of Genetic Data
ggenealogy
Visualization Tools for Genealogical Data
ggExtra
Add Marginal Histograms to 'ggplot2', and More 'ggplot2' Enhancements
ggforce
Accelerating 'ggplot2'
ggfortify
Data Visualization Tools for Statistical Analysis Results
ggghost
Capture the Spirit of Your 'ggplot2' Calls
ggguitar
Utilities for Creating Guitar Tablature
GGIR
Raw Accelerometer Data Analysis
ggiraph
Make 'ggplot2' Graphics Interactive
ggiraphExtra
Make Interactive 'ggplot2'. Extension to 'ggplot2' and 'ggiraph'
gglasso
Group Lasso Penalized Learning Using A Unified BMD Algorithm
gglogo
Geom for Logo Sequence Plots
ggloop
Create 'ggplot2' Plots in a Loop
ggm
Functions for graphical Markov models
ggmap
Spatial Visualization with ggplot2
ggmcmc
Tools for Analyzing MCMC Simulations from Bayesian Inference
GGMridge
Gaussian Graphical Models Using Ridge Penalty Followed by Thresholding and Reestimation
GGMselect
Gaussian Graphs Models Selection
ggnetwork
Geometries to Plot Networks with 'ggplot2'
ggparallel
Variations of Parallel Coordinate Plots for Categorical Data
ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
ggplot2movies
Movies Data
ggplotFL
Using ggplot2 in FLR
ggpmisc
Miscellaneous Extensions to 'ggplot2'
ggpolypath
Polygons with Holes for the Grammar of Graphics
ggpubr
'ggplot2' Based Publication Ready Plots
ggRandomForests
Visually Exploring Random Forests
ggraptR
Allows Interactive Visualization of Data Through a Web Browser GUI
ggrepel
Repulsive Text and Label Geoms for 'ggplot2'
ggROC
package for roc curve plot with ggplot2
ggsci
Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'
ggseas
'stats' for Seasonal Adjustment on the Fly with 'ggplot2'
ggsn
North Symbols and Scale Bars for Maps Created with 'ggplot2' or 'ggmap'
ggspectra
Extensions to 'ggplot2' for Radiation Spectra
ggstance
Horizontal 'ggplot2' Components
ggswissmaps
Offers Various Swiss Maps as Data Frames and 'ggplot2' Objects
ggtern
An Extension to 'ggplot2', for the Creation of Ternary Diagrams
ggThemeAssist
Add-in to Customize 'ggplot2' Themes
ggthemes
Extra Themes, Scales and Geoms for 'ggplot2'
GGtools
software and data for analyses in genetics of gene expression
ggtree
an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data
ggvis
Interactive Grammar of Graphics
GHap
Genome-Wide Haplotyping
ghit
Lightweight GitHub Package Installer
GHQp
Gauss Hermite Quadrature with pruning.
ghyp
A package on the generalized hyperbolic distribution and its special cases
ghyp
A Package on Generalized Hyperbolic Distribution and Its Special Cases
GiANT
Gene Set Uncertainty in Enrichment Analysis
GibbsACOV
Gibbs Sampler for One-Way Mixed-Effects ANOVA and ANCOVA Models
gibbs.met
Naive Gibbs Sampling with Metropolis Steps
Gibi
What the package does (short line)
Gifi
Gifi Methods for Categorical Multivariate Analysis
GIGrvg
Random Variate Generator for the GIG Distribution
GillespieSSA
Gillespie's Stochastic Simulation Algorithm (SSA)
gimme
Group Iterative Multiple Model Estimation
gimms
Download and Process GIMMS NDVI3g Data
GiNA
High Throughput Phenotyping
GiniWegNeg
Computing the Gini-Based Coefficients for Weighted and Negative Attributes
gIPFrm
Generalized Iterative Proportional Fitting for Relational Models
GiRaF
Gibbs Random Fields Analysis
girafe
Genome Intervals and Read Alignments for Functional Exploration
giRaph
The giRaph package for graph representation in R
GISTools
Some further GIS capabilities for R
gistr
Work with 'GitHub' 'Gists'
git2r
Provides Access to Git Repositories
gitgadget
Rstudio Addin for Version Control and Assignment Management using Git
githubinstall
A Helpful Way to Install R Packages Hosted on GitHub
gitlabr
Access to the Gitlab API
gitter
Quantification of Pinned Microbial Cultures
givitiR
The GiViTI Calibration Test and Belt
Giza
Constructing panels of population pyramid plots based on lattice
gjam
Generalized Joint Attribute Modeling
GK2011
Gaines and Kuklinski (2011) Estimators for Hybrid Experiments
gkmSVM
Gapped-Kmer Support Vector Machine
GLAD
Gain and Loss Analysis of DNA
glamlasso
Penalization in Large Scale Generalized Linear Array Models
glarma
Generalized Linear Autoregressive Moving Average Models
glasso
Graphical lasso- estimation of Gaussian graphical models
glba
General Linear Ballistic Accumulator Models
glba
General Linear Ballistic Accumulator Models
glcm
Calculate Textures from Grey-Level Co-Occurrence Matrices (GLCMs)
gld
Estimation and Use of the Generalised (Tukey) Lambda Distribution
GLDEX
Fitting Single and Mixture of Generalised Lambda Distributions (RS and FMKL) using Various Methods
gldist
An Asymmetry-Steepness Parameterization of the Generalized Lambda Distribution.
gldist
An Asymmetry-Steepness Parameterization of the Generalized Lambda Distribution.
GLDreg
Fit GLD Regression Model and GLD Quantile Regression Model to Empirical Data
Glimma
Interactive HTML graphics
glinternet
Learning Interactions via Hierarchical Group-Lasso Regularization
gllm
Generalised log-linear model
glm2
Fitting Generalized Linear Models
glmbb
All Hierarchical or Graphical Models for Generalized Linear Model
glmBfp
Bayesian Fractional Polynomials for GLMs
glmBfp
Bayesian Fractional Polynomials for GLMs
glmc
Fitting Generalized Linear Models Subject to Constraints
glm.ddR
Distributed 'glm' for Big Data using 'ddR' API
glmdm
R Code for Simulation of GLMDM
glmertree
Generalized Linear Mixed Model Trees
glmgraph
Graph-Constrained Regularization for Sparse Generalized Linear Models
glmlep
Fit GLM with LEP-based penalized maximum likelihood
glmm
Generalized Linear Mixed Models via Monte Carlo Likelihood Approximation
glmmADMB
Generalized Linear Mixed Models using 'AD Model Builder'
glmmBUGS
Generalised Linear Mixed Models with BUGS and JAGS
glmmBUGS
Generalised Linear Mixed Models with BUGS and JAGS
glmmGS
Gauss-Seidel Generalized Linear Mixed Model solver
glmmixedlasso
Generalized Linear Mixed Models with Lasso
glmmLasso
Variable Selection for Generalized Linear Mixed Models by L1-Penalized Estimation
glmmML
Generalized linear models with clustering
GLMMRR
Generalized Linear Mixed Model (GLMM) for Binary Randomized Response Data
glmmsr
Fit a Generalized Linear Mixed Model
glmnet
Lasso and Elastic-Net Regularized Generalized Linear Models
glmnetcr
Fit a penalized constrained continuation ratio model for predicting an ordinal response
glmpath
L1 Regularization Path for Generalized Linear Models and Cox Proportional Hazards Model
glmpathcr
Fit a penalized continuation ratio model for predicting an ordinal response.
glm.predict
Predicted Values and Discrete Changes for GLM
glmulti
Model selection and multimodel inference made easy
glmvsd
Variable Selection Deviation Measures and Instability Tests for High-Dimensional Generalized Linear Models
glmx
Generalized Linear Models Extended
glmx
Generalized Linear Models Extended
GlobalAncova
Calculates a global test for differential gene expression between groups
globalboosttest
Testing the additional predictive value of high-dimensional data
globalboosttest
Testing the additional predictive value of high-dimensional data
GlobalDeviance
Global Deviance Permutation Tests
GlobalFit
Bi-Level Optimization of Metabolic Network Models
globalGSA
Global Gene-Set Analysis for Association Studies.
GlobalOptions
Generate Functions to Get or Set Global Options
globalOptTests
Objective functions for benchmarking the performance of global optimization algorithms
globals
Identify Global Objects in R Expressions
globalSeq
Testing for association between RNA-Seq and high-dimensional data
globaltest
Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing
globe
Plot 2D and 3D Views of the Earth, Including Major Coastline
glogis
Fitting and Testing Generalized Logistic Distributions
glogis
Fitting and Testing Generalized Logistic Distributions
GLoMo
Naive General Location Model
glpkAPI
R Interface to C API of GLPK
glrt
Generalized Logrank Tests for Interval-censored Failure Time Data
GLSME
Generalized Least Squares with Measurement Error
glucpack
glucpack
glycanr
Tools for Analysing N-Glycan Data
gmailr
Access the Gmail RESTful API
gmapR
An R interface to the GMAP/GSNAP/GSTRUCT suite
gmapsdistance
Distance and Travel Time Between Two Points from Google Maps
gmatrix
GPU Computing in R
GMCM
Fast Estimation of Gaussian Mixture Copula Models
gMCP
Graph Based Multiple Comparison Procedures
gMCP
Graph Based Multiple Comparison Procedures
GMD
Generalized Minimum Distance of distributions
gmDatabase
Accessing a Geometallurgical Database with R
GMDH
Short Term Forecasting via GMDH-Type Neural Network Algorithms
Gmedian
Geometric Median, k-Median Clustering and Robust Median PCA
gmeta
Meta-Analysis via a Unified Framework of Confidence Distribution
Gmisc
Descriptive Statistics, Transition Plots, and More
gmkin
Graphical User Interface for Fitting Kinetic Models to Chemical Degradation Data
gmm
Generalized Method of Moments and Generalized Empirical Likelihood
gmm
Generalized Method of Moments and Generalized Empirical Likelihood
GMMBoost
Likelihood-based Boosting for Generalized mixed models
gmnl
Multinomial Logit Models with Random Parameters
gmodels
Various R Programming Tools for Model Fitting
gmp
Multiple Precision Arithmetic
gmpm
Generalized Multilevel Permutation Models
GMRP
GWAS-based Mendelian Randomization and Path Analyses
gmt
Interface between GMT Map-Making Software and R
gmum.r
GMUM Machine Learning Group Package
gmwm
Generalized Method of Wavelet Moments
gMWT
Generalized Mann-Whitney Type Tests
GNE
Computation of Generalized Nash Equilibria
gnlm
Generalized Nonlinear Regression Models
gnm
Generalized Nonlinear Models
gnmf
Generalized Non-negative Matrix Factorization Based on Renyi Divergence
gnmf
Generalized Non-Negative Matrix Factorization Based on Renyi Divergence
gnumeric
Read Data from Files Readable by 'gnumeric'
goalprog
Weighted and lexicographical goal programming and optimization
goeveg
Functions for Community Data and Ordinations
GOexpress
Visualise microarray and RNAseq data using gene ontology annotations
gof
Model-diagnostics based on cumulative residuals
gof
Model-diagnostics based on cumulative residuals
gofCopula
Goodness-of-Fit Tests for Copulae
GoFKernel
Testing Goodness-of-Fit with the Kernel Density Estimator
GofKmt
Khmaladze Martingale Transformation Goodness-of-Fit Test
goft
Tests of Fit for some Probability Distributions
goftest
Classical Goodness-of-Fit Tests for Univariate Distributions
GOFunction
GO-function: deriving biologcially relevant functions from statistically significant functions
gogamer
Go Game Data Parser
GOGANPA
GO-Functional-Network-based Gene-Set-Analysis
gogarch
Generalized Orthogonal GARCH (GO-GARCH) models
gogarch
Generalized Orthogonal GARCH (GO-GARCH) models
goldi
Gene Ontology Label Discernment and Identification
GoodmanKruskal
Association Analysis for Categorical Variables
googleAnalyticsR
Google Analytics API into R
googleAuthR
Easy Authentication with Google OAuth2 API
googleCloudStorageR
R Interface with Google Cloud Storage
googleComputeEngineR
R Interface with Google Compute Engine
googleformr
Collect Data Programmatically by POST Methods to Google Forms
GoogleGenomics
R Client for Google Genomics API
googlePublicData
Working with Google Public Data Explorer DSPL Metadata Files
googlesheets
Manage Google Spreadsheets from R
googleVis
R Interface to Google Charts
googleway
Retrieves Data from Google Maps APIs
GOplot
Visualization of Functional Analysis Data
GOpro
Find the most characteristic gene ontology terms for groups of human genes
goProfiles
goProfiles: an R package for the statistical analysis of functional profiles
GORCure
Fit Generalized Odds Rate Mixture Cure Model with Interval Censored Data
goric
Generalized Order-Restricted Information Criterion
GOSemSim
GO-terms Semantic Similarity Measures
goseq
Gene Ontology analyser for RNA-seq and other length biased data
GOSim
Computation of functional similarities between GO terms and gene products; GO enrichment analysis
GOstats
Tools for manipulating GO and microarrays.
GOsummaries
Word cloud summaries of GO enrichment analysis
GOTHiC
Binomial test for Hi-C data analysis
goTools
Functions for Gene Ontology database
govStatJPN
functions to get public survey data in Japan
gower
Gower's Distance
gpairs
gpairs: The Generalized Pairs Plot
gpairs
gpairs: The Generalized Pairs Plot
GPareto
Gaussian Processes for Pareto Front Estimation and Optimization
GPArotation
GPA Factor Rotation
GPArotation
GPA Factor Rotation
GPC
Generalized Polynomial Chaos
gPCA
Batch Effect Detection via Guided Principal Components Analysis
gpclib
General Polygon Clipping Library for R
GPCSIV
GPCSIV, Generalized Principal Component of Symbolic Interval variables
gpDDE
General Profiling Method for Delay Differential Equation
gPdtest
Bootstrap goodness-of-fit test for the generalized Pareto distribution
GPFDA
Apply Gaussian Process in Functional data analysis
GPfit
Gaussian Processes Modeling
gpg
GNU Privacy Guard for R
gpk
100 Data Sets for Statistics Education
gplm
Generalized Partial Linear Models (GPLM)
gplots
Various R Programming Tools for Plotting Data
gplots
Various R Programming Tools for Plotting Data
gpls
Classification using generalized partial least squares
GPLTR
Generalized Partially Linear Tree-Based Regression Model
gpmap
Analysing and plotting genotype-phenotype maps
gpr
A Minimalistic package to apply Gaussian Process in R
GPrank
Gaussian Process Ranking of Multiple Time Series
gprege
Gaussian Process Ranking and Estimation of Gene Expression time-series
gProfileR
Interface to the 'g:Profiler' Toolkit
GPseq
gpseq: Using the generalized Poisson distribution to model sequence read counts from high throughput sequencing experiments
gptk
Gaussian Processes Tool-Kit
gpuR
GPU Functions for R Objects
gputools
A Few GPU Enabled Functions
GPvam
Maximum Likelihood Estimation of Multiple Membership Mixed Models Used in Value-Added Modeling
Gqr
Determine knots and weights for Gaussian quadrature rules
gQTLBase
gQTLBase: infrastructure for eQTL, mQTL and similar studies
gQTLstats
gQTLstats: computationally efficient analysis for eQTL and allied studies
gquad
G Quadruplex Motif Prediction Tool
gr2
Graphical R$^2$
Grace
Graph-Constrained Estimation and Hypothesis Tests
grade
Binary Grading functions for R.
gradientForest
Random Forest functions for the Census of Marine Life synthesis project.
GRaF
Species distribution modelling using latent Gaussian random fields
gRain
Graphical Independence Networks
grainscape
Grains of connectivity and minimum planar graph modelling of landscape connectivity (Windows only)
gramEvol
Grammatical Evolution for R
GrammR
Graphical Representation and Modeling of Metagenomic Reads
GRANBase
Creating Continuously Integrated Package Repositories from Manifests
granova
Graphical Analysis of Variance
granovaGG
Graphical Analysis of Variance Using ggplot2
GRAPE
Gene-Ranking Analysis of Pathway Expression
gRapfa
Acyclic Probabilistic Finite Automata
graph
graph: A package to handle graph data structures
GraphAlignment
GraphAlignment
GraphAT
Graph Theoretic Association Tests
gRapHD
Efficient selection of undirected graphical models for high-dimensional datasets
GrapheR
A Multi-Platform GUI for Drawing Customizable Graphs in R
GraphFactor
Network Topology of Intravariable Clusters with Intervariable Links
graphicalVAR
Graphical VAR for Experience Sampling Data
graphicsQC
Quality Control for Graphics in R
graphicsQC
Quality Control for Graphics in R
graphite
GRAPH Interaction from pathway Topological Environment
GraphPAC
Identification of Mutational Clusters in Proteins via a Graph Theoretical Approach.
graphql
A GraphQL Query Parser
graphscan
Cluster Detection with Hypothesis Free Scan Statistic
graphTweets
Visualise Twitter Interactions
GrassmannOptim
Grassmann Manifold Optimization
graticule
Meridional and Parallel Lines for Maps
gRaviopt
What the package does (short line)
gravy
Gradient Analysis of Vegetation
gRbase
A Package for Graphical Modelling in R
gRbase
A package for graphical modelling in R
gRc
Inference in Graphical Gaussian Models with Edge and Vertex Symmetries
gRc
Inference in Graphical Gaussian Models with Edge and Vertex Symmetries
gRchain
Fitting Chain Graph Models
greenbrown
Land Surface Phenology and Trend Analysis
Greg
Regression Helper Functions
gregmisc
Greg's Miscellaneous Functions
GRENITS
Gene Regulatory Network Inference Using Time Series
greport
Graphical Reporting for Clinical Trials
grex
Gene ID Mapping for Genotype-Tissue Expression (GTEx) Data
GreyListChIP
Grey Lists -- Mask Artefact Regions Based on ChIP Inputs
greyzoneSurv
Fit a Grey-Zone Model with Survival Data
Grho
Grho parameters for asymptotic regression
Grid2Polygons
Convert Spatial Grids to Polygons
gridBase
Integration of base and grid graphics
gridDebug
Debugging 'grid' Graphics
gridDebug
Debugging 'grid' Graphics
gridExtra
Miscellaneous Functions for "Grid" Graphics
gridExtra
functions in Grid graphics
gridgame
A game framework for R
gridGraphics
Redraw Base Graphics Using 'grid' Graphics
gridGraphviz
Drawing Graphs with 'grid'
gridGraphviz
Drawing Graphs with 'grid'
gridsample
Tools for Grid-Based Survey Sampling Design
gridsampler
A Simulation Tool to Determine the Required Sample Size for Repertory Grid Studies
gridSVG
Export 'grid' Graphics as SVG
gridSVG
Export 'grid' Graphics as SVG
GriegSmith
Uses Grieg-Smith method on 2 dimentional spatial data
gRim
Graphical Interaction Models
grImport
Importing Vector Graphics
grImport
Importing Vector Graphics
GRmetrics
Calculate growth-rate inhibition (GR) metrics
grndata
Synthetic Expression Data for Gene Regulatory Network Inference
grnn
General regression neural network
groc
Generalized Regression on Orthogonal Components
grofit
The package was developed to fit fit many growth curves obtained under different conditions.
groHMM
GRO-seq Analysis Pipeline
gromovlab
Gromov-Hausdorff Type Distances for Labeled Metric Spaces
grouped
Regression Analysis of Grouped and Coarse Data
groupRemMap
Regularized Multivariate Regression for Identifying Master Predictors Using the GroupRemMap Penalty
GroupSeq
A GUI-Based Program to Compute Probabilities Regarding Group Sequential Designs
GroupTest
Multiple Testing Procedure for Grouped Hypotheses
growcurves
Bayesian Semi and Nonparametric Growth Curve Models that Additionally Include Multiple Membership Random Effects
growfunctions
Bayesian Non-Parametric Dependent Models for Time-Indexed Functional Data
growthcurver
Simple Metrics to Summarize Growth Curves
growthmodels
Nonlinear Growth Models
growthrate
Bayesian reconstruction of growth velocity
growthrates
Estimate Growth Rates from Experimental Data
grplasso
Fitting user specified models with Group Lasso penalty
grppenalty
Concave 1-norm and 2-norm group penalty in linear and logistic regression
grpreg
Regularization Paths for Regression Models with Grouped Covariates
grpregOverlap
Penalized Regression Models with Overlapping Grouped Covariates
grpSLOPE
Group Sorted L1 Penalized Estimation
grpss
Group Screening and Selection
grr
Alternative Implementations of Base R Functions
GRS.test
GRS Test for Portfolio Efficiency and Its Statistical Power Analysis
grt
General Recognition Theory
GRTo
Tools for the Analysis of Gutenberg-Richter Distributions of Earthquake Magnitudes
GRTS
Spatially balanced sampling based on GRTS
GSA
Gene set analysis
GSAgm
Gene Set Analysis using the Gamma Method
gsalib
Utility Functions For GATK
GSALightning
Fast Permutation-based Gene Set Analysis
GSAQ
Gene Set Analysis with QTL
GSAR
Gene Set Analysis in R
gsarima
Two functions for Generalized SARIMA time series simulation
gsbDesign
Group Sequential Bayes Design
GSCA
GSCA: Gene Set Context Analysis
gsDesign
Group Sequential Design
gsDesign
Group Sequential Design
GSE
Robust Estimation in the Presence of Cellwise and Casewise Contamination and Missing Data
GSEABase
Gene set enrichment data structures and methods
GSEAlm
Linear Model Toolset for Gene Set Enrichment Analysis
GSEArot
GSEA rotation
gsEasy
Gene Set Enrichment Analysis in R
GSED
Group Sequential Enrichment Design
gSeg
Graph-Based Change-Point Detection (g-Segmentation)
gSEM
Semi-Supervised Generalized Structural Equation Modeling
gset
Group Sequential Design in Equivalence Studies
gsg
Calculation of selection coefficients
gsheet
Download Google Sheets Using Just the URL
GSIF
Global Soil Information Facilities
GSIF
Global Soil Information Facilities
gskat
GEE_KM
gsl
wrapper for the Gnu Scientific Library
gslcca
Generalized Semi-Linear Canonical Correlation Analysis
GSM
Gamma Shape Mixture
gsmoothr
Smoothing tools
gsmoothr
Smoothing tools
GSMX
Multivariate Genomic Selection
gsod
obtain daily weather data
GSODR
Download, Clean and Generate New Variables from GSOD Data
gsrc
Genome Structure Rearrangement Calling in Genomes with High Synteny
GSReg
Gene Set Regulation (GS-Reg)
GSRI
Gene Set Regulation Index
gss
General Smoothing Splines
gsscopu
Copula Density and 2-D Hazard Estimation using Smoothing Splines
GSSE
Genotype-Specific Survival Estimation
gstat
Spatial and Spatio-Temporal Geostatistical Modelling, Prediction and Simulation
gstat
Spatial and Spatio-Temporal Geostatistical Modelling, Prediction and Simulation
gsubfn
Utilities for strings and function arguments.
GSVA
Gene Set Variation Analysis for microarray and RNA-seq data
gsw
Gibbs Sea Water Functions
gsymbols
Grid-based symbols
GsymPoint
Estimation of the Generalized Symmetry Point, an Optimal Cutpoint in Continuous Diagnostic Tests
gtable
Arrange 'Grobs' in Tables
gtcorr
Calculate efficiencies of group testing algorithms with correlated responses
gte
Generalized Turnbull's Estimator
gTests
Graph-Based Two-Sample Tests
gtheory
Apply Generalizability Theory with R
gtools
Various R Programming Tools
gtop
Game-Theoretically OPtimal (GTOP) Reconciliation Method
gtrellis
Genome Level Trellis Layout
gtrendsR
Perform and Display Google Trends Queries
gtx
Genetics ToolboX
GuardianR
The Guardian API Wrapper
Guerry
Maps, data and methods related to Guerry (1833) "Moral Statistics of France"
Guerry
Maps, data and methods related to Guerry (1833) "Moral Statistics of France"
guess
Adjust Estimates of Learning for Guessing
GUIDE
GUI for DErivatives in R
GUIDEseq
GUIDE-seq analysis pipeline
GUILDS
Implementation of Sampling Formulas for the Unified Neutral Model of Biodiversity and Biogeography, with or without Guild Structure
GUIProfiler
Graphical User Interface for Rprof()
Guitar
Guitar
gumbel
The Gumbel-Hougaard Copula
GUniFrac
Generalized UniFrac distances
gunsales
Statistical Analysis of Monthly Background Checks of Gun Purchases
gutenbergr
Download and Process Public Domain Works from Project Gutenberg
GUTS
Fast Calculation of the Likelihood of a Stochastic Survival Model
GUTS
Fast Calculation of the Likelihood of a Stochastic Survival Model
GVAR
Vector Error Correction Model (VECM), VECM with exogenous I(1) variables, Global VAR (GVAR)
gvc
Global Value Chains Tools
gvcm.cat
Regularized Categorical Effects/Categorical Effect Modifiers/Continuous/Smooth Effects in GLMs
Gviz
Plotting data and annotation information along genomic coordinates
gvlma
Global Validation of Linear Models Assumptions
GWAF
Genome-Wide Association/Interaction Analysis and Rare Variant Analysis with Family Data
gwascat
representing and modeling data in the EMBL-EBI GWAS catalog
GWASExactHW
Exact Hardy-Weinburg testing for Genome Wide Association Studies
GWASTools
Tools for Genome Wide Association Studies
GWAtoolbox
GWAS Quality Control
gwdegree
A Shiny App to Aid Interpretation of Geometrically-Weighted Degree Estimates in Exponential Random Graph Models
gwerAM
Controlling the genome-wide type I error rate in association mapping experiments
gwfa
Geographically Weighted Fractal Analysis
GWG
Calculation of probabilities for inadequate and excessive gestational weight gain
gWidgets
gWidgets API for building toolkit-independent, interactive GUIs
gWidgets
gWidgets API for building toolkit-independent, interactive GUIs
gWidgets2
Rewrite of gWidgets API for Simplified GUI Construction
gWidgets2RGtk2
Implementation of gWidgets2 for the RGtk2 Package
gWidgets2tcltk
Toolkit Implementation of gWidgets2 for tcltk
gWidgetsManipulate
port of RStudio's manipulate package using gWidgets
gWidgetsRGtk2
Toolkit implementation of gWidgets for RGtk2
gWidgetsrJava
Toolkit implementation of gWidgets for rJava
gWidgetstcltk
Toolkit implementation of gWidgets for tcltk package
gWidgetstcltk
Toolkit implementation of gWidgets for tcltk package
gWidgetsWWW
Toolkit implementation of the gWidgets API for use with web pages
gWidgetsWWW2
Toolkit implementation of the gWidgets API for use with web pages
GWLelast
Geographically Weighted Logistic Elastic Net Regression
GWmodel
Geographically-Weighted Models
gWQS
Generalized Weighted Quantile Sum Regression
GWRM
Generalized Waring Regression Model for Count Data
gwrr
Fits geographically weighted regression models with diagnostic tools
GWsignif
Estimating Genome-Wide Significance for Whole Genome Sequencing Studies, Either Single SNP Tests or Region-Based Tests
GxM
Maximum Likelihood Estimation for Gene-by-Measured Environment Interaction Models
gym
Provides Access to the OpenAI Gym API
gyriq
Kinship-Adjusted Survival SNP-Set Analysis
h2o
R Interface for H2O
h5
Interface to the 'HDF5' Library
h5vc
Managing alignment tallies using a hdf5 backend
haarfisz
Software to perform Haar Fisz transforms
HaarSeg
HaarSeg
HAC
Estimation, Simulation and Visualization of Hierarchical Archimedean Copulae (HAC)
HadoopStreaming
Utilities for using R scripts in Hadoop streaming
HadoopStreaming
Utilities for using R scripts in Hadoop streaming
hafroAssmt
Hafro Assessment Toolbox
hail
Read HYDRA Rainfall Data
hamlet
Hierarchical Optimal Matching and Machine Learning Toolbox
HandTill2001
Multiple Class Area under ROC Curve
Hankel
Univariate non-parametric two-sample test based on empirical Hankel transforms.
hansard
Provides Easy Downloading Capabilities for the UK Parliament API
hapassoc
Inference of Trait Associations with SNP Haplotypes and Other Attributes using the EM Algorithm
HapEstXXR
Multi-Locus Stepwise Regression
hapFabia
hapFabia: Identification of very short segments of identity by descent (IBD) characterized by rare variants in large sequencing data
HAPim
HapIM
Haplin
Analyzing Case-Parent Triad and/or Case-Control Data with SNP Haplotypes
haplo.ccs
Estimate Haplotype Relative Risks in Case-Control Data
haploReconstruct
Reconstruction of Haplotype-Blocks from Time Series Data
HaploSim
Functions to simulate haplotypes
haplo.stats
Statistical Analysis of Haplotypes with Traits and Covariates when Linkage Phase is Ambiguous
HaploSurvival
Modelling of haplo-effects for survival data, including competing risks. Effect of haplomatch for BMT studies.
haplotyper
Tool for Clustering Genotypes in Haplotypes
haplotypes
Haplotype Inference and Statistical Analysis of Genetic Variation
HAP.ROR
Recursive Organizer (ROR)
HardyWeinberg
Statistical Tests and Graphics for Hardy-Weinberg Equilibrium
Harman
The removal of batch effects from datasets using a PCA and constrained optimisation based technique
HarmonicRegression
Harmonic Regression to One or more Time Series
Harshlight
A "corrective make-up" program for microarray chips
HARtools
Read HTTP Archive ('HAR') Data
harvestr
A Parallel Simulation Framework
Harvest.Tree
Harvest the Classification Tree
hash
Full feature implementation of hash/associated arrays/dictionaries
hashFunction
A collection of non-cryptographic hash functions
hashids
Generate Short Unique YouTube-Like IDs (Hashes) from Integers
hashmap
The Faster Hash Map
hashr
Hash R Objects to Integers Fast
hasseDiagram
Drawing Hasse diagram
haven
Import and Export 'SPSS', 'Stata' and 'SAS' Files
hawkes
Hawkes process simulation and calibration toolkit
hawkes
Hawkes process simulation and calibration toolkit
Hawkes
Hawkes
hazus
Damage functions from FEMA's HAZUS software for use in modeling financial losses from natural disasters
hBayesDM
Hierarchical Bayesian Modeling of Decision-Making Tasks
HBglm
Hierarchical Bayesian Regression for GLMs
hbiclust
Hierarchical Biclustering
hbim
Hill/Bliss Independence Model for Combination Vaccines
hbm
Hierarchical Block Matrix Analysis
hbmem
Hierarchical Bayesian Analysis of Recognition Memory
hbsae
Hierarchical Bayesian Small Area Estimation
HBSTM
Hierarchical Bayesian Space-Time models for Gaussian space-time data.
hcc
Hidden correlation check
hcci
Interval estimation for the parameters of linear models with heteroskedasticity (Wild Bootstrap)
HCgglasso
Group-Lasso with Hierarchical Clustering
hcp
Change Point Estimation for Regression with Heteroscedastic Data
HCsnip
Semi-supervised adaptive-height snipping of the Hierarchical Clustering tree
hda
Heteroscedastic Discriminant Analysis
HDclassif
High Dimensional Supervised Classification and Clustering
HDDesign
Sample Size Calculation for High Dimensional Classification Study
hddplot
Use Known Groups in High-Dimensional Data to Derive Scores for Plots
hddtools
Hydrological Data Discovery Tools
hdeco
Hierarchical DECOmposition of Entropy for Categorical Map Comparisons
HDF5Array
An array-like container for convenient access and manipulation of HDF5 datasets
HDGLM
Tests for High Dimensional Generalized Linear Models
hdi
High-Dimensional Inference
hdi
High-Dimensional Inference
HDInterval
Highest (Posterior) Density Intervals
hdlm
Fitting High Dimensional Linear Models
hdlm
Fitting High Dimensional Linear Models
hdm
High-Dimensional Metrics
hdm
High-Dimensional Metrics
HDMD
Statistical Analysis Tools for High Dimension Molecular Data (HDMD)
hdnom
Nomograms for High-Dimensional Cox Models
HDoutliers
Leland Wilkinson's Algorithm for Detecting Multidimensional Outliers
hdpca
Principal Component Analysis in High-Dimensional Data
HDPenReg
High-Dimensional Penalized Regression
HDPenReg
High-Dimensional Penalized Regression
hdr
Interface to the UNDR Human Development Report API
HDR
Processing of hyperspectral reflectance data
hdrcde
Highest density regions and conditional density estimation
HDTD
Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Transposable Data (HDTD)
HDtweedie
The Lasso for the Tweedie's Compound Poisson Model Using an IRLS-BMD Algorithm
HEAT
Health Effects of Air Pollution and Temperature (HEAT)
heatex
Heat exchange calculations during physical activity.
heatmap3
An Improved Heatmap Package
heatmapFit
Fit Statistic for Binary Dependent Variable Models
heatmaply
Interactive Heat Maps Using 'plotly'
heatmap.plus
Heatmap with more sensible behavior.
Heatplus
Heatmaps with row and/or column covariates and colored clusters
heavy
Robust Estimation Using Heavy-Tailed Distributions
heemod
Models for Health Economic Evaluation
hellno
Providing 'stringsAsFactors=FALSE' Variants of 'data.frame()' and 'as.data.frame()'
helloJavaWorld
Hello Java World
helloJavaWorld
Hello Java World
HelloRanges
Introduce *Ranges to bedtools users
HELP
Tools for HELP data analysis
HelpersMG
Tools for Earth Meteorological Analysis
helsinki
R Tools for Helsinki Open Data
HEM
Heterogeneous error model for identification of differentially expressed genes under multiple conditions
hepi
Functions for estimating hedonic elementary price indices
heplots
Visualizing Hypothesis Tests in Multivariate Linear Models
heplots
Visualizing Hypothesis Tests in Multivariate Linear Models
herblabel
Making Labels for Herbarium Specimens in RTF and More
hergm
Hierarchical Exponential-Family Random Graph Models
heritability
Marker-Based Estimation of Heritability Using Individual Plant or Plot Data
hermite
Generalized Hermite Distribution
hetmeta
Heterogeneity Measures in Meta-Analysis
hett
Heteroscedastic t-regression
het.test
White's Test for Heteroskedasticity
heuristica
Heuristics Including Take the Best and Unit-Weight Linear
hexbin
Hexagonal Binning Routines
hextri
Hexbin Plots with Triangles
hexView
Viewing Binary Files
hflights
Flights that departed Houston in 2011
hgam
High-dimensional Additive Modelling
hgam
High-dimensional Additive Modelling
hglasso
Learning graphical models with hubs
hglm
Hierarchical Generalized Linear Models
hglm
Hierarchical Generalized Linear Models
hglm.data
Data for The hglm Package
hglm.data
Data for The hglm Package
hgm
Holonomic Gradient Method and Gradient Descent
HGNChelper
Handy Functions for Working With HGNC Gene Symbols and Affymetrix Probeset Identifiers.
HH
Statistical Analysis and Data Display: Heiberger and Holland
HHG
Heller-Heller-Gorfine Tests of Independence and Equality of Distributions
hht
The Hilbert-Huang Transform: Tools and Methods
HI
Simulation from distributions supported by nested hyperplanes
hiAnnotator
Functions for annotating GRanges objects
HIBAG
HLA Genotype Imputation with Attribute Bagging
HIBAG
HIBAG -- HLA Genotype Imputation with Attribute Bagging
HIBPwned
Bindings for the 'HaveIBeenPwned.com' Data Breach API
HiCfeat
Multiple Logistic Regression for 3D Chromatin Domain Border Analysis
HiCglmi
Probing Factor-Dependent Long-Range Contacts using Regression with Higher-Order Interaction Terms
HiClimR
Hierarchical Climate Regionalization
HiCseg
Detection of domains in HiC data
hiddenf
The All-Configurations, Maximum-Interaction F-Test for Hidden Additivity
HiddenMarkov
Hidden Markov Models
HiDimDA
High Dimensional Discriminant Analysis
HiDimMaxStable
Inference on High Dimensional Max-Stable Distributions
hierarchicalDS
Functions For Performing Hierarchical Analysis of Distance Sampling Data
hierarchicalSets
Set Data Visualization Using Hierarchies
hierband
Convex Banding of the Covariance Matrix
hierDiversity
Hierarchical Multiplicative Partitioning of Complex Phenotypes
hierformR
Analysis of Dynamics Hierarchy Formation
hierfstat
Estimation and Tests of Hierarchical F-Statistics
hierGWAS
Asessing statistical significance in predictive GWA studies
hierNet
A Lasso for Hierarchical Interactions
HierO
A graphical user interface for calculating power and sample size for hierarchical data
hier.part
Hierarchical Partitioning
hiertest
Convex Hierarchical Testing of Interactions
HIest
Hybrid index estimation
highcharter
A Wrapper for the 'Highcharts' Library
highD2pop
Two-Sample Tests for Equality of Means in High Dimension
HighDimOut
Outlier Detection Algorithms for High-Dimensional Data
highfrequency
Tools For Highfrequency Data Analysis
highfrequency
Tools for Highfrequency Data Analysis
highlight
Syntax Highlighter
highlight
Syntax highlighter
highmean
Two-Sample Tests for High-Dimensional Mean Vectors
highr
Syntax Highlighting for R Source Code
highriskzone
Determining and Evaluating High-Risk Zones
highriskzone
Determining and Evaluating High-Risk Zones
highSCREEN
High Throughput Screening for Plate Based Essays
highTtest
Simultaneous Critical Values for t-Tests in Very High Dimensions
HilbertCurve
Making 2D Hilbert Curve
HilbertVis
Hilbert curve visualization
HilbertVisGUI
HilbertVisGUI
hillmakeR
Perform occupancy analysis
HiLMM
Estimation of Heritability in Linear Mixed Models
hindexcalculator
H-Index Calculator using Data from a Web of Science (WoS) Citation Report
hint
Tools for hypothesis testing based on Hypergeometric Intersection distributions
HiPLARM
High Performance Linear Algebra in R
hiPOD
hierarchical Pooled Optimal Design
hiReadsProcessor
Functions to process LM-PCR reads from 454/Illumina data
hisemi
Hierarchical Semiparametric Regression of Test Statistics
hisemi
Hierarchical Semiparametric Regression of Test Statistics
hisse
Hidden State Speciation and Extinction
HistData
Data Sets from the History of Statistics and Data Visualization
HistData
Data Sets from the History of Statistics and Data Visualization
HistDAWass
Histogram-Valued Data Analysis
histmdl
A Most Informative Histogram-Like Model
histogram
Construction of Regular and Irregular Histograms with Different Options for Automatic Choice of Bins
HistogramTools
Utility Functions for R Histograms
HistogramTools
Utility Functions for R Histograms
historydata
Data Sets for Historians
hit
Hierarchical Inference Testing
hitandrun
"Hit and Run" and "Shake and Bake" for Sampling Uniformly from Convex Shapes
HiTC
High Throughput Chromosome Conformation Capture analysis
HITXML
Planning tools for ion beam therapy
hive
Hadoop InteractiVE
hive
Hadoop InteractiVE
HiveR
2D and 3D Hive Plots for R
HIV.LifeTables
HIV calibrated model life tables for countries with generalized HIV epidemics
HK80
Conversion Tools for HK80 Geographical Coordinate System
hkclustering
Ensemble Clustering using K Means and Hierarchical Clustering
hkevp
Spatial Extreme Value Analysis with the Hierarchical Model of Reich and Shaby (2012)
hkex.api
API to Retrieve Data from Hong Kong Stock Exchange
HKprocess
Hurst-Kolmogorov Process
h.likelihood
Statistical Modeling and Inference via Hierarchical Likelihood
HLMdiag
Diagnostic Tools for Hierarchical (Multilevel) Linear Models
HLSM
Hierarchical Latent Space Network Model
HMDHFDplus
Read HMD and HFD Data from the Web
hmeasure
The H-measure and other scalar classification performance metrics
Hmisc
Harrell Miscellaneous
HMM
HMM - Hidden Markov Models
HMMCont
Hidden Markov Model for Continuous Observations Processes
HMMcopy
Copy number prediction with correction for GC and mappability bias for HTS data
hmm.discnp
Hidden Markov Models with Discrete Non-Parametric Observation Distributions
hmmm
hierarchical multinomial marginal models
HMMpa
Analysing accelerometer data using hidden Markov models
hmmr
Data and examples package accompanying the book 'HMMs with R'
HMP
Hypothesis Testing and Power Calculations for Comparing Metagenomic Samples from HMP
HMPTrees
Statistical Object Oriented Data Analysis of RDP-Based Taxonomic Trees from Human Microbiome Data
HMR
Flux Estimation with Static Chamber Data
hms
Pretty Time of Day
HMSC
Hierarchical modelling of species community
HMVD
Group Association Test using a Hidden Markov Model
hnp
Half-Normal Plots with Simulation Envelopes
hoa
Higher Order Likelihood Inference
hoardeR
Collect and Retrieve Annotation Data for Various Genomic Data Using Different Webservices
holdem
Texas Holdem simulator
Holidays
Holiday and Half-Day Data, for Use with the 'TimeWarp' Package
Holidays
Holiday and Half-Day Data, for Use with the 'TimeWarp' Package
homals
Gifi Methods for Optimal Scaling
homeR
Useful Functions for Building Physics
Homeric
Doughnut Plots
homomorpheR
Homomorphic Computations in R
HomoPolymer
Theoretical Model to Simulate Radical Polymerization
homtest
Homogeneity tests for Regional Frequency Analysis
hopach
Hierarchical Ordered Partitioning and Collapsing Hybrid (HOPACH)
hopbyhop
Transmissions and Receptions in a Hop by Hop Network
horizon
Horizon Search Algorithm
hornpa
Horn's (1965) Test to Determine the Number of Components/Factors
horseshoe
Implementation of the Horseshoe Prior
hot.deck
Multiple Hot-Deck Imputation
HotDeckImputation
Hot Deck Imputation Methods for Missing Data
Hotelling
Hotelling's T-squared test and variants
hotspot
Software Hotspot Analysis
hotspots
Hot spots
housingData
U.S. Housing Data from 2008 to 2016
howmany
A lower bound for the number of correct rejections
hpar
Human Protein Atlas in R
HPbayes
Heligman Pollard mortality model parameter estimation using Bayesian Melding with Incremental Mixture Importance Sampling
hpcwld
High Performance Cluster Models Based on Kiefer-Wolfowitz Recursion
hpcwld
High Performance Cluster Models Based on Kiefer-Wolfowitz Recursion
hpoPlot
Functions for Plotting HPO Terms
hqmisc
Miscellaneous convenience functions and dataset
hqreg
Regularization Paths for Lasso or Elastic-Net Penalized Huber Loss Regression and Quantile Regression
HRM
High-Dimensional Repeated Measures
hrr
Horizontal rule for the R language.
HSAR
Hierarchical Spatial Autoregressive Model (HSAR)
HSAUR
A Handbook of Statistical Analyses Using R (1st Edition)
HSAUR2
A Handbook of Statistical Analyses Using R (2nd Edition)
HSAUR3
A Handbook of Statistical Analyses Using R (3rd Edition)
hsdar
Manage, Analyse and Simulate Hyperspectral Data
hSDM
hierarchical Bayesian species distribution models
hsicCCA
Canonical Correlation Analysis based on Kernel Independence Measures
hsm
A Path-Based BCD for Proximal Function of Latent Group Lasso
hsmm
Hidden Semi Markov Models
hsphase
Phasing, Pedigree Reconstruction, Sire Imputation and Recombination Events Identification of Half-sib Families Using SNP Data
HSROC
Meta-Analysis of Diagnostic Test Accuracy when Reference Test is Imperfect
HSSVD
Biclustering with Heterogeneous Variance
HTDA
HTDA (High Throughput Data Analysis)
htdp
Horizontal Time Dependent Positioning
htmltab
Assemble Data Frames from HTML Tables
htmlTable
Advanced Tables for Markdown/HTML
htmltidy
Tidy Up and Test XPath Queries on HTML and XML Content
htmltools
R Tools for Producing HTML (Base64 Coding and R Interface to the tth/ttm TeX to HTML Translator)
htmltools
Tools for HTML
HTMLUtils
Facilitates Automated HTML Report Creation
htmlwidgets
HTML Widgets for R
HTqPCR
Automated analysis of high-throughput qPCR data
hts
Hierarchical and Grouped Time Series
HTSanalyzeR
Gene set over-representation, enrichment and network analyses for high-throughput screens
HTSCluster
Clustering High-Throughput Transcriptome Sequencing (HTS) Data
HTSCluster
Clustering High-Throughput Transcriptome Sequencing (HTS) Data
HTSDiff
Differential Analysis of RNA-Seq Data with Poisson Mixture Models
HTSeqGenie
A NGS analysis pipeline.
htSeqTools
Quality Control, Visualization and Processing for High-Throughput Sequencing data
HTSFilter
Filter replicated high-throughput transcriptome sequencing data
HTSSIP
High Throughput Sequencing of Stable Isotope Probing Data Analysis
httk
High-Throughput Toxicokinetics
httpcache
Query Cache for HTTP Clients
httpcode
'HTTP' Status Code Helper
httping
'Ping' 'URLs' to Time 'Requests'
httpRequest
Basic HTTP Request
httpuv
HTTP and WebSocket Server Library
httr
Tools for Working with URLs and HTTP
hubbell
Functions for Hubbell's Grand Unified Theory
huge
High-Dimensional Undirected Graph Estimation
HUM
compute HUM value and visualize ROC curves
humanFormat
Human-friendly formatting functions
humaniformat
A Parser for Human Names
humarray
Simplify Analysis and Annotation of Human Microarray Datasets
humidity
An R Package for Calculating Water Vapor Measures from Temperature and Relative Humidity
hunspell
High-Performance Stemmer, Tokenizer, and Spell Checker for R
hwde
Models and Tests for Departure from Hardy-Weinberg Equilibrium and Independence Between Loci
HWEBayes
Bayesian investigation of Hardy-Weinberg Equilibrium via estimation and testing.
HWEintrinsic
Objective Bayesian Testing for the Hardy-Weinberg Equilibrium Problem
HW.pval
Testing Hardy-Weinberg Equilibrium for Multiallelic Genes
hwriter
HTML Writer - Outputs R objects in HTML format
hwriter5
hwriter5: Writing HTML5 from R
hwriterPlus
hwriterPlus: Extending the hwriter Package
hwwntest
Tests of White Noise using Wavelets
HWxtest
Exact Tests for Hardy-Weinberg Proportions
hybridEnsemble
Build, Deploy and Evaluate Hybrid Ensembles
hybridHclust
Hybrid Hierarchical Clustering
HybridMC
Implementation of the Hybrid Monte Carlo and Multipoint Hybrid Monte Carlo sampling techniques
HybridMC
Implementation of the Hybrid Monte Carlo and Multipoint Hybrid Monte Carlo sampling techniques
hybridModels
Stochastic Hybrid Models in Dynamic Networks
HybridMTest
Hybrid Multiple Testing
HydeNet
Hybrid Bayesian Networks Using R and JAGS
hydroApps
Tools and models for hydrological applications
hydroEFS
Hydrological Event Finding and Summarising (hydroEFS).
hydrogeo
Groundwater Data Presentation and Interpretation
hydroGOF
Goodness-of-fit functions for comparison of simulated and observed hydrological time series
HydroMe
R codes for estimating water retention and infiltration model parameters using experimental data
hydroMet
Meteorological Data for Hydrological Modeling
hydroPSO
Particle Swarm Optimisation, with focus on Environmental Models
hydrostats
Hydrologic Indices for Daily Time Series Data
hydroTSM
Time series management, analysis and interpolation for hydrological modelling
hyfo
Hydrology and Climate Forecasting
HyperbolicDist
The hyperbolic distribution
HyperbolicDist
The hyperbolic distribution
hyperdirichlet
A generalization of the Dirichlet distribution
hyperdraw
Visualizing Hypergaphs
hyper.fit
Generic N-Dimensional Hyperplane Fitting with Heteroscedastic Covariant Errors and Intrinsic Scatter
hypergea
Hypergeometric Tests
hypergeo
The Gauss Hypergeometric Function
hypergraph
A package providing hypergraph data structures
hypergsplines
Bayesian model selection with penalised splines and hyper-g prior
hyperSMURF
Hyper-Ensemble Smote Undersampled Random Forests
hyperSpec
Work with Hyperspectral Data, i.e. Spectra + Meta Information (Spatial, Time, Concentration, ...)
hyperSpec
Work with Hyperspectral Data, i.e. Spectra + Meta Information (Spatial, Time, Concentration, ...)
hyperSpecGUI
Graphical interface for hyperSpec package, includes interactive plots
hypervolume
High-Dimensional Kernel Density Estimation and Geometry Operations
hyphenatr
Tools to Hyphenate Strings Using the 'Hunspell' Hyphenation Library
HyPhy
Macroevolutionary phylogentic analysis of species trees and gene trees
hypoparsr
Multi-Hypothesis CSV Parser
hypothesestest
Confidence Intervals and Tests of Statistical Hypotheses
hypothesisr
Wrapper for the 'Hypothes.is' Web Annotation Service
hysteresis
Tools for Modeling Rate-Dependent Hysteretic Processes and Ellipses
hzar
Hybrid Zone Analysis using R
IalsaSynthesis
Synthesizing Information Across Collaborating Research
IAPWS95
Thermophysical Properties of Water and Steam
IASD
Model Selection for Index of Asymmetry Distribution
iASeq
iASeq: integrating multiple sequencing datasets for detecting allele-specific events
IAT
Cleaning and Visualizing Implicit Association Test (IAT) Data
IATscores
Implicit Association Test Scores Using Robust Statistics
iBATCGH
Integrative Bayesian Analysis of Transcriptomic and CGH Data
iBBiG
Iterative Binary Biclustering of Genesets
ibd
INCOMPLETE BLOCK DESIGNS
IBData
IB Real-time Data package
IBDhaploRtools
Functions for the Analysis of IBD Haplo Output
IBDhaploRtools
Functions for the Analysis of IBD Haplo Output.
IBDlabels
Convert between different IBD-state labelling schemes
IBDLabels
Convert Between Different IBD-State Labelling Schemes
IBDLabels
Convert Between Different IBD-State Labelling Schemes.
ibdreg
Regression Methods for IBD Linkage With Covariates
IBDsim
Simulation of Chromosomal Regions Shared by Family Members
ibeemd
Irregular-lattice based ensemble empirical mode decomposition
ibelief
Belief Function Implementation
ibh
Interaction Based Homogeneity for Evaluating Gene Lists
IBHM
Approximation using the IBHM method
ibm
Individual Based Models in R
ibmcraftr
Toolkits to Develop Individual-Based Models in Infectious Disease
ibmdbR
IBM in-Database Analytics for R
ibmpm
Individual-based metapopulation model
iBMQ
integrated Bayesian Modeling of eQTL data
Iboot
Iboot: iterated bootstrap tests and confidence sets.
ibr
Iterative Bias Reduction
IBrokers
R API to Interactive Brokers Trader Workstation
iBUGS
An Interface to WinBUGS/OpenBUGS/JAGS by gWidgets
iC10
A Copy Number and Expression-Based Classifier for Breast Tumours
iC10TrainingData
Training datasets for iC10 package.
IC2
Inequality and Concentration Indices and Curves
ic50
Standardized high-throughput evaluation of cell-based compound screens
ica
Independent Component Analysis
ica4fts
ica4fts package
ICAFF
Imperialist Competitive Algorithm
icamix
Estimation of ICA Mixture Models
icaOcularCorrection
Independent Components Analysis (ICA) based artifact correction.
ICAOD
Imperialist Competitive Algorithm for Optimal Designs
icapca
Mixed ICA/PCA
iCARE
A Tool for Individualized Coherent Absolute Risk Estimation (iCARE)
icarus
Calibrates and Reweights Units in Samples
icav
IC-ac
ICBayes
Bayesian Semiparametric Models for Interval-Censored Data
ICC
Facilitating Estimation of the Intraclass Correlation Coefficient
ICC
Functions facilitating the estimation of the Intraclass Correlation Coefficient
iccbeta
Multilevel model intraclass correlation for slope heterogeneity
ICC.Sample.Size
Calculation of Sample Size and Power for ICC
icd
Tools for Working with ICD-9 and ICD-10 Codes, and Finding Comorbidities
icd9
Tools for Working with ICD-9 Codes, and Finding Comorbidities
icdGLM
EM by the Method of Weights for Incomplete Categorical Data in Generlized Linear Models
ICE
Iterated Conditional Expectation
ICEbox
Individual Conditional Expectation Plot Toolbox
ICEinfer
Incremental Cost-Effectiveness (ICE) Statistical Inference from Two Unbiased Samples
icenReg
Regression Models for Interval Censored Data
Icens
NPMLE for Censored and Truncated Data
icensmis
Study Design and Data Analysis in the Presence of Error-Prone Diagnostic Tests and Self-Reported Outcomes
icesAdvice
Functions Related to ICES Advice
icesDatras
DATRAS Trawl Database Web Services
icesSAG
Stock Assessment Graphs Database Web Services
icesVocab
ICES Vocabularies Database Web Services
ICGE
Estimation of number of clusters and identification of atypical units
ICGOR
Fit Generalized Odds Rate Hazards Model with Interval Censored Data
iCheck
QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data
iChip
Bayesian Modeling of ChIP-chip Data Through Hidden Ising Models
ic.infer
Inequality constrained inference in linear normal situations
iClick
A Button-Based GUI for Financial and Economic Data Analysis
iCluster
Integrative clustering of multiple genomic data types
iClusterPlus
Integrative clustering of multi-type genomic data
iCOBRA
Comparison and Visualization of Ranking and Assignment Methods
icpsrdata
Reproducible Data Retrieval from the ICPSR Archive
icpsrmsda
Optimal Linearizing Transformations for Multivariate Data
icRSF
A Modified Random Survival Forest Algorithm
ICS
Tools for Exploring Multivariate Data via ICS/ICA
ICSNP
Tools for Multivariate Nonparametrics
ICsurv
A package for semiparametric regression analysis of interval-censored data
icsw
Inverse Compliance Score Weighting
idbg
R debugger
idbg
R debugger
idbr
R Interface to the US Census Bureau International Data Base API
idem
Inference in Randomized Controlled Trials with Death and Missingness
idendr0
Interactive Dendrograms
identity
Jacquard Condensed Coefficients of Identity
IdeoViz
Plots data (continuous/discrete) along chromosomal ideogram
idiogram
idiogram
idm
Incremental Decomposition Methods
IdMappingAnalysis
ID Mapping Analysis
IdMappingRetrieval
ID Mapping Data Retrieval
IDmining
Intrinsic Dimension for Data Mining
iDOS
Integrated Discovery of Oncogenic Signatures
IDPmisc
Utilities of Institute of Data Analyses and Process Design (www.idp.zhaw.ch)
IDPSurvival
Imprecise Dirichlet Process for Survival Analysis
idr
Irreproducible discovery rate
ids
Generate Random Identifiers
IDSpatialStats
Estimate Global Clustering in Infectious Disease
IDTurtle
Identify Turtles by their Plastral Biometries
iDynoR
R Analysis package for iDynoMiCS Simulation Results
ie2misc
Irucka Embry's Miscellaneous USGS Functions
ie2miscdata
Irucka Embry's Miscellaneous USGS Data Collection
ieeeround
Functions to set and get the IEEE rounding mode
iemisc
Irucka Embry's Miscellaneous Functions
iemiscdata
Irucka Embry's Miscellaneous Data Collection
iemisctext
Irucka Embry's Miscellaneous Text Collection
ifa
Independent Factor Analysis
iFad
An integrative factor analysis model for drug-pathway association inference
ifaTools
Toolkit for Item Factor Analysis with 'OpenMx'
ifctools
Italian fiscal code miscellaneous utilities
ifctools
Italian Fiscal Code ('Codice Fiscale') Utilities
IFP
Identifying Functional Polymorphisms
ifrogs
Finance routines developed by the IGIDR Finance Research Group.
ifs
Iterated Function Systems
ifs
Iterated Function Systems
ifultools
Insightful Research Tools
ifultools
Insightful Research Tools
iGasso
Statistical Tests and Utilities for Genetic Association
iGC
An integrated analysis package of Gene expression and Copy number alteration
IGIR
Integrative network Graphic Engine Interface for R
IGM.MEA
IGM MEA Analysis
IgorR
Read Binary Files Saved by 'Igor Pro' (Including 'Neuromatic' Data)
igraph
Network Analysis and Visualization
igraphdata
A Collection of Network Data Sets for the 'igraph' Package
igraphinshiny
Use 'shiny' to Demo 'igraph'
igraphtosonia
Convert iGraph graps to SoNIA .son files
ig.vancouver.2014.topcolour
Instagram 2014 Vancouver Top Colour Dataset
IHA
This package implements The Nature Conservancy's Indicators of Hydrologic Alteration software in R.
ihs
Inverse Hyperbolic Sine Distribution
IHSEP
Inhomogeneous Self-Exciting Process
IHW
Independent Hypothesis Weighting
iki.dataclim
Consistency, Homogeneity and Summary Statistics of Climatological Data
iLaplace
Improved Laplace Approximation for Integrals of Unimodal Functions
ilc
Lee-Carter Mortality Models using Iterative Fitting Algorithms
illuminaio
Parsing Illumina Microarray Output Files
ILS
Interlaboratory Study
IM
Orthogonal Moment Analysis
imad
Iteratively Re-weighted Multivariate Alteration Detection (iMAD)
imageData
Aids in Processing and Plotting Data from a Lemna-Tec Scananalyzer
imageHTS
Analysis of high-throughput microscopy-based screens
imagemap
Create html imagemaps
imager
Image Processing Library Based on 'CImg'
imagine
Imaging Engine, Tools for Application of Image Filters to Data Matrices
IMak
Item Maker
Imap
Interactive Mapping
Imetagene
A graphical interface for the metagene package
IMFData
R Interface for International Monetary Fund(IMF) Data API
imfr
Download Data from the International Monetary Fund's Data API
imguR
An Imgur.com API Client Package
imguR
Share plots using the imgur.com image hosting service
IMIS
Increamental Mixture Importance Sampling
immer
Item Response Models for Multiple Ratings
ImmuneSpaceR
A Thin Wrapper around the ImmuneSpace Database
immunoassay
Functions for working with immunoassay data.
immunoClust
immunoClust - Automated Pipeline for Population Detection in Flow Cytometry
IMP
Interactive Model Performance Evaluation
imp4p
Imputation for Proteomics
IMPACT
The Impact of Items
ImpactIV
Identifying Causal Effect for Multi-Component Intervention Using Instrumental Variable Method
IMPCdata
Retrieves data from IMPC database
imPois
Imprecise Inferential Framework for Poisson Sampling Model
import
An Import Mechanism for R
ImportExport
Import and Export Data
imprProbEst
Minimum distance estimation in an imprecise probability model
ImpulseDE
Detection of DE genes in time series data using impulse models
impute
impute: Imputation for microarray data
imputeLCMD
A collection of methods for left-censored missing data imputation
imputeMDR
The Multifactor Dimensionality Reduction (MDR) Analysis for Incomplete Data
imputeMissings
Impute Missing Values in a Predictive Context
imputeMulti
Imputation Methods for Multivariate Multinomial Data
imputePSF
Impute Missing Data in Time Series Data with PSF Based Method
imputeTestbench
Test Bench for the Comparison of Imputation Methods
imputeTS
Time Series Missing Value Imputation
imputeYn
Imputing the Last Largest Censored Observation(s) Under Weighted Least Squares
in2extRemes
Into the extRemes Package
inarmix
Mixture models for longitudinal count data.
INBOtheme
Themes for ggplot2
inbreedR
Analysing Inbreeding Based on Genetic Markers
inca
Integer Calibration
incidence
Compute, Handle, Plot and Model Incidence of Dated Events
inctools
Incidence Estimation Tools
IncucyteDRC
Dose Response Curves from Incucyte Proliferation Assays
indelmiss
Insertion Deletion Analysis While Accounting for Possible Missing Data
IndependenceTests
Nonparametric tests of independence between random vectors.
indicspecies
Relationship Between Species and Groups of Sites
IndTestPP
Tests of Independence Between Point Processes in Time
inegiR
Integrate INEGI’s (Mexican Stats Office) API with R
ineq
Measuring Inequality, Concentration, and Poverty
iNEXT
Interpolation and Extrapolation for Species Diversity
InfDim
Infine-dimensional model (IDM) to analyse phenotypic variation in growth trajectories.
infeR
A pedagogical tool to teach the basics of inference in population genetics
inference
Functions to extract inferential values of a fitted model object
inference
Functions to extract inferential values of a fitted model object
InferenceSMR
Inference about the standardized mortality ratio when evaluating the effect of a screening program on survival.
inferference
Methods for Causal Inference with Interference
inflection
Finds the Inflection Point of a Curve
influence.ME
Tools for Detecting Influential Data in Mixed Effects Models
influenceR
Software Tools to Quantify Structural Importance of Nodes in a Network
influence.SEM
Case Influence in Structural Equation Models
infoDecompuTE
Information Decomposition of Two-phase Experiments
Information
Data Exploration with Information Theory (Weight-of-Evidence and Information Value)
InformationValue
Performance Analysis and Companion Functions for Binary Classification Models
InformativeCensoring
Multiple Imputation for Informative Censoring
informR
Sequence Statistics for Relational Event Models
infotheo
Information-Theoretic Measures
infra
An Infrastructure Proxy Function
infraFDTD.assist
IO Help for infraFDTD Model
infuser
A Very Basic Templating Engine
Infusion
Inference Using Simulation
infutil
Information Utility
ini
Read and Write '.ini' Files
injectoR
R Dependency Injection
INLABMA
Bayesian Model Averaging with INLA
INLABMA
Bayesian Model Averaging with INLA
inlaDevel
Development files for INLA
inline
Functions to Inline C, C++, Fortran Function Calls from R
inlinedocs
Convert inline comments to documentation
inlinedocs
Convert inline comments to documentation
inlmisc
Miscellaneous Functions for the USGS INL Project Office
InPAS
Identification of Novel alternative PolyAdenylation Sites (PAS)
inpdfr
Analyse Text Documents Using Ecological Tools
InPosition
Inference Tests for ExPosition
INPower
An R package for computing the number of susceptibility SNPs
insideRODE
insideRODE includes buildin functions with deSolve solver and C/FORTRAN interfaces to nlme, together with compiled codes.
inSilicoDb
Access to the InSilico Database
inSilicoMerging
Collection of Merging Techniques for Gene Expression Data
InSilicoVA
Probabilistic Verbal Autopsy Coding with 'InSilicoVA' Algorithm
insol
Solar Radiation
INSPEcT
Analysis of 4sU-seq and RNA-seq time-course data
InspectChangepoint
High-Dimensional Changepoint Estimation via Sparse Projection
inspectr
Storing, manipulating and analysis spectroscopy and associated data in R.
INSPIRE
Inferring Shared Modules from Multiple Gene Expression Datasets with Partially Overlapping Gene Sets
install.load
Check, Install and Load CRAN & USGS GRAN Packages
installr
Using R to Install Stuff (Such As: R, 'Rtools', 'RStudio', 'Git', and More!)
instaR
Access to Instagram API via R
insuranceData
A Collection of Insurance Datasets Useful in Risk Classification in Non-life Insurance.
int64
64 bit integer types
intamap
Procedures for Automated Interpolation
intamapInteractive
procedures for automated interpolation - methods only to be used interactively, not included in intamap package
intansv
Integrative analysis of structural variations
IntClust
Integrated Data Analysis via Clustering
IntClust
Integrated Data Analysis via Clustering
integIRTy
Integrating Multiple Modalities of High Throughput Assays Using Item Response Theory
IntegrateBs
Integration for B-Spline
IntegratedJM
Joint Modelling of the Gene-Expression and Bioassay Data, Taking Care of the Effect Due to a Fingerprint Feature
IntegratedJM
Joint Modelling of the Gene-Expression and Bioassay Data, Taking Care of the Effect Due to a Fingerprint Feature
IntegratedMRF
Integrated Prediction using Univariate and Multivariate Random Forests
Interact
Tests for marginal interactions in a 2 class response model
InteractionSet
Base Classes for Storing Genomic Interaction Data
interactionTest
Calculates Critical Test Statistics to Control False Discovery and Familywise Error Rates in Marginal Effects Plots
interactiveDisplay
Package for enabling powerful shiny web displays of Bioconductor objects
interactiveDisplayBase
Base package for enabling powerful shiny web displays of Bioconductor objects
InteractiveIGraph
interactive network analysis and visualization.
interAdapt
interAdapt
Interatrix
Compute Chi-Square Measures with Corrections
intercure
Cure Rate Estimators for Interval Censored Data
interferenceCI
Exact Confidence Intervals in the Presence of Interference
intergraph
Coercion Routines for Network Data Objects
intergraph
Coercion routines for network data objects in R
internetarchive
An API Client for the Internet Archive
interplot
Plot the Effects of Variables in Interaction Terms
Interpol
Interpolation of amino acid sequences
Interpol.T
Hourly interpolation of multiple temperature daily series
InterpretMSSpectrum
Interpreting High Resolution GC-APCI-MS Spectra
interpretR
Binary Classifier and Regression Model Interpretation Functions
InterSIM
Simulation of Inter-Related Genomic Datasets
InterVA4
Replicate and Analyse 'InterVA4'
interval
Weighted Logrank Tests and NPMLE for interval censored data
intervals
Tools for Working with Points and Intervals
intervals
Tools for working with points and intervals
interventionalDBN
Interventional Inference for Dynamic Bayesian Networks
IntLik
Numerical Integration for Integrated Likelihood
IntNMF
Integrative Clustering of Multiple Genomic Dataset
intpoint
linear programming solver by the interior point method and graphically (two dimensions)
inTrees
Interpret Tree Ensembles
intReg
Interval Regression
intReg
Interval Regression
intRegGOF
Integrated Regression Goodness of Fit
IntroCompFinR
Introduction to Computational Finance in R
introgress
methods for analyzing introgression between divergent lineages
intrval
Relational Operators for Intervals
intsvy
International Assessment Data Manager
intubate
Interface to Popular R Functions for Data Science Pipelines
inum
Interval and Enum-type Representation of Vectors
InvariantCausalPrediction
Invariant Causal Prediction
InventorymodelPackage
Inventorymodel
inveRsion
Inversions in genotype data
investr
Inverse Estimation/Calibration Functions
invgamma
The Inverse Gamma Distribution
invGauss
Threshold regression that fits the (randomized drift) inverse Gaussian distribution to survival data.
invLT
Inversion of Laplace-Transformed Functions
io
A Unified Framework for Input-Output Operations in R
ioncopy
Calling Copy Number Alterations in Amplicon Sequencing Data
ionflows
Calculate the Number of Required Flows for Semiconductor Sequencing
IONiseR
Quality Assessment Tools for Oxford Nanopore MinION data
ionr
Test for Indifference of Indicator
iontree
Data management and analysis of ion trees from ion-trap mass spectrometry
iopsych
Methods for Industrial/Organizational Psychology
iosmooth
Functions for smoothing with infinite order flat-top kernels
iotools
I/O Tools for Streaming
iPAC
Identification of Protein Amino acid Clustering
ipdmeta
Tools for subgroup analyses with multiple trial data using aggregate statistics
ipdw
Spatial Interpolation by Inverse Path Distance Weighting
ipeds
Integrated Postsecondary Education Data System (IPEDS) Access
ipeglim
Imprecise Inferential Framework on Statistical Reasoning
ipflasso
Integrative Lasso with Penalty Factors
ipfp
Fast Implementation of the Iterative Proportional Fitting Procedure in C
iplots
iPlots - interactive graphics for R
IPMpack
Builds and analyses Integral Projection Models (IPMs).
IPMpack
Builds and analyses Integral Projection Models (IPMs).
IPO
Automated Optimization of XCMS Data Processing parameters
IPPD
Isotopic peak pattern deconvolution for Protein Mass Spectrometry by template matching
ipred
Improved Predictors
ipred
Improved Predictors
iprior
Linear Regression using I-Priors
ips
Interfaces to Phylogenetic Software in R
IPSUR
Introduction to Probability and Statistics Using R
IPSUR
Introduction to Probability and Statistics Using R
IPtoCountry
Convert IP Addresses to Country Names or Full Location with Geoplotting
iptools
Manipulate, Validate and Resolve 'IP' Addresses
ipw
Estimate Inverse Probability Weights
IQCC
Improved Quality Control Charts
iqLearn
Interactive Q-Learning
iqspr
Generate Chemical Strings (SMILES) with the Inverse QSPR Model
irace
Iterated Racing for Automatic Algorithm Configuration
iRafNet
Integrative Random Forest for Gene Regulatory Network Inference
IRanges
Infrastructure for manipulating intervals on sequences
IRATER
A R Interface for the Instantaneous RATEs (IRATE) Model
IRdisplay
'Jupyter' Display Machinery
iRefR
iRefIndex Manager
iRegression
Regression Methods for Interval-Valued Variables
iRepro
Reproducibility for Interval-Censored Data
IrishDirectorates
Irish Companies' Boards from 2003 to 2013
IRISMustangMetrics
Statistics and Metrics for Seismic Data
IRISSeismic
Classes and Methods for Seismic Data Analysis
irlba
Fast Truncated SVD, PCA and Symmetric Eigendecomposition for Large Dense and Sparse Matrices
irr
Various Coefficients of Interrater Reliability and Agreement
irt
irt. Spady's Item Response Model
irtDemo
Item Response Theory Demo Collection
irtoys
A Collection of Functions Related to Item Response Theory (IRT)
IRTpp
Estimating IRT Parameters using the IRT Methodology
irtProb
Utilities and Probability Distributions Related to Multidimensional Person Item Response Models
irtrees
Estimation of Tree-Based Item Response Models
IRTShiny
Item Response Theory via Shiny
isa2
The Iterative Signature Algorithm
ISBF
Iterative Selection of Blocks of Features - ISBF
isdals
Provides datasets for Introduction to Statistical Data Analysis for the Life Sciences
ISDA.R
interval symbolic data analysis for R
isdparser
Parse 'NOAA' Integrated Surface Data Files
iSeq
Bayesian Hierarchical Modeling of ChIP-seq Data Through Hidden Ising Models
IsingFit
Fitting Ising Models Using the ELasso Method
isingLenzMC
Monte Carlo for Classical Ising Model
IsingSampler
Sampling Methods and Distribution Functions for the Ising Model
island
Stochastic Island Biogeography Theory Made Easy
ISLR
Data for An Introduction to Statistical Learning with Applications in R
ismev
An Introduction to Statistical Modeling of Extreme Values
Iso
Functions to Perform Isotonic Regression
isobar
Analysis and quantitation of isobarically tagged MSMS proteomics data
IsoCI
Confidence intervals for current status data based on transformations and bootstrap.
isocir
Isotonic Inference for Circular data
ISOcodes
Selected ISO Codes
IsoGene
Order-Restricted Inference for Microarray Experiments
IsoGene
Order-Restricted Inference for Microarray Experiments
IsoGeneGUI
A graphical user interface to conduct a dose-response analysis of microarray data
IsoGeneGUI
A graphical user interface to conduct a dose-response analysis of microarray data
IsolationForest
Isolation Forest
ISoLDE
Integrative Statistics of alleLe Dependent Expression
isomiRs
Analyze isomiRs and miRNAs from small RNA-seq
isopam
Isopam (Clustering)
isopat
Calculation of isotopic pattern for a given molecular formula
isoph
Isotonic Proportional Hazards Model
IsoplotR
Statistical Toolbox for Radiometric Geochronology
ISOpureR
Deconvolution of Tumour Profiles
IsoriX
Isoscape Computation and Inference of Spatial Origins using Mixed Models
IsoSpecR
An R Interface to the IsoSpec Algorithm
isotone
Active Set and Generalized PAVA for Isotone Optimization
isotone
Active Set and Generalized PAVA for Isotone Optimization
isotonic.pen
Penalized Isotonic Regression in one and two dimensions
IsotopeR
Stable Isotope Mixing Model
ISOweek
Week of the year and weekday according to ISO 8601
ISR3
Iterative Sequential Regression
issb
R code associated with the book chapter "Simulation of stochastic kinetic models"
isuR
Introducing statistics using R
isva
Independent Surrogate Variable Analysis
ISwR
Introductory Statistics with R
ITALICS
ITALICS
itcSegment
Individual Tree Crowns Segmentation
ITEMAN
Classical Item Analysis
iteRates
Parametric rate comparison
iterativeBMA
The Iterative Bayesian Model Averaging (BMA) algorithm
iterativeBMAsurv
The Iterative Bayesian Model Averaging (BMA) Algorithm For Survival Analysis
iterators
Provides Iterator Construct for R
iterators
Provides Iterator Construct for R
iterLap
Approximate probability densities by iterated Laplace Approximations
iterpc
Efficient Iterator for Permutations and Combinations
itertools
Iterator Tools
itertools
Iterator Tools
itertools2
itertools2: Functions creating iterators for efficient looping
ITGM
Individual Tree Growth Modeling
ithir
Functions and Algorithms Specific to Pedometrics
itree
Tools for classification and regression trees, with an emphasis on interpretability.
its
Irregular Time Series
itsadug
Interpreting Time Series and Autocorrelated Data Using GAMMs
itsmr
Time series analysis package for students
IUPS
Incorporating Uncertainties in Propensity Scores
IVAS
Identification of genetic Variants affecting Alternative Splicing
ivbma
Bayesian Instrumental Variable Estimation and Model Determination via Conditional Bayes Factors
ivfixed
Instrumental fixed effect panel data model
ivlewbel
Uses heteroscedasticity to estimate mismeasured and endogenous regressor models
ivmodel
Statistical Inference and Sensitivity Analysis for Instrumental Variables Model
ivpack
Instrumental Variable Estimation.
ivpanel
Instrumental Panel Data Models
ivprobit
Instrumental variables probit model
iWeigReg
Improved methods for causal inference and missing data problems
iWISA
Wavelet-Based Index of Storm Activity
jaatha
Simulation-Based Maximum Likelihood Parameter Estimation
jackknifeKME
Jackknife Estimates of Kaplan-Meier Estimators or Integrals
jackstraw
Statistical Inference of Variables Driving Systematic Variation
jacobi
Jacobi Rotations
JacobiEigen
Classical Jacobi Eigensolution Algorithm
jacpop
Jaccard Index for Population Structure Identification
JADE
Blind Source Separation Methods Based on Joint Diagonalization and Some BSS Performance Criteria
jagsUI
A Wrapper Around 'rjags' to Streamline 'JAGS' Analyses
JAGUAR
Joint Analysis of Genotype and Group-Specific Variability Using a Novel Score Test Approach to Map Expression Quantitative Trait Loci (eQTL)
james.analysis
Analysis Tools for the 'JAMES' Framework
janeaustenr
Jane Austen's Complete Novels
janitor
Simple Tools for Examining and Cleaning Dirty Data
JASPAR
R modules for JASPAR databases: a collection of transcription factor DNA-binding preferences, modeled as matrices.
JavaGD
Java Graphics Device
JBTools
Misc Small Tools and Helper Functions for Other Code of J. Buttlar
JBTools
Misc Small Tools and Helper Functions for Other Code of J. Buttlar
JDEoptim
j-Differential Evolution Optimization
jetset
One-to-One Gene-Probeset Mapping for Affymetrix Human Microarrays
JGEE
Joint Generalized Estimating Equation Solver
JGL
Performs the Joint Graphical Lasso for sparse inverse covariance estimation on multiple classes
JGR
JGR - Java GUI for R
jiebaR
Chinese Text Segmentation
jiebaRD
Chinese Text Segmentation Data for jiebaR Package
jjplot
The jjplot plotting library for making beautiful plots fast and simple.
JM
Joint Modeling of Longitudinal and Survival Data
JMbayes
Joint Modeling of Longitudinal and Time-to-Event Data under a Bayesian Approach
jmcm
Joint Mean-Covariance Models using 'Armadillo' and S4
JMdesign
Joint Modeling of Longitudinal and Survival Data - Power Calculation
jmetrik
Tools for Interacting with 'jMetrik'
Jmisc
Julian Miscellaneous Function
jmosaics
Joint analysis of multiple ChIP-Seq data sets
jmotif
Time Series Analysis Toolkit Based on Symbolic Aggregate Dicretization, i.e. SAX
jmuOutlier
Permutation Tests for Nonparametric Statistics
jobqueue
Generic Asynchronous Job Queue
jocre
Joint Confidence Regions
joda
JODA algorithm for quantifying gene deregulation using knowledge
Johnson
Johnson Transformation
JohnsonDistribution
Johnson Distribution
joineR
Joint modelling of repeated measurements and time-to-event data
joint.Cox
Penalized Likelihood Estimation and Dynamic Prediction under the Joint Frailty-Copula Models Between Tumour Progression and Death for Meta-Analysis
jointDiag
Joint Approximate Diagonalization of a set of square matrices
JointModel
Semiparametric Joint Models for Longitudinal and Counting Processes
jointNmix
Joint N-Mixture Models for Site-Associated Species
jointPm
Risk estimation using the joint probability method
JointRegBC
Joint Modelling of Mixed Correlated Binary and Continuous Responses : A Latent Variable Approach
jointseg
Joint segmentation of multivariate (copy number) signals
joinXL
Perform Joins or Minus Queries on 'Excel' Files
jomo
Multilevel Joint Modelling Multiple Imputation
JOP
Joint Optimization Plot
JoSAE
Functions for some Unit-Level Small Area Estimators and their Variances
jose
Javascript Object Signing and Encryption
JOUSBoost
Implements Under/Oversampling for Probability Estimation
jpeg
Read and write JPEG images
JPEN
Covariance and Inverse Covariance Matrix Estimation Using Joint Penalty
jpmesh
Utilities for Japanese Mesh Code
jpndistrict
Create Japanese Administration Area and Office Maps
JPSurv
Methods for population-based cancer survival analysis
jqr
Client for 'jq', a JSON Processor
JRF
Joint Random Forest (JRF) for the Simultaneous Estimation of Multiple Related Networks
jrich
Jack-Knife Support for Evolutionary Distinctiveness Indices I and W
jrvFinance
Basic Finance; NPV/IRR/Annuities/Bond-Pricing; Black Scholes
js
Tools for Working with JavaScript in R
JSM
Semiparametric Joint Modeling of Survival and Longitudinal Data
jSonarR
jSonar Analytics Platform API for R
jsonlite
A Robust, High Performance JSON Parser and Generator for R
jsonvalidate
Validate 'JSON'
jss
Journal of Statistical Software Utilities
jtGWAS
Efficient Jonckheere-Terpstra Test Statistics
jtrans
Johnson Transformation for Normality
jug
A Simple Web Framework for R
Julia
Fractal Image Data Generator
JunctionSeq
JunctionSeq: A Utility for Detection of Differential Exon and Splice-Junction Usage in RNA-Seq data
junr
Access Open Data Through the Junar API
jvnVaR
Value at Risk
JWileymisc
Miscellaneous Utilities and Functions
jwutil
Tools for Data Manipulation and Testing
kamila
Methods for Clustering Mixed-Type Data
KANT
Package to identify and sort genes overexpressed
kantorovich
Kantorovich Distance Between Probability Measures
KappaGUI
GUI for Cohen's and Fleiss' Kappa
kappalab
Non-Additive Measure and Integral Manipulation Functions
kappaSize
Sample Size Estimation Functions for Studies of Interobserver Agreement
KappaV
Calculates "vectorial Kappa", an index of congruence between patchy mosaics.
kaps
K-Adaptive Partitioning for Survival data
karaoke
Remove Vocals from a Song
KATforDCEMRI
Kinetic analysis and visualization of DCE-MRI data.
kcirt
k-Cube Thurstonian IRT Models
KCsmart
Multi sample aCGH analysis package using kernel convolution
kdecopula
Kernel Smoothing for Bivariate Copula Densities
kdetrees
Nonparametric method for identifying discordant phylogenetic trees
kebabs
Kernel-Based Analysis Of Biological Sequences
kedd
Kernel Estimator and Bandwidth Selection for Density and Its Derivatives
keep
Arrays with Better Control over Dimension Dropping
KEGGgraph
KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor
KEGGlincs
Visualize all edges within a KEGG pathway and overlay LINCS data [option]
keggorthology
graph support for KO, KEGG Orthology
KEGGprofile
An annotation and visualization package for multi-types and multi-groups expression data in KEGG pathway
KEGGREST
Client-side REST access to KEGG
kehra
Collect, Assemble and Model Air Pollution, Weather and Health Data
kelvin
Calculate Solutions to the Kelvin Differential Equation using Bessel Functions
Kendall
Kendall rank correlation and Mann-Kendall trend test
kequate
The Kernel Method of Test Equating
kerdiest
Nonparametric kernel estimation of the distribution function. Bandwidth selection and estimation of related functions.
KERE
Expectile Regression in Reproducing Kernel Hilbert Space
kergp
Gaussian Process Laboratory
kernDeepStackNet
Kernel Deep Stacking Networks
kerndwd
Distance Weighted Discrimination (DWD) and Kernel Methods
kernelFactory
Kernel Factory: An Ensemble of Kernel Machines
Kernelheaping
Kernel Density Estimation for Heaped and Rounded Data
KernelKnn
Kernel k Nearest Neighbors
kernlab
Kernel-Based Machine Learning Lab
kernscr
Kernel Machine Score Test for Semi-Competing Risks
KernSmooth
Functions for Kernel Smoothing Supporting Wand & Jones (1995)
KernSmoothIRT
Nonparametric Item Response Theory
keyplayer
Locating Key Players in Social Networks
keypress
Wait for a Key Press in a Terminal
keyringr
Decrypt Passwords from Gnome Keyring and Windows Data Protection API
KFAS
Kalman Filter and Smoother for Exponential Family State Space Models
kfigr
Integrated Code Chunk Anchoring and Referencing for R Markdown Documents
KFKSDS
Kalman Filter, Smoother and Disturbance Smoother
khb
KHB: Comparing nonlinear regression models
kimisc
Kirill's Miscellaneous Functions
kimisc
Kirill's miscellaneous functions
kimod
A k-tables approach to integrate multiple Omics-Data
kin.cohort
Analysis of Kin-Cohort Studies
kineticF
Framework for the Analysis of Kinetic Visual Field Data
kinfit
Routines for Fitting Kinetic Models to Chemical Degradation Data
kinfit
Routines for Fitting Kinetic Models to Chemical Degradation Data
kinn
An Implementation of 'kinn' Algorithm, a Graph Based Regression Model
kinship2
Pedigree Functions
kissmig
a Keep It Simple Species Migration Model
kitagawa
Spectral response of water wells to harmonic strain and pressure
kknn
Weighted k-Nearest Neighbors
klaR
Classification and visualization
klaR
Classification and visualization
klausuR
Multiple Choice Test Evaluation
klausuR
Multiple Choice Test Evaluation
klin
Linear equations with Kronecker structure
kmc
Kaplan-Meier Estimator with Constraints for Right Censored Data -- a Recursive Computational Algorithm
km.ci
Confidence intervals for the Kaplan-Meier estimator
kmconfband
Kaplan-Meier Simultaneous Confidence Band for the Survivor Function
KMDA
Kernel-Based Metabolite Differential Analysis
kmeans.ddR
Distributed k-Means for Big Data using 'ddR' API
kmeansstep
stepwise k-means cluster model selection
Kmer
Computes a matrix of K-mer counts.
kmi
Kaplan-Meier multiple imputation for the analysis of cumulative incidence functions in the competing risks setting
Kmisc
Kevin Miscellaneous
kml
K-Means for Longitudinal Data
kml3d
K-Means for Joint Longitudinal Data
kmlcov
Clustering longitudinal data using the likelihood as a metric of distance
kmlShape
K-Means for Longitudinal Data using Shape-Respecting Distance
kmndirs
k-Mean-Directions Algorithm
kmodR
K-Means with Simultaneous Outlier Detection
KMsurv
Data sets from Klein and Moeschberger (1997), Survival Analysis
knapsack
Knapsack Routines
KnapsackSampling
Generate Feasible Samples of a Knapsack Problem
knitcitations
Citations for 'Knitr' Markdown Files
knitLatex
'Knitr' Helpers - Mostly Tables
knitr
A General-Purpose Package for Dynamic Report Generation in R
knitrBootstrap
Knitr Bootstrap Framework
knncat
Nearest-neighbor Classification with Categorical Variables
knnGarden
Multi-distance based k-Nearest Neighbors
knnIndep
Independence tests and benchmarks
KnockKnockJokes
Knock-Knock Jokes
knockoff
Knockoff Filter for Controlling the False Discovery Rate
knotR
Knot Diagrams using Bezier Curves
kntnr
R Client for 'kintone' API
kobe
Tools for the provision of scientific fisheries management advice
KODAMA
Knowledge Discovery by Accuracy Maximization
kofnGA
A Genetic Algorithm for Fixed-Size Subset Selection
KOGMWU
Functional Summary and Meta-Analysis of Gene Expression Data
kohonen
Supervised and Unsupervised Self-Organising Maps
kokudosuuchi
R Interface to e-Stat API
kolmim
An Improved Evaluation of Kolmogorov's Distribution
KoNLP
Korean NLP Package
koRpus
An R Package for Text Analysis
KoulMde
Koul's Minimum Distance Estimation in Linear Regression and Autoregression Model by Coordinate Descent Algorithm
Kpart
Cubic Spline Fitting with Knot Selection
kpodclustr
Method for Clustering Partially Observed Data
kriens
Continuation Passing Style Development
kriging
Ordinary Kriging
KrigInv
Kriging-based Inversion for Deterministic and Noisy Computer Experiments
KRLS
Kernel-based Regularized Least squares (KRLS)
krm
Kernel Based Regression Models
ks
Kernel Smoothing
kSamples
K-Sample Rank Tests and their Combinations
KScorrect
Lilliefors-Corrected Kolmogorov-Smirnoff Goodness-of-Fit Tests
KSD
Goodness-of-Fit Tests using Kernelized Stein Discrepancy
kselection
Selection of K in K-Means Clustering
ksrlive
Identify Kinase Substrate Relationships Using Dynamic Data
kst
Knowledge Space Theory
ks.test
Proposed Revision to stats::ks.test()
ktsolve
Configurable function for solving families of nonlinear equations
ktspair
k-Top Scoring Pairs for Microarray Classification
kulife
Datasets and functions from the (now non-existing) Faculty of Life Sciences, University of Copenhagen
kwb.hantush
Calculation of Groundwater Mounding Beneath an Infiltration Basin
kyotil
Utility Functions by Youyi, Krisz and Others
kza
Kolmogorov-Zurbenko Adaptive Filters
kzfs
Multi-Scale Motions Separation with Kolmogorov-Zurbenko Periodogram Signals
kzft
Kolmogorov-Zurbenko Fourier Transform and Applications
kzs
Kolmogorov-Zurbenko Spatial Smoothing and Applications
l0ara
Sparse Generalized Linear Model with L0 Approximation for Feature Selection
L1pack
Routines for L1 Estimation
l2boost
l2boost - Friedman's boosting algorithm for regularized linear regression
labdsv
Ordination and Multivariate Analysis for Ecology
labeledLoop
Labeled Loop
labeling
Axis Labeling
labeling
Axis Labeling
labelled
Manipulating Labelled Data
labelrank
Predicting Rankings of Labels
label.switching
Relabelling MCMC Outputs of Mixture Models
labeltodendro
Convert labels or tables to a dendrogram
labeltodendro
Convert labels or tables to a dendrogram
LabourMarketAreas
Identification, Tuning, Visualisation and Analysis of Labour Market Areas
labstatR
Libreria Del Laboratorio Di Statistica Con R
labstatR
Libreria Del Laboratorio Di Statistica Con R
labstats
Data Sets for the Book "Experimental Design for Laboratory Biologists"
laeken
Estimation of indicators on social exclusion and poverty
laercio
Duncan test, Tukey test and Scott-Knott test.
LaF
Fast access to large ASCII files
laGP
Local Approximate Gaussian Process Regression
Lahman
Sean 'Lahman' Baseball Database
Lahman
Sean Lahman's Baseball Database
LakeMetabolizer
Tools for the Analysis of Ecosystem Metabolism
lakemorpho
Lake Morphometry Metrics in R
laketemps
Lake Temperatures Collected by Situ and Satellite Methods from 1985-2009
Lambda4
Collection of Internal Consistency Reliability Coefficients.
lambda.r
Modeling Data with Functional Programming
lambda.tools
Tools for Modeling Data with Functional Programming
LambertW
Probabilistic Models to Analyze and Gaussianize Heavy-Tailed, Skewed Data
lamW
Lambert-W Function
LANDD
Liquid Association for Network Dynamics Detection
landest
Landmark Estimation of Survival and Treatment Effect
landpred
Landmark Prediction of a Survival Outcome
landsat
Radiometric and topographic correction of satellite imagery
landsat8
Landsat 8 Imagery Rescaled to Reflectance, Radiance and/or Temperature
landscapeR
Categorical Landscape Simulation Facility
Langevin
Langevin Analysis in One and Two Dimensions
languageR
Data sets and functions with "Analyzing Linguistic Data: A practical introduction to statistics".
LaplaceDeconv
Laplace Deconvolution with Noisy Discrete Non-Equally Spaced Observations on a Finite Time Interval
LaplacesDemon
Complete Environment for Bayesian Inference
lapmix
Laplace Mixture Model in Microarray Experiments
lar
History of labour relations package
LARF
Local Average Response Functions for Instrumental Variable Estimation of Treatment Effects
largeList
Serialization Interface for Large List Objects
largeVis
High-Quality Visualizations of Large, High-Dimensional Datasets
lars
Least Angle Regression, Lasso and Forward Stagewise
laser
Likelihood Analysis of Speciation/Extinction Rates from Phylogenies
lasso2
L1 constrained estimation aka `lasso'
LassoBacktracking
Modelling Interactions in High-Dimensional Data with Backtracking
lassogrp
Lasso Regression including group lasso and adaptive lasso
lassoscore
High-Dimensional Inference with the Penalized Score Test
lassoshooting
L1 regularized regression (Lasso) solver using the Cyclic Coordinate Descent algorithm aka Lasso Shooting
lasvmR
A Simple Wrapper for the LASVM Solver
latdiag
Draws Diagrams Useful for Checking Latent Scales
latentnet
Latent Position and Cluster Models for Statistical Networks
LatentREGpp
Item Response Theory Implemented in R and Cpp
Laterality
Functions to Calculate Common Laterality Statistics in Primatology
latex2exp
Use LaTeX Expressions in Plots
lattice
Trellis Graphics for R
lattice
Trellis Graphics for R
latticeDensity
Density estimation and nonparametric regression on irregular regions
latticeExtra
Extra Graphical Utilities Based on Lattice
latticeExtra
Extra Graphical Utilities Based on Lattice
LatticeKrig
Multiresolution Kriging Based on Markov Random Fields
lava
Latent Variable Models
lava
Latent Variable Models
lavaan
Latent Variable Analysis
lavaan.shiny
Latent Variable Analysis with Shiny
lavaan.survey
Complex Survey Structural Equation Modeling (SEM)
lava.mixture
Mixtures of Linear Latent Variable Models
lava.tobit
LVM with censored and binary outcomes
lava.tobit
LVM with censored and binary outcomes
lawn
Client for 'Turfjs' for 'Geospatial' Analysis
lawstat
Tools for Biostatistics, Public Policy, and Law
lazy
Lazy Learning for Local Regression
lazyData
A LazyData Facility
lazyeval
Lazy (Non-Standard) Evaluation
LazyMLVA
LazyMLVA
lazyrmd
Render R Markdown Outputs Lazily
lazysql
Lazy SQL Programming
lazyWeave
LaTeX Wrappers for R Users
lba
Latent Budget Analysis for Compositional Data
LBE
Estimation of the false discovery rate.
lbfgs
Limited-memory BFGS Optimization
lbfgsb3
Limited Memory BFGS Minimizer with Bounds on Parameters
lbiassurv
Length-biased correction to survival curve estimation.
lbiassurv
Length-biased correction to survival curve estimation.
LCA
Localised Co-Dependency Analysis
LCAextend
Latent Class Analysis (LCA) with familial dependence in extended pedigrees
lcda
Latent Class Discriminant Analysis
LCFdata
Data sets for package ``LMERConvenienceFunctions''
lclGWAS
Efficient Estimation of Discrete-Time Multivariate Frailty Model Using Exact Likelihood Function for Grouped Survival Data
LCMCR
Bayesian Nonparametric Latent-Class Capture-Recapture
lcmix
Layered and chained mixture models
lcmm
Extended Mixed Models Using Latent Classes and Latent Processes
lcopula
Liouville Copulas
lctools
Local Correlation, Spatial Inequalities, Geographically Weighted Regression and Other Tools
lda
Collapsed Gibbs Sampling Methods for Topic Models
ldamatch
Selection of Statistically Similar Research Groups
ldatuning
Tuning of the Latent Dirichlet Allocation Models Parameters
LDAvis
Interactive Visualization of Topic Models
ldblock
data structures for linkage disequilibrium measures in populations
ldbod
Local Density-Based Outlier Detection
ldbounds
Lan-DeMets Method for Group Sequential Boundaries
LDcorSV
Linkage disequilibrium corrected by the structure and the relatedness
LDExplorer
Efficient Whole-Genome LD Based Haplotpe Block Recognition
LDheatmap
Graphical Display of Pairwise Linkage Disequilibria Between SNPs
ldlasso
LD LASSO Regression for SNP Association Study
LDOD
Finding Locally D-optimal optimal designs for some nonlinear and generalized linear models.
LDOD
Finding Locally D-optimal optimal designs for some nonlinear and generalized linear models.
LDPD
Probability of Default Calibration
ldr
Methods for likelihood-based dimension reduction in regression
LDRTools
Tools for Linear Dimension Reduction
ldstatsHD
Linear Dependence Statistics for High-Dimensional Data
LDtests
Exact tests for Linkage Disequilibrium and Hardy-Weinberg Equilibrium
LEA
LEA: an R package for Landscape and Ecological Association Studies
leaderCluster
Leader Clustering Algorithm
LeafAngle
Analysis and Visualization of Plant Leaf Angle Distributions
LeafArea
Rapid Digital Image Analysis of Leaf Area
leaflet
Create Interactive Web Maps with the JavaScript 'Leaflet' Library
leafletR
Interactive Web-Maps Based on the Leaflet JavaScript Library
LEANR
Finds "Local Subnetworks" Within an Interaction Network which Show Enrichment for Differentially Expressed Genes
LEAP
Constructing Gene Co-Expression Networks for Single-Cell RNA-Sequencing Data Using Pseudotime Ordering
LEAPFrOG
Likelihood Estimation of Admixture in Parents From Offspring Genotypes
leapp
latent effect adjustment after primary projection
leaps
regression subset selection
LearnBayes
Functions for Learning Bayesian Inference
learningCurve
An Implementation of Crawford's and Wright's Learning Curve Production Functions
learningr
Data and functions to accompany the book "Learning R".
learNN
Examples of Neural Networks
learnstats
An Interactive Environment for Learning Statistics
LedPred
Learning from DNA to Predict Enhancers
LeerFotos
Extrae la informacion de los metadatos de imagenes .jpg
lefse
Phylogenetic and Functional Analyses for Ecology
leiv
Bivariate Linear Errors-In-Variables Estimation
LeLogicielR
Functions and datasets to accompany the book "Le logiciel R: Maitriser le langage, Effectuer des analyses statistiques" (french)
LendingClub
A Lending Club API Wrapper
les
Identifying Differential Effects in Tiling Microarray Data
lessR
Less Code, More Results
lestat
A package for LEarning STATistics
lethal
Compute lethal doses (LD) with confidence intervals
letsR
Tools for Data Handling and Analysis in Macroecology
lettercase
Utilities for Formatting Strings with Consistent Capitalization, Word Breaks and White Space
LexisPlotR
Plot Lexis Diagrams for Demographic Purposes
lexRankr
Extractive Summarization of Text with the LexRank Algorithm
lfa
Logistic Factor Analysis for Categorical Data
lfactors
Factors with Levels
lfda
Local Fisher Discriminant Analysis
LFDR.MLE
Estimation of the Local False Discovery Rates by Type II Maximum Likelihood Estimation
lfe
Linear Group Fixed Effects
lfl
Linguistic Fuzzy Logic
lfstat
Calculation of Low Flow Statistics for Daily Stream Flow Data
lfstat
Calculation of Low Flow Statistics for Daily Stream Flow Data
lga
Tools for linear grouping analysis (LGA)
lgarch
Simulation and Estimation of Log-GARCH Models
lgcp
Log-Gaussian Cox Process
LGEWIS
Tests for Genetic Association/Gene-Environment Interaction in Longitudinal Gene-Environment-Wide Interaction Studies
LGRF
Set-Based Tests for Genetic Association in Longitudinal Studies
lgtdl
A set of methods for longitudinal data objects.
lhs
Latin Hypercube Samples
libamtrack
Computational Routines for Proton and Ion Radiotherapy
libamtrack
Computational Routines for Proton and Ion Radiotherapy
libcoin
Linear Test Statistics for Permutation Inference
LiblineaR
Linear Predictive Models Based on the LIBLINEAR C/C++ Library
LiblineaR.ACF
Linear Classification with Online Adaptation of Coordinate Frequencies
Libra
Linearized Bregman Algorithms for Generalized Linear Models
LICORS
Light Cone Reconstruction of States - Predictive State Estimation From Spatio-Temporal Data
LICurvature
Sensitivity Analysis for Case Weight in Normal Linear Regression
lifecontingencies
Financial and Actuarial Mathematics for Life Contingencies
lifecourse
Quantification of Lifecourse Fluidity
LifeHist
Life History Models of Individuals
LifeTables
Two-Parameter HMD Model Life Table System
lift
Compute the Top Decile Lift and Plot the Lift Curve
liftLRD
Wavelet Lifting Estimators of the Hurst Exponent for Regularly and Irregularly Sampled Time Series
liftr
Dockerize R Markdown Documents
LightningR
Tools for Communication with Lightning-Viz Server
lightsout
Implementation of the 'Lights Out' Puzzle Game
LIHNPSD
Poisson Subordinated Distribution
likelihood
Methods for Maximum Likelihood Estimation
likelihoodAsy
Functions for Likelihood Asymptotics
likeLTD
Tools to Evaluate DNA Profile Evidence
likert
Functions to Analyze and Visualize Likert Type Items
LIM
Linear Inverse Model examples and solution methods.
LIM
Linear Inverse Model examples and solution methods
limitplot
Jitter/CI Plot with Ordered Points Below the Limit of Detection
limma
Linear Models for Microarray Data
limmaGUI
GUI for limma package with two color microarrays
limSolve
Solving Linear Inverse Models
limSolve
Solving Linear Inverse Models
linbin
Binning and Plotting of Linearly Referenced Data
LINC
co-expression of lincRNAs and protein-coding genes
LinCal
Static Univariate Frequentist and Bayesian Linear Calibration
LindenmayeR
Functions to Explore L-Systems (Lindenmayer Systems)
LindleyR
The Lindley Distribution and Its Modifications
LinearizedSVR
Linearized Support Vector Regression
LinearRegressionMDE
Minimum Distance Estimation in Linear Regression Model
linear.tools
Manipulate Formulas and Evaluate Marginal Effects
linERR
Linear Excess Relative Risk Model
lineup
Lining Up Two Sets of Measurements
linkcomm
Tools for Generating, Visualizing, and Analysing Link Communities in Networks
LinkedMatrix
Column-Linked and Row-Linked Matrices
linkim
Linkage information based genotype imputation method
linkR
3D Lever and Linkage Mechanism Modeling
linLIR
linear Likelihood-based Imprecise Regression
linLIR
linear Likelihood-based Imprecise Regression
Linnorm
Linear model and normality based transformation method (Linnorm)
linprog
Linear Programming / Optimization
linprog
Linear Programming / Optimization
LinRegInteractive
Interactive Interpretation of Linear Regression Models
LINselect
Selection of Linear Estimators
lintools
Manipulation of Linear Systems of (in)Equalities
lintr
Static R Code Analysis
liqueueR
Implements Queue, PriorityQueue and Stack Classes
LiquidAssociation
LiquidAssociation
lira
LInear Regression in Astronomy
liso
Fitting lasso penalised additive isotone models
lisp
List-processing à la SRFI-1
lisp
List-processing à la SRFI-1
lisrelToR
Import output from LISREL into R
list
Statistical Methods for the Item Count Technique and List Experiment
listdtr
List-Based Rules for Dynamic Treatment Regimes
listenv
Environments Behaving (Almost) as Lists
LIStest
Tests of independence based on the Longest Increasing Subsequence
listless
Convert Lists to Tidy Data Frames
listviewer
'htmlwidget' for Interactive Views of R Lists
listWithDefaults
List with Defaults
littler
R at the Command-Line via 'r'
livechatR
R Wrapper for LiveChat REST API
ljr
Logistic Joinpoint Regression
llama
Leveraging Learning to Automatically Manage Algorithms
lle
Locally linear embedding
lllcrc
Local Log-linear Models for Capture-Recapture
LLSR
Data Analysis of Liquid-Liquid Systems
lm.beta
Add Standardized Regression Coefficients to lm-Objects
lm.br
Linear Model with Breakpoint
lm.br
Linear Model with Breakpoint
lmdme
Linear Model decomposition for Designed Multivariate Experiments
lme4
Linear Mixed-Effects Models using 'Eigen' and S4
lmec
Linear Mixed-Effects Models with Censored Responses
lmem.gwaser
Linear Mixed Effects Models for Genome-Wide Association Studies
lmem.qtler
Linear Mixed Effects Models for QTL Mapping for Multienvironment and Multitrait Analysis
lmeNB
Compute the Personalized Activity Index Based on a Negative Binomial Model
lmeNBBayes
Compute the Personalized Activity Index Based on a Flexible Bayesian Negative Binomial Model
lmenssp
Linear Mixed Effects Models with Non-Stationary Stochastic Processes
LMERConvenienceFunctions
Model Selection and Post-hoc Analysis for (G)LMER Models
lmeresampler
Bootstrap Methods for Nested Linear Mixed-Effects Models
lmerTest
Tests in Linear Mixed Effects Models
lmeSplines
Add smoothing spline modelling capability to nlme.
lmeSplines
Add smoothing spline modelling capability to nlme.
LMest
Latent Markov Models with and without Covariates
lmeVarComp
Testing for a subset of variance components in linear mixed models
lmf
Functions for estimation and inference of selection in age-structured populations
lmfor
Functions for Forest Biometrics
LMGene
LMGene Software for Data Transformation and Identification of Differentially Expressed Genes in Gene Expression Arrays
lmm
Linear Mixed Models
lmmlasso
Linear mixed-effects models with Lasso
lmmot
Multiple Ordinal Tobit (MOT) Model
lmms
Linear Mixed Effect Model Splines for Modelling and Analysis of Time Course Data
lmodel2
Model II Regression
lmodel2
Model II Regression
lmom
L-moments
lmomco
L-Moments, Censored L-Moments, Trimmed L-Moments, L-Comoments, and Many Distributions
Lmoments
L-Moments and Quantile Mixtures
lmomRFA
Regional frequency analysis using L-moments
lmPerm
Permutation Tests for Linear Models
lmridge
Linear Ridge Regression with Ridge Penalty and Ridge Statistics
lmsqreg
LMS (Cole-Green Stat in Med 1992 quantile regression)
lmSubsets
Exact linear subset regression
lmSupport
Support for Linear Models
lmtest
Testing Linear Regression Models
lnar
Inference for stochastic kinetic genetic networks.
LncDM
The Different Methylation Sites, Elements and Regions of lncRNA
LncMod
Predicting Modulator and Functional/Survival Analysis
LncPath
Identifying the Pathways Regulated by LncRNA Sets of Interest
LncPriCNet
Prioritizing Candidate LncRNAs Based on a Composite Multi-Level Network
LNIRT
LogNormal Response Time Item Response Theory Models
loa
Lattice Options and Add-Ins
loa
Lattice Options and Add-Ins
LOBSTAHS
Lipid and Oxylipin Biomarker Screening through Adduct Hierarchy Sequences
localdepth
Local Depth
localEM
Nonparametric Modelling of Spatial Risk for Areal Disease Data
localgauss
Estimating Local Gaussian Parameters
localsolver
R API to LocalSolver
locClass
Collection of Local Classification Methods
locClassData
Collection of Artificial Classification Problems
locfdr
Computes Local False Discovery Rates
LocFDRPois
Functions for Performing Local FDR Estimation when Null and Alternative are Poisson
locfit
Local Regression, Likelihood and Density Estimation.
locits
Test of Stationarity and Localized Autocovariance
Lock5Data
Datasets for "Statistics: UnLocking the Power of Data"
Lock5Data
Datasets for "Statistics: UnLocking the Power of Data"
Lock5withR
Datasets for 'Statistics: Unlocking the Power of Data'
locpol
Kernel local polynomial regression
lodGWAS
Genome-Wide Association Analysis of a Biomarker Accounting for Limit of Detection
loe
Local Ordinal Embedding
log10
Decimal log plotting in two and three dimensions
log4r
A simple logging system for R, based on log4j.
logbin
Relative Risk Regression Using the Log-Binomial Model
LogConcDEAD
Log-concave Density Estimation in Arbitrary Dimensions
logconcens
Maximum likelihood estimation of a log-concave density based on censored data
logcondens
Estimate a Log-Concave Probability Density from Iid Observations
logcondens.mode
Compute MLE of Log-Concave Density on R with Fixed Mode, and Perform Inference for the Mode.
logcondiscr
Estimate a Log-Concave Probability Mass Function from Discrete i.i.d. Observations
logconPH
CoxPH Model with Log Concave Baseline Distribution
logging
R logging package
logging
R logging package
LogicForest
Logic Forest
logicFS
Identification of SNP Interactions
LOGICOIL
LOGICOIL: multi-state prediction of coiled-coil oligomeric state.
LogicOpt
Truth Table Logic Optimizer
LogicReg
Logic Regression
logistf
Firth's bias reduced logistic regression
logistic4p
Logistic Regression with Misclassification in Dependent Variables
logisticDx
Diagnostic tests for logistic regression models
LogisticDx
Diagnostic Tests for Models with a Binomial Response
LogisticDx
Diagnostic Tests for Models with a Binomial Response
logisticPCA
Binary Dimensionality Reduction
LOGIT
Functions, Data and Code for Binary and Binomial Data
logitchoice
Fitting l2-regularized logit choice models via generalized gradient descent
LogitNet
Infer network based on binary arrays using regularized logistic regression
logitnorm
Functions for the Logitnormal Distribution
logitnorm
Functions for the Logitnormal Distribution
logitT
logit-t Package
loglognorm
Double log normal distribution functions
loglognorm
Double log normal distribution functions
logmult
Log-Multiplicative Models, Including Association Models
logopt
Log optimal (universal) portfolios
LogrankA
Logrank Test for Aggregated Survival Data
logspline
Logspline Density Estimation Routines
lokern
Kernel Regression Smoothing with Local or Global Plug-in Bandwidth
lokern
Kernel Regression Smoothing with Local or Global Plug-in Bandwidth
lol
Lots Of Lasso
LOLA
Location overlap analysis for enrichment of genomic ranges
lomb
Lomb-Scargle Periodogram
longCatEDA
Package for Plotting Categorical Longitudinal and Time-Series Data
longclust
Model-Based Clustering and Classification for Longitudinal Data
longitudinal
Analysis of Multiple Time Course Data
longitudinalData
Longitudinal Data
longmemo
Statistics for Long-Memory Processes (Jan Beran) -- Data and Functions
longpower
Sample Size Calculations for Longitudinal Data
longurl
Expand Short URLs Using the 'URL-Expander' API
loo
Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian Models
lookupTable
Look-Up Tables using S4
loop
loop decomposition of weighted directed graphs for life cycle analysis, providing flexbile network plotting methods, and analyzing food chain properties in ecology
LoopAnalyst
A Collection of Tools to Conduct Levins' Loop Analysis
loopr
Uses an Archive to Amend Previous Stages of a Pipe using Current Output
lordif
Logistic Ordinal Regression Differential Item Functioning using IRT
lorec
LOw Rand and sparsE Covariance matrix estimation
loret
Logistic Regression Trees for Multinomial and Ordinal Responses
LOST
Missing Morphometric Data Simulation and Estimation
LotkasLaw
Runs Lotka's Law which is One of the Special Applications of Zipf's Law
LowMACA
LowMACA - Low frequency Mutation Analysis via Consensus Alignment
lowmemtkmeans
Low Memory Use Trimmed K-Means
LowRankQP
Low Rank Quadratic Programming
lpbrim
LP-BRIM Bipartite Modularity
lpc
Lassoed principal components for testing significance of features
LPCM
Local Principal Curve Methods
LPE
Methods for analyzing microarray data using Local Pooled Error (LPE) method
LPEadj
A correction of the local pooled error (LPE) method to replace the asymptotic variance adjustment with an unbiased adjustment based on sample size.
lpint
Local polynomial estimators of intensity function or its derivatives
LPM
Linear Parametric Models Applied to Hydrological Series
lpme
Local Polynomial Estimator in Measurement Error Models
LPmerge
Merging linkage maps by linear programming
lpmodeler
Modeler for linear programs (LP) and mixed integer linear programs (MILP)
lpNet
Linear Programming Model for Network Inference
LPR
Lasso and Partial Ridge
lpridge
Local Polynomial (Ridge) Regression
lpridge
Local Polynomial (Ridge) Regression
LPS
Linear Predictor Score, for Binary Inference from Multiple Continuous Variables
lpSolve
Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer Programs
lpSolveAPI
R Interface to 'lp_solve' Version 5.5.2.0
lpSolveAPI
R Interface to 'lp_solve' Version 5.5.2.0
LPStimeSeries
Learned Pattern Similarity and Representation for Time Series
lpsymphony
Symphony integer linear programming solver in R
LPTime
LP Nonparametric Approach to Non-Gaussian Non-Linear Time Series Modelling
lqa
Penalized Likelihood Inference for GLMs
lqmm
Linear Quantile Mixed Models
lqmm
Linear Quantile Mixed Models
lqr
Robust Linear Quantile Regression
LRcontrast
Dose Response Signal Detection under Model Uncertainty
lrequire
Sources an R "Module" with Caching & Encapsulation, Returning Exported Vars
lrgs
Linear Regression by Gibbs Sampling
lrmest
Different Types of Estimators to Deal with Multicollinearity
LRTH
A Likelihood Ratio Test Accounting for Genetic Heterogeneity
LS2W
Locally stationary two-dimensional wavelet process estimation scheme
LS2Wstat
A Multiscale Test of Spatial Stationarity for LS2W processes
lsa
Latent Semantic Analysis
LSAfun
Applied Latent Semantic Analysis (LSA) Functions
LSAmitR
Datensätze und Übungsmaterial zu 'Large-Scale Assessment mit R'
lsbclust
Least-Squares Bilinear Clustering for Three-Way Data
LSC
Local Statistical Complexity - Automatic Pattern Discovery in Spatio-Temporal Data
LSD
Lots of Superior Depictions
LSDinterface
Reading LSD Results (.res) Files
lsdv
Least square dummy variable regression
lsei
Solving Least Squares Problems under Equality/Inequality Constraints
lsgl
Linear Sparse Group Lasso
lshorth
The Length of the Shorth
lshorth
The Length of the Shorth
lsl
Latent Structure Learning
lsmeans
Least-Squares Means
lsmeans
Calculates the lsmeans and their variances for lm, gls,lme,mer,lmer and glmer models
LSMonteCarlo
American options pricing with Least Squares Monte Carlo method
LSPFP
Lysate and Secretome Peptide Feature Plotter
lspls
LS-PLS Models
LSPM
The Leverage Space Portfolio Modeler
lsr
Companion to "Learning Statistics with R"
lss
the accelerated failure time model to right censored data based on least-squares principle
LSTS
Locally Stationary Time Series
ltbayes
Simulation-Based Bayesian Inference for Latent Traits of Item Response Models
ltm
Latent Trait Models under IRT
ltmle
Longitudinal Targeted Maximum Likelihood Estimation
LTPDvar
LTPD and AOQL Plans for Acceptance Sampling Inspection by Variables
LTR
Perform LTR analysis on microarray data
LTRCtrees
Survival Trees to Fit Left-Truncated and Right-Censored Survival Data
ltsa
Linear Time Series Analysis
ltsbase
Ridge and Liu Estimates based on LTS (Least Trimmed Squares) Method
ltsk
Local Time Space Kriging
lubridate
Make Dealing with Dates a Little Easier
luca
Likelihood inference from case-control data Under Covariate Assumptions (LUCA)
lucid
Printing Floating Point Numbers in a Human-Friendly Format
luck
Generalized iLUCK models
lucr
Currency Formatting and Conversion
lulcc
Land Use Change Modelling in R
lumendb
Lumen Database API Client
lumi
BeadArray Specific Methods for Illumina Methylation and Expression Microarrays
Luminescence
Comprehensive Luminescence Dating Data Analysis
lunar
Lunar Phase & Distance, Seasons and Other Environmental Factors
luzlogr
Lightweight Logging for R Scripts
lvm4net
Latent Variable Models for Networks
LVMMCOR
A Latent Variable Model for Mixed Continuous and Ordinal Responses
lvnet
Latent Variable Network Modeling
lvplot
Letter Value 'Boxplots'
LVSmiRNA
LVS normalization for Agilent miRNA data
LW1949
An Automated Approach to Evaluating Dose-Effect Experiments Following Litchfield and Wilcoxon (1949)
lxb
Fast LXB File Reader
lymphclon
Accurate Estimation of Clonal Coincidences and Abundances from Biological Replicates
LymphoSeq
Analyze high-throughput sequencing of T and B cell receptors
M3
Reading M3 files
M3D
Identifies differentially methylated regions across testing groups
M3Drop
Michaelis-Menten Modelling of Dropouts in single-cell RNASeq
M4comp
Data from the M4 Time Series Forecasting Competition
m4fe
Models for Financial Economics
maanova
Tools for analyzing Micro Array experiments
maboost
Binary and Multiclass Boosting Algorithms
MAc
Meta-Analysis with Correlations
macat
MicroArray Chromosome Analysis Tool
macc
Mediation Analysis of Causality under Confounding
machina
Machina Time Series Generation and Backtesting
machQA
QA Machina Indicators
macleish
Retrieve Data from MacLeish Field Station
MAclinical
Class prediction based on microarray data and clinical parameters
maCorrPlot
Visualize artificial correlation in microarray data
MAd
Meta-Analysis with Mean Differences
mada
Meta-Analysis of Diagnostic Accuracy
mada
Meta-Analysis of Diagnostic Accuracy
MADAM
This package provides some basic methods for meta-analysis
maddison
Maddison Project Database
made4
Multivariate analysis of microarray data using ADE4
madness
Automatic Differentiation of Multivariate Operations
madr
Model Averaged Double Robust Estimation
mads
Multi-Analysis Distance Sampling
MADSEQ
Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data
madsim
A Flexible Microarray Data Simulation Model
Maeswrap
Wrapper Functions for MAESTRA/MAESPA
mafs
Multiple Automatic Forecast Selection
maftools
Summarize, Analyze and Visualize MAF files
magclass
Data Class and Tools for Handling Spatial-Temporal Data
magic
create and investigate magic squares
magicaxis
Pretty Scientific Plotting with Minor-Tick and Log Minor-Tick Support
magick
Advanced Image-Processing in R
MagneticMap
Magnetic Laplacian Matrix and Magnetic Eigenmap Visualization
magrittr
A Forward-Pipe Operator for R
maGUI
A Graphical User Interface for Microarray Data Analysis
maigesPack
Functions to handle cDNA microarray data, including several methods of data analysis
mail
Sending Email Notifications from R
mailR
A Utility to Send Emails from R
MAINT.Data
Model and Analyse Interval Data
MAIT
Statistical Analysis of Metabolomic Data
makecdfenv
CDF Environment Maker
MakefileR
Create 'Makefiles' Using R
makeFlow
Visualizing Sequential Classifications
makeProject
Creates an empty package framework for the LCFD format
malani
Machine Learning Assisted Network Inference
MALDIquant
Quantitative Analysis of Mass Spectrometry Data
MALDIquantForeign
Import/Export Routines for MALDIquant
mallet
A wrapper around the Java machine learning tool MALLET
MAMA
Meta-Analysis of MicroArray
MAMI
Model Averaging and Model Selection after Multiple Imputation
MAMS
Designing multi-arm multi-stage studies
MAMSE
Calculation of Minimum Averaged Mean Squared Error (MAMSE) weights.
managelocalrepo
Manage a CRAN-Style Local Repository
MANCIE
Matrix Analysis and Normalization by Concordant Information Enhancement
mangoTraining
Mango Solutions Training Datasets
manhattanly
Interactive Q-Q and Manhattan Plots Using 'plotly.js'
manifestoR
Access and Process Data and Documents of the Manifesto Project
ManifoldOptim
An R Interface to the ROPTLIB Library for Riemannian Manifold Optimization
manipulate
Interactive Plots for RStudio
ManlyMix
Manly Mixture Modeling and Model-Based Clustering
MANOR
CGH Micro-Array NORmalization
MANOVA.RM
Analysis of Multivariate Data and Repeated Measures Designs
manta
Microbial Assemblage Normalized Transcript Analysis
MantelCorr
Compute Mantel Cluster Correlations
ManyTests
Multiple Testing Procedures of Cox (2011) and Wong and Cox (2007)
Map2NCBI
Mapping Markers to the Nearest Genomic Feature
MAPA
Multiple Aggregation Prediction Algorithm
mapdata
Extra Map Databases
mapfit
A Tool for PH/MAP Parameter Estimation
MapGAM
Mapping Smoothed Effect Estimates from Individual-Level Data
mAPKL
A Hybrid Feature Selection method for gene expression data
MAPLES
Smoothed age profile estimation
mapmisc
Utilities for Producing Maps
mapmisc
Utilities for Producing Maps
mapoland
Maps of Poland for data visualization and graphics
mapplots
Data Visualisation on Maps
mapproj
Map Projections
mapr
Visualize Species Occurrence Data
maPredictDSC
Phenotype prediction using microarray data: approach of the best overall team in the IMPROVER Diagnostic Signature Challenge
maps
Draw Geographical Maps
mapStats
Geographic Display of Survey Data Statistics
maptools
Tools for Reading and Handling Spatial Objects
maptools
Tools for Reading and Handling Spatial Objects
maptpx
MAP Estimation of Topic Models
maptree
Mapping, pruning, and graphing tree models
mapview
Interactive Viewing of Spatial Objects in R
mAr
Multivariate AutoRegressive analysis
MAR1
Multivariate Autoregressive Modeling for Analysis of Community Time-Series Data
mar1s
Multiplicative AR(1) with Seasonal Processes
march
Markov Chains
march
Markov Chains
marelac
Tools for Aquatic Sciences
marelac
Tools for Aquatic Sciences
marelacTeaching
Datasets and tutorials for use in aquatic sciences
MareyMap
Estimation of Meiotic Recombination Rates Using Marey Maps
marg
Approximate marginal inference for regression-scale models
marima
Multivariate ARIMA and ARIMA-X Analysis
markdown
'Markdown' Rendering for R
marked
Mark-Recapture Analysis for Survival and Abundance Estimation
maRketSim
Market simulator for R
markmyassignment
Automatic Marking of R Assignments
markophylo
Markov Chain Models for Phylogenetic Trees
markovchain
Easy Handling Discrete Time Markov Chains
MarkowitzR
Statistical Significance of the Markowitz Portfolio
marl
Multivariate Analysis Based on Relative Likelihoods
marmap
Import, Plot and Analyze Bathymetric and Topographic Data
marqLevAlg
An algorithm for least-squares curve fitting
marray
Exploratory analysis for two-color spotted microarray data
MARSS
Multivariate Autoregressive State-Space Modeling
mas1343
MAS1343: Introduction to statistical computing
mas2316
MAS2316: Introduction to regression and modelling
mas3321
Bayes normal linear model and basic MCMC
maSAE
Mandallaz' Model-Assisted Small Area Estimators
maSigPro
Significant Gene Expression Profile Differences in Time Course Gene Expression Data
maskBAD
Masking probes with binding affinity differences
mason
Build Data Structures for Common Statistical Analysis
MASS
Support Functions and Datasets for Venables and Ripley's MASS
MassArray
Analytical Tools for MassArray Data
MassAtChance
Implementation of the Mass at Chance models for subliminal priming accuracy data
massiR
massiR: MicroArray Sample Sex Identifier
MassSpecWavelet
Mass spectrum processing by wavelet-based algorithms
MASSTIMATE
Body Mass Estimation Equations for Vertebrates
MAST
Model-based Analysis of Single Cell Transcriptomics
MasterBayes
ML and MCMC Methods for Pedigree Reconstruction and Analysis
mastermix
Procedure for deconvolving, weight-evidence and database search using STR DNA mixtures
MAT
Multidimensional Adaptive Testing
MATA
Model-Averaged Tail Area Wald (MATA-Wald) Confidence Interval
matchBox
Utilities to compute, compare, and plot the agreement between ordered vectors of features (ie. distinct genomic experiments). The package includes Correspondence-At-the-TOP (CAT) analysis.
MatchImage
likelihood-based image id code
Matching
Multivariate and Propensity Score Matching with Balance Optimization
MatchingFrontier
Computation of the Balance - Sample Size Frontier in Matching Methods for Causal Inference
matchingMarkets
Analysis of Stable Matchings
matchingMarkets
Analysis of Stable Matchings
matchingR
Matching Algorithms in R and C++
MatchIt
MatchIt: Nonparametric Preprocessing for Parametric Casual Inference
MatchItSE
Calculates SE for Matched Samples from 'MatchIt'
MatchLinReg
Combining Matching and Linear Regression for Causal Inference
matchMulti
Optimal Multilevel Matching using a Network Algorithm
matconv
A Code Converter from the Matlab/Octave Language to R
mateable
Tools to Assess Mating Potential in Space and Time
mathgraph
Directed and undirected graphs
maticce
Mapping Transitions in Continuous Character Evolution
matie
Measuring Association and Testing Independence Efficiently
matlab
MATLAB emulation package
matlabr
An Interface for MATLAB using System Calls
matlib
Matrix Functions for Teaching and Learning Linear Algebra and Multivariate Statistics
matpow
matrix powers
matR
Metagenomics Analysis Tools for R
Matrix
Sparse and Dense Matrix Classes and Methods
Matrix
Sparse and Dense Matrix Classes and Methods
matrixcalc
Collection of functions for matrix calculations
MatrixCorrelation
Matrix Correlation Coefficients
MatrixEQTL
Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
matrixLaplacian
Normalized Laplacian Matrix and Laplacian Map
MatrixLDA
Penalized Matrix-Normal Linear Discriminant Analysis
MatrixModels
Modelling With Sparse and Dense Matrices
MatrixModels
Modelling with Sparse And Dense Matrices
matrixpls
Matrix-Based Partial Least Squares Estimation
MatrixRider
Obtain total affinity and occupancies for binding site matrices on a given sequence
matrixStats
Functions that Apply to Rows and Columns of Matrices (and to Vectors)
matrixStats
Methods that apply to rows and columns of a matrix
Matrix.utils
Data.frame-Like Operations on Sparse and Dense Matrix Objects
matter
A framework for rapid prototyping with binary data on disk
MATTOOLS
Modern Calibration Functions for the Modern Analog Technique (MAT)
MAVIS
Meta Analysis via Shiny
MAVTgsa
Three methods to identify differentially expressed gene sets, ordinary least square test, Multivariate Analysis Of Variance test with n contrasts and Random forest.
MaXact
Exact max-type Cochran-Armitage trend test(CATT)
maxent
Low-memory Multinomial Logistic Regression with Support for Text Classification
MaxentVariableSelection
Selecting the Best Set of Relevant Environmental Variables along with the Optimal Regularization Multiplier for Maxent Niche Modeling
maxLik
Maximum Likelihood Estimation and Related Tools
maxLik
Maximum Likelihood Estimation and Related Tools
maxlike
Model species distributions by estimating the probability of occurrence using presence-only data.
maxnet
Fitting 'Maxent' Species Distribution Models with 'glmnet'
MaxPro
Maximum Projection Designs
MaxSkew
Orthogonal Data Projections with Maximal Skewness
maxstat
Maximally Selected Rank Statistics
MazamaSpatialUtils
Mazama Science Spatial Data Download and Utility Functions
MBA
Multilevel B-spline Approximation
MBAmethyl
Model-based analysis of DNA methylation data
MBASED
Package containing functions for ASE analysis using Meta-analysis Based Allele-Specific Expression Detection
mbbefd
Maxwell Boltzmann Bose Einstein Fermi Dirac Distribution and Destruction Rate Modelling
MBC
Multivariate Bias Correction of Climate Model Outputs
MBCB
MBCB (Model-based Background Correction for Beadarray)
MBCluster.Seq
Model-Based Clustering for RNA-seq Data
mbclusterwise
Clusterwise Multiblock Analyses
MBESS
The MBESS R Package
mbest
Moment-Based Estimation for Hierarchical Models
MBHdesign
Spatial Designs for Ecological and Environmental Surveys
MBI
(M)ultiple-site (B)iodiversity (I)ndices Calculator
mblm
Median-Based Linear Models
MBmca
Nucleic Acid Melting Curve Analysis on Microbead Surfaces with R
mbmdr
Model Based Multifactor Dimensionality Reduction
mboost
Model-Based Boosting
mBPCR
Bayesian Piecewise Constant Regression for DNA copy number estimation
MBSGS
Multivariate Bayesian Sparse Group Selection with Spike and Slab
MBTAr
Access Data from the Massachusetts Bay Transit Authority (MBTA) Web API
MBttest
Multiple Beta t-Tests
mBvs
Multivariate Bayesian Variable Selection Method Exploiting Dependence among Outcomes
mc2d
Tools for Two-Dimensional Monte-Carlo Simulations
mc2d
Tools for Two-Dimensional Monte-Carlo Simulations
MC2toPath
Translates information from netcdf files with MC2 output into inter-PVT transitions.
mcaGUI
Microbial Community Analysis GUI
MCAPS
MCAPS data and results
MCAvariants
Multiple Correspondence Analysis Variants
mcbiopi
Matrix Computation Based Identification Of Prime Implicants
mcc
Moment Corrected Correlation
mcclust
Process an MCMC Sample of Clusterings
MCDA
Functions to Support the Multicriteria Decision Aiding Process
MCDM
Multi-Criteria Decision Making Methods for Crisp Data
mcemGLM
Maximum Likelihood Estimation for Generalized Linear Mixed Models
mcga
Machine Coded Genetic Algorithms for Real-Valued Optimization Problems
mcgfa
Mixtures of Contaminated Gaussian Factor Analyzers
mcgibbsit
Warnes and Raftery's MCGibbsit MCMC diagnostic
mcglm
Multivariate Covariance Generalized Linear Models
mcGlobaloptim
Global optimization using Monte Carlo and Quasi Monte Carlo simulation
mcheatmaps
Multiple matrices heatmap visualization
MChtest
Monte Carlo hypothesis tests with Sequential Stopping
MCI
Multiplicative Competitive Interaction (MCI) Model
MCIBD
Monte Carlo Identity-By-Descent Matrix Estimation
mcIRT
IRT models for multiple choice items (mcIRT)
MCL
Markov Cluster Algorithm
mclcar
Estimating Conditional Auto-Regressive (CAR) Models using Monte Carlo Likelihood Methods
mcll
Monte Carlo Local Likelihood Estimation
mclogit
Mixed Conditional Logit Models
mclogit
Mixed Conditional Logit
mclust
Gaussian Mixture Modelling for Model-Based Clustering, Classification, and Density Estimation
mcmc
Markov Chain Monte Carlo
MCMC4Extremes
Posterior Distribution of Extreme Value Models in R
MCMCglmm
MCMC Generalised Linear Mixed Models
MCMC.OTU
Bayesian Analysis of Multivariate Counts Data in DNA Metabarcoding and Ecology
MCMCpack
Markov Chain Monte Carlo (MCMC) Package
mcmcplots
Create Plots from MCMC Output
MCMC.qpcr
Bayesian Analysis of qRT-PCR Data
mcmcse
Monte Carlo Standard Errors for MCMC
MCMCvis
Tools to Visualize, Manipulate, and Summarize MCMC Output
mco
Multi criteria optimization algorithms and related functions
mco
Multiple Criteria Optimization Algorithms and Related Functions
Mcomp
Data from the M-competitions
MConjoint
Conjoint Analysis through Averaging of Multiple Analyses
mcPAFit
Estimating Preferential Attachment from a Single Network Snapshot by Markov Chain Monte Carlo
MCPAN
Multiple Comparisons Using Normal Approximation
mcparallelDo
A Simplified Interface for Running Commands on Parallel Processes
MCPerm
A Monte Carlo permutation method for multiple test correlation
mcplR
Multiple Cue Probability Learning in R
MCPMod
Design and Analysis of Dose-Finding Studies
mcp.project
Applies different False Discovery Rate controlling procedures
mcprofile
Testing Generalized Linear Hypotheses for Generalized Linear Model Parameters by Profile Deviance
mcr
Method Comparison Regression
MCRestimate
Misclassification error estimation with cross-validation
MCS
Model Confidence Set Procedure
mcsm
Functions for Monte Carlo Methods with R
McSpatial
Nonparametric spatial data analysis
mcsSubset
MCS: Variable Subset Selection in Linear Regression
mctest
Multicollinearity Diagnostic Measures
MCTM
Markov Chains Transition Matrices
md
Selecting Bandwidth for Kernel Density Estimator with Minimum Distance Method
mda
Mixture and Flexible Discriminant Analysis
mdatools
Multivariate Data Analysis for Chemometrics
mded
Measuring the Difference Between Two Empirical Distributions
mdgsa
Multi Dimensional Gene Set Analysis.
mdhglm
Multivariate Double Hierarchical Generalized Linear Models
MDimNormn
Multi-Dimensional MA Normalization for Plate Effect
MDM
Multinomial Diversity Model
MDMR
Multivariate Distance Matrix Regression
MDP
Markov Decision Processes (MDPs) in R
mdpeer
Graph-Constrained Regression with Enhanced Regularization Parameters Selection
MDplot
Visualising Molecular Dynamics Analyses
MDPtoolbox
Markov Decision Processes toolbox
mdqc
Mahalanobis Distance Quality Control for microarrays
MDR
Detect gene-gene interactions using multifactor dimensionality reduction
mdscore
Improved Score Tests for Generalized Linear Models
mdsdt
Functions for Analysis of Data with General Recognition Theory
MDSGUI
A GUI for interactive MDS in R
MDSGUI
A GUI for interactive MDS in R
mdsr
Complement to 'Modern Data Science with R'
MEAL
Perform methylation analysis
MeanShift
Clustering via the Mean Shift Algorithm
meanShiftR
A Computationally Efficient Mean Shift Implementation
MeasurementError.cor
Measurement Error model estimate for correlation coefficient
measurements
Tools for Units of Measurement
measuRing
Detection and Control of Tree-Ring Widths on Scanned Image Sections
meboot
Maximum Entropy Bootstrap for Time Series
MEclustnet
Fits the Mixture of Experts Latent Position Cluster Model to Network Data
mederrRank
Bayesian Methods for Identifying the Most Harmful Medication Errors
medfate
Mediterranean Forest Simulation
medflex
Flexible Mediation Analysis Using Natural Effect Models
MediaK
Calculate MeDiA_K Distance
Mediana
Clinical Trial Simulations
mediation
Causal Mediation Analysis
medicalrisk
Medical Risk and Comorbidity Tools for ICD-9-CM Data
medicare
Tools for Obtaining and Cleaning Medicare Public Use Files
MeDiChI
MeDiChI ChIP-chip deconvolution library
MEDIPS
DNA IP-seq data analysis
MEDME
Modelling Experimental Data from MeDIP Enrichment
MedOr
Median Ordering Statistical R package
medSTC
A max-margin supervised Sparse Topical Coding Model
MEET
MEET: Motif Elements Estimation Toolkit
MEET
MEET: Motif Elements Estimation Toolkit
mefa
Multivariate Data Handling in Ecology and Biogeography
mefa
Multivariate Data Handling in Ecology and Biogeography
mefa4
Multivariate Data Handling with S4 Classes and Sparse Matrices
mefa4
Multivariate Data Handling with S4 Classes and Sparse Matrices
megaptera
MEGAPhylogeny Techniques in R
MEGENA
Multiscale Clustering of Geometrical Network
meifly
Interactive model exploration using GGobi
MEIGOR
MEIGO - MEtaheuristics for bIoinformatics Global Optimization
MELON
Methylation Enriched LOci Normalization (MELON) for genome-wide DNA methylation experiments
melviewr
View and Classify MELODIC Output for ICA+FIX
mem
Moving Epidemic Method R Package.
memgene
Spatial pattern detection in genetic distance data
memgene
Spatial pattern detection in genetic distance data using Moran's Eigenvector Maps
memisc
Tools for Management of Survey Data and the Presentation of Analysis Results
memisc
Tools for Management of Survey Data and the Presentation of Analysis Results
memo
In-Memory Caching for Repeated Computations
memoise
Memoisation of Functions
MEMSS
Data sets from Mixed-effects Models in S
MEMSS
Data sets from Mixed-effects Models in S
memuse
Memory Estimation Utilities
MendelianRandomization
Mendelian Randomization Package
MenuCollection
Collection of Configurable GTK+ Menus
MergeGUI
A GUI for Merging Datasets in R
MergeMaid
Merge Maid
Mergeomics
Integrative network analysis of omics data
merror
Accuracy and Precision of Measurements
merTools
Tools for Analyzing Mixed Effect Regression Models
MeSHDbi
DBI to construct MeSH-related package from sqlite file
meshes
MeSH Enrichment and Semantic analyses
meshr
Tools for conducting enrichment analysis of MeSH
MeSHSim
MeSH(Medical Subject Headings) Semantic Similarity Measures
MESS
Miscellaneous Esoteric Statistical Scripts
messageQueue
Allow R to communicate with message queues
messina
Single-gene classifiers and outlier-resistant detection of differential expression for two-group and survival problems.
meta
General Package for Meta-Analysis
meta4diag
Meta-Analysis for Diagnostic Test Studies
meta4diag
Meta-Analysis for Diagnostic Test Studies
MetaAnalyser
An Interactive Visualisation of Meta-Analysis as a Physical Weighing Machine
metaArray
Integration of Microarray Data for Meta-analysis
Metab
Metab: An R Package for a High-Throughput Analysis of Metabolomics Data Generated by GC-MS.
MetABEL
Meta-analysis of genome-wide SNP association results
MetABEL
Meta-analysis of genome-wide SNP association results
MetabolAnalyze
Probabilistic latent variable models for metabolomic data.
metabolomics
Analysis of Metabolomics Data
metabomxtr
A package to run mixture models for truncated metabolomics data with normal or lognormal distributions
MetaboQC
Normalize Metabolomic Data using QC Signal
MetaboSignal
MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways
metaCCA
Summary Statistics-Based Multivariate Meta-Analysis of Genome-Wide Association Studies Using Canonical Correlation Analysis
metacoder
Tools for Parsing, Manipulating, and Graphing Hierarchical Data
metacom
Analysis of the 'Elements of Metacommunity Structure'
metacor
Meta-analysis of correlation coefficients
MetaCycle
Evaluate Periodicity in Large Scale Data
MetaDE
MetaDE: Microarray meta-analysis for differentially expressed gene detection
metafolio
Metapopulation simulations for conserving salmon through portfolio optimization
metafor
Meta-Analysis Package for R
metafuse
Fused Lasso Approach in Regression Coefficient Clustering
metagear
Comprehensive Research Synthesis Tools for Systematic Reviews and Meta-Analysis
metagen
Inference in Meta Analysis and Meta Regression
metagene
A package to produce metagene plots
metagenomeFeatures
Exploration of marker-gene sequence taxonomic annotations
metagenomeSeq
Statistical analysis for sparse high-throughput sequencing
metahdep
Hierarchical Dependence in Meta-Analysis
metaheur
Metaheuristic Optimization Framework for Preprocessing Combinations
MetaheuristicFPA
An Implementation of Flower Pollination Algorithm in R
MetaIntegrator
Meta-Analysis of Gene Expression Data
MetaLandSim
Landscape and Range Expansion Simulation
metaLik
Likelihood Inference in Meta-Analysis and Meta-Regression Models
metaMA
Meta-analysis for MicroArrays
metamisc
Diagnostic and prognostic meta analysis (metamisc)
metaMix
Bayesian Mixture Analysis for Metagenomic Community Profiling
metaMS
MS-based metabolomics annotation pipeline
metansue
Meta-Analysis of Studies with Non Statistically-Significant Unreported Effects
metap
Meta-Analysis of Significance Values
MetaPath
Perform the Meta-Analysis for Pathway Enrichment Analysis (MAPE)
MetaPCA
MetaPCA: Meta-analysis in the Dimension Reduction of Genomic data
metaplotr
Creates CrossHairs Plots for Meta-Analyses
metaplus
Robust Meta-Analysis and Meta-Regression
metapop
Metapopulations and Incidence Functions
MetaQC
MetaQC: Objective Quality Control and Inclusion/Exclusion Criteria for Genomic Meta-Analysis
metaRNASeq
Meta-analysis of RNA-seq data
metaRNASeq
Meta-analysis of RNA-seq data
metaSEM
Meta-Analysis using Structural Equation Modeling
metasens
Advanced Statistical Methods to Model and Adjust for Bias in Meta-Analysis
metaSeq
Meta-analysis of RNA-Seq count data in multiple studies
metaseqR
An R package for the analysis and result reporting of RNA-Seq data by combining multiple statistical algorithms.
MetaSKAT
Meta Analysis for SNP-Set (Sequence) Kernel Association Test
metatest
Fit and test metaregression models
metatest
Fit and test metaregression models
Metatron
Meta-analysis for Classification Data and Correction to Imperfect Reference
metaX
An R package for metabolomic data analysis
MetCirc
MetCirc - a workflow to analyse and visualise metabolomics data
meteo
Spatio-Temporal Analysis and Mapping of Meteorological Observations
meteo
Spatio-Temporal Analysis and Mapping of Meteorological Observations
meteoForecast
Numerical Weather Predictions
meteogRam
Tools for plotting meteograms
meteoland
Landscape Meteorology Tools
meteR
Fitting and Plotting Tools for the Maximum Entropy Theory of Ecology (METE)
MetFns
Analysis of Visual Meteor Data
Meth27QC
Meth27QC: sample quality analysis, and sample control analysis
MethComp
Analysis of Method Comparison studies
MethComp
Functions for Analysis of Agreement in Method Comparison Studies
MethodCompare
Bias and Precision Plots to Compare Two Measurements with Possibly Heteroscedastic Measurement Errors
MethPed
A DNA methylation classifier tool for the identification of pediatric brain tumor subtypes
Methplot
Visualize the methylation patterns
MethTargetedNGS
Perform Methylation Analysis on Next Generation Sequencing Data
methVisual
Methods for visualization and statistics on DNA methylation data
methyAnalysis
DNA methylation data analysis and visualization
MethyBayes
Full Bayesian Partition Model for Identifying Differentially Methylated Loci
MethylAid
Visual and interactive quality control of large Illumina DNA Methylation array data sets
MethylCapSig
Detection of Differentially Methylated Regions using MethylCap-Seq Data
methylKit
DNA methylation analysis from high-throughput bisulfite sequencing results
MethylMix
MethylMix: Identifying methylation driven cancer genes.
methylMnM
detect different methylation level (DMR)
methylPipe
Base resolution DNA methylation data analysis
MethylSeekR
Segmentation of Bis-seq data
methylumi
Handle Illumina methylation data
metlab
The Metrics Laboratory
MetNorm
Statistical Methods for Normalizing Metabolomics Data
MetProc
Separate Metabolites into Likely Measurement Artifacts and True Metabolites
Metrics
Evaluation metrics for machine learning
metricsgraphics
Create Interactive Charts with the JavaScript 'MetricsGraphics' Library
metricTester
Test Metric and Null Model Statistical Performance
metRology
Support for Metrological Applications
metRology
Support for Metrological Applications
metrumrg
Pharmacometric Tools for Data Preparation, Modeling, Simulation, and Reporting
mets
Analysis of Multivariate Event Times
mets
Analysis of Multivariate Event Times
MetSizeR
GUI Tool for Estimating Sample Sizes for Metabolomic Experiments
MetStaT
Statistical metabolomics tools
mev
Multivariate Extreme Value Distributions
mewAvg
A Fixed Memeory Moving Expanding Window Average
mexhaz
Mixed Effect Excess Hazard Models
MExPosition
Multi-table ExPosition
MF
Mitigated Fraction
MFAg
Multiple Factor Analysis (MFA)
MFHD
Multivariate Functional Halfspace Depth
mFilter
Miscellaneous time series filters
mfp
Multivariable Fractional Polynomials
MFPCA
Multivariate Functional Principal Component Analysis for Data Observed on Different Dimensional Domains
MFTSR
Modelling Financial Time Series with R
MfUSampler
Multivariate-from-Univariate (MfU) MCMC Sampler
Mfuzz
Soft clustering of time series gene expression data
mfx
Marginal Effects, Odds Ratios and Incidence Rate Ratios for GLMs
mgarchBEKK
Simulating, Estimating and Diagnosing MGARCH (BEKK and mGJR) Processes
mgcv
Mixed GAM Computation Vehicle with GCV/AIC/REML Smoothness Estimation
MGFM
Marker Gene Finder in Microarray gene expression data
MGFR
Marker Gene Finder in RNA-seq data
MGGM
Structural Pursuit Over Multiple Undirected Graphs
MGL
Module Graphical Lasso
MGLM
Multivariate Response Generalized Linear Models
mglmn
Model Averaging for Multivariate GLM with Null Models
mgm
Estimating Time-Varying Mixed Graphical Models
mgpd
mgpd: Functions for multivariate generalized Pareto distribution (MGPD of Type II)
mgraph
Graphing map attributes and non-map variables in R
MGRASTer
API Client for the MG-RAST Server of the US DOE KBase
mgsa
Model-based gene set analysis
MGSDA
Multi-Group Sparse Discriminant Analysis
mGSZ
Gene set analysis based on GSZ-scoring function and asymptotic p-value
mGSZ
Gene set analysis based on GSZ-scoring function and asymptotic p-value
MHadaptive
General Markov Chain Monte Carlo for Bayesian Inference using adaptive Metropolis-Hastings sampling
mhde
Minimum Hellinger Distance Test for Normality
mHG
Minimum-Hypergeometric Test
mhsmm
Inference for Hidden Markov and Semi-Markov Models
mht
Multiple Hypothesis Testing for Variable Selection in High-Dimensional Linear Models
mhtboot
Multiple Hypothesis Test Based on Distribution of p Values
MHTdiscrete
Multiple Hypotheses Testing for Discrete Data
MHTrajectoryR
Bayesian Model Selection in Logistic Regression for the Detection of Adverse Drug Reactions
MHTrajectoryR
Bayesian Model Selection in Logistic Regression for the Detection of Adverse Drug Reactions
mhurdle
Multiple Hurdle Tobit Models
mhurdle
Multiple Hurdle Tobit Models
mi
Missing Data Imputation and Model Checking
mi
Missing Data Imputation and Model Checking
MIAmaxent
Maxent Distribution Model Selection
mice
Multivariate Imputation by Chained Equations
miceadds
Some Additional Multiple Imputation Functions, Especially for 'mice'
micEcon
Microeconomic Analysis and Modelling
micEcon
Microeconomic Analysis and Modelling
micEconAids
Demand Analysis with the Almost Ideal Demand System (AIDS)
micEconAids
Demand Analysis with the Almost Ideal Demand System (AIDS)
micEconCES
Analysis with the Constant Elasticity of Substitution (CES) function
micEconCES
Analysis with the Constant Elasticity of Substitution (CES) function
micEconDist
Microeconomic Production Analysis with Distance Functions
micEconNP
Microeconomic Analysis with Non-Parametric Methods
micEconSNQP
Symmetric Normalized Quadratic Profit Function
micEconSNQP
Symmetric Normalized Quadratic Profit Function
MiChip
MiChip Parsing and Summarizing Functions
micompr
Multivariate Independent Comparison of Observations
miCoPTCM
Promotion Time Cure Model with Mis-Measured Covariates
microbats
An Implementation of Bat Algorithm in R
microbenchmark
Accurate Timing Functions
microclass
Methods for Taxonomic Classification of Prokaryotes
microcontax
The ConTax Data Package
MicroDatosEs
Utilities for Official Spanish Microdata
micromap
Linked Micromap Plots
micromapST
Linked Micromap Plots for General U. S. Geographic Areas
micropan
Microbial Pan-Genome Analysis
microplot
Use R Graphics Files as Microplots (Sparklines) in Tables in LaTeX or HTML Files, and Output Data.frames to Org-Mode
microRNA
Data and functions for dealing with microRNAs
microseq
Basic Biological Sequence Analysis
MicroStrategyR
MicroStrategyR Package
MicSim
Performing Continuous-Time Microsimulation
midasr
Mixed Data Sampling Regression
midastouch
Multiple Imputation by Distance Aided Donor Selection
MIDN
Nearly Exact Sample Size Calculation for Exact Powerful Nonrandomized Tests for Differences Between Binomial Proportions
midrangeMCP
Multiple Comparisons Procedures Based on Studentized Midrange and Range Distributions
mif2
MIF2 algorithm development package
MigClim
Implementing dispersal into species distribution models
migest
Methods for the Indirect Estimation of Bilateral Migration
migration.indices
Migration indices
migui
Graphical User Interface of the mi Package
migui
Graphical User Interface to the 'mi' Package
MIICD
Multiple Imputation for Interval Censored Data
MIIVsem
Model Implied Instrumental Variable (MIIV) Estimation of Structural Equation Models
MILC
MIcrosimulation Lung Cancer (MILC) model
milonga
Multiple Imputation for Multivariate Binary Outcome
milr
Multiple-Instance Logistic Regression with LASSO Penalty
mime
Map Filenames to MIME Types
MImix
Mixture summary method for multiple imputation
MIMOSA
Mixture Models for Single-Cell Assays
MindOnStats
Data sets included in Utts and Heckard's Mind on Statistics
MineICA
Analysis of an ICA decomposition obtained on genomics data
minerva
Maximal Information-Based Nonparametric Exploration R Package for Variable Analysis
minet
Mutual Information NETworks
Miney
Implementation of the Well-Known Game to Clear Bombs from a Given Field (Matrix)
minfi
Analyze Illumina Infinium DNA methylation arrays
miniCRAN
Create a Mini Version of CRAN Containing Only Selected Packages
miniGUI
tktcl quick and simple function GUI.
minimap
Create Tile Grid Maps
minimax
Minimax distribution family
minimaxdesign
Minimax and Minimax Projection Designs
minimist
Parse Argument Options
MinimumDistance
A Package for De Novo CNV Detection in Case-Parent Trios
miniUI
Shiny UI Widgets for Small Screens
minpack.lm
R Interface to the Levenberg-Marquardt Nonlinear Least-Squares Algorithm Found in MINPACK, Plus Support for Bounds
minPtest
Gene region-level testing procedure for SNP data, using the min P test resampling approach
minqa
Derivative-free optimization algorithms by quadratic approximation
minqa
Derivative-free optimization algorithms by quadratic approximation
minque
An R Package for Linear Mixed Model Analyses
MInt
Learn Direct Interaction Networks
minval
MINimal VALidation for Stoichiometric Reactions
minxent
Entropy Optimization Distributions
mipfp
Multidimensional Iterative Proportional Fitting and Alternative Models
MIPHENO
Mutant Identification through Probabilistic High throughput Enabled NOrmalization
MiPP
Misclassification Penalized Posterior Classification
miRada
MicroRNA Microarray Data Analysis
MiRaGE
MiRNA Ranking by Gene Expression
MiRAnorm
Adaptive Normalization for miRNA Data
miRcomp
Tools to assess and compare miRNA expression estimatation methods
mirIntegrator
Integrating microRNA expression into signaling pathways for pathway analysis
miRLAB
Dry lab for exploring miRNA-mRNA relationships
miRNAmeConverter
Convert miRNA Names to Different miRBase Versions
miRNApath
miRNApath: Pathway Enrichment for miRNA Expression Data
miRNAtap
miRNAtap: microRNA Targets - Aggregated Predictions
MiRSEA
'MicroRNA' Set Enrichment Analysis
Mirsynergy
Mirsynergy
mirt
Multidimensional Item Response Theory
mirtCAT
Computerized Adaptive Testing with Multidimensional Item Response Theory
miRtest
Combined miRNA- and mRNA-Testing
miRtest
combined miRNA- and mRNA-testing
misc3d
Miscellaneous 3D Plots
miscF
Miscellaneous Functions
miscFuncs
Miscellaneous Useful Functions Including LaTeX Tables, Kalman Filtering and Development Tools
misclassGLM
Computation of Generalized Linear Models with Misclassified Covariates Using Side Information
miscor
Miscellaneous Functions for the Correlation Coefficient
miscset
Miscellaneous Tools Set
miscTools
Miscellaneous Tools and Utilities
miscTools
Miscellaneous Tools and Utilities
mise
Clears the Workspace (Mise en Place)
MiSPU
Microbiome Based Sum of Powered Score (MiSPU) Tests
misreport
Statistical Analysis of Misreporting on Sensitive Survey Questions
missDeaths
'Correctly Analyse Disease Recurrence with Missing at Risk Information using Population Mortality'
missForest
Nonparametric Missing Value Imputation using Random Forest
MissingDataGUI
A GUI for Missing Data Exploration
missMDA
Handling missing values with/in multivariate data analysis (principal component methods)
missMDA
Handling Missing Values with Multivariate Data Analysis
MissMech
Testing Homoscedasticity, Multivariate Normality, and Missing Completely at Random
missMethyl
Analysing Illumina HumanMethylation BeadChip Data
MiST
Mixed effects Score Test for continuous outcomes
mistat
Data Sets, Functions and Examples from the Book: "Modern Industrial Statistics" by Kenett, Zacks and Amberti
mistral
Methods in Structural Reliability Analysis
MitISEM
Mixture of Student t Distributions using Importance Sampling and Expectation Maximization
mitml
Tools for Multiple Imputation in Multilevel Modeling
mitoODE
Implementation of the differential equation model described in "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"
mitools
Tools for multiple imputation of missing data
mitools
Tools for multiple imputation of missing data
mix
Estimation/Multiple Imputation for Mixed Categorical and Continuous Data
mixAK
Multivariate Normal Mixture Models and Mixtures of Generalized Linear Mixed Models Including Model Based Clustering
MixAll
Clustering using Mixture Models
MixAll
Clustering using Mixture Models
mixcat
Mixed effects cumulative link and logistic regression models
MixCluster
MixCluster performs the clustering of mixed-type data sets (data sets with different natures of variables) with missing values.
mixdist
Finite Mixture Distribution Models
MixedDataImpute
Missing Data Imputation for Continuous and Categorical Data using Nonparametric Bayesian Joint Models
mixedMem
Tools for Discrete Multivariate Mixed Membership Models
MixedPoisson
Mixed Poisson Models
mixedsde
Estimation Methods for Stochastic Differential Mixed Effects Models
MixedTS
Mixed Tempered Stable Distribution
MixedTS
Mixed Tempered Stable Distribution
mixer
Random graph clustering
mixexp
Design and Analysis of Mixture Experiments
mixexp
Design and Analysis of Mixture Experiments
MIXFIM
Evaluation of the FIM in NLMEMs using MCMC
MixGHD
Model Based Clustering, Classification and Discriminant Analysis Using the Mixture of Generalized Hyperbolic Distributions
MixGHD
Model Based Clustering, Classification and Discriminant Analysis Using the Mixture of Generalized Hyperbolic Distributions
mixlm
Mixed Model ANOVA and Statistics for Education
mixlm
Mixed model ANOVA for lm and lmer
MixMAP
Implements the MixMAP Algorithm
mixOmics
Omics Data Integration Project
mixor
Mixed-Effects Ordinal Regression Analysis
mixpack
Tools to Work with Mixture Components
mixPHM
Mixtures of Proportional Hazard Models
mixPHM
Mixtures of proportional hazard models.
mixRasch
Mixture Rasch Models with JMLE
mixreg
Functions to fit mixtures of regressions.
MixRF
A Random-Forest-Based Approach for Imputing Clustered Incomplete Data
mixsep
Forensic Genetics DNA Mixture Separation
MixSIAR
Bayesian Mixing Models in R
MixSim
Simulating Data to Study Performance of Clustering Algorithms
mixsmsn
Fitting Finite Mixture of Scale Mixture of Skew-Normal Distributions
mixstock
functions for mixed stock analysis
mixtNB
DE Analysis of RNA-Seq Data by Mixtures of NB
mixtools
Tools for Analyzing Finite Mixture Models
mixtox
Curve Fitting and Mixture Toxicity Assessment
mixture
Mixture Models for Clustering and Classification
MixtureDistribution
Mixture Distribution
MixtureInf
Inference for Finite Mixture Models
mixvarselect
Mixture of expert modelling with variable selection using penalization
mizer
Multi-species sIZE spectrum modelling in R
mkde
2D and 3D movement-based kernel density estimates (MKDEs).
mkin
Kinetic Evaluation of Chemical Degradation Data
mkin
Kinetic Evaluation of Chemical Degradation Data
MKLE
Maximum kernel likelihood estimation.
MKmisc
Miscellaneous Functions from M. Kohl
mkssd
Efficient multi-level k-circulant supersaturated designs
mlbench
Machine Learning Benchmark Problems
MLCIRTwithin
Latent Class Item Response Theory (LC-IRT) Models under Within-Item Multidimensionality
MLCM
Maximum Likelihood Conjoint Measurement
mlDNA
Machine Learning-based Differential Network Analysis of Transcriptome Data
mldr
Exploratory Data Analysis and Manipulation of Multi-Label Data Sets
mldr.datasets
R Ultimate Multilabel Dataset Repository
MLDS
Maximum Likelihood Difference Scaling
mlearning
Machine learning algorithms with unified interface and confusion matrices
mlearning
Machine learning algorithms with unified interface and confusion matrices
MLEcens
Computation of the MLE for bivariate (interval) censored data
mlegp
Maximum Likelihood Estimates of Gaussian Processes
mleur
Maximum likelihood unit root test
mlfm
Semiparametric multilevel frailty models, estimated via EMPL method
MLGL
Multi-Layer Goup-Lasso
mlgt
Multi-Locus Geno-Typing
mlica2
Independent Component Analysis using Maximum Likelihood
MLInterfaces
Uniform interfaces to R machine learning procedures for data in Bioconductor containers
mlma
Multilevel Mediation Analysis
mlmc
Multi-Level Monte Carlo
MLmetrics
Machine Learning Evaluation Metrics
mlmmm
ML estimation under multivariate linear mixed models with missing values
mlmRev
Examples from Multilevel Modelling Software Review
mlmRev
Examples from Multilevel Modelling Software Review
mlogit
multinomial logit model
mlogit
multinomial logit model
mlogitBMA
Bayesian Model Averaging for Multinomial Logit Models
MLP
MLP
mlPhaser
Multi-Locus Haplotype Phasing
MLPUGS
Multi-Label Prediction Using Gibbs Sampling (and Classifier Chains)
mlr
Machine Learning in R
MLRMPA
A package for Multilinear Regression Model Population Analysis
MLSeq
Machine learning interface for RNA-Seq data
mlsjunkgen
Use the MLS Junk Generator Algorithm to Generate a Stream of Pseudo-Random Numbers
mlt
Most Likely Transformations
mlt
Most Likely Transformations
mlt.docreg
Most Likely Transformations: Documentation and Regression Tests
mltools
Machine Learning Tools
mlVAR
Multi-Level Vector Autoregression
mlxR
Simulation of Longitudinal Data
MM
The multiplicative multinomial distribution
MM2S
Single-Sample Classifier of Medulloblastoma Subtypes for Medulloblastoma Patient Samples, Mouse Models, and Cell Lines
MM2Sdata
Gene Expression Datasets for the 'MM2S' Package
mma
Multiple Mediation Analysis
mmand
Mathematical Morphology in Any Number of Dimensions
mmap
Map Pages of Memory
mmap
Map Pages of Memory
mmc
Multivariate Measurement Error Correction
mmcm
Modified Maximum Contrast Method
MMDai
Multivariate Multinomial Distribution Approximation and Imputation for Incomplete Data
MMDiff
Statistical Testing for ChIP-Seq data sets
MMDiff2
Statistical Testing for ChIP-Seq data sets
mmds
Mixture Model Distance Sampling (mmds)
mme
Multinomial Mixed Effects Models
mmeln
Estimation of Multinormal Mixture Distribution
mmeta
Multivariate Meta-Analysis
MmgraphR
Graphing for Markov Models and Hidden Markov Models
mmm
an R package for analyzing multivariate longitudinal data with multivariate marginal models
mmm2
Multivariate marginal models with shared regression parameters
MMMS
Multi-Marker Molecular Signature for Treatment-specific Subgroup Identification
mmnet
A metagenomic pipeline for systems biology
mmod
Modern Measures of Population Differentiation
MmPalateMiRNA
Murine Palate miRNA Expression Analysis
mmpf
Monte-Carlo Methods for Prediction Functions
mmpp
Various Similarity and Distance Metrics for Marked Point Processes
mmppr
Markov Modulated Poisson Process for Unsupervised Event Detection in Time Series of Counts
MMS
Fixed effects Selection in Linear Mixed Models
mmSAR
mmSAR is an R package for the modelling of the Species-Area Relationship (SAR).
mmtfa
Model-Based Clustering and Classification with Mixtures of Modified t Factor Analyzers
MMWRweek
Convert Dates to MMWR Day, Week, and Year
mnbem
Matrix Normal Block EM
mnlogit
Multinomial Logit Model
MNM
Multivariate Nonparametric Methods. An Approach Based on Spatial Signs and Ranks
mnormpow
Multivariate Normal Distributions with Power Integrand
mnormt
The Multivariate Normal and t Distributions
MNP
R Package for Fitting the Multinomial Probit Model
MNS
Mixed Neighbourhood Selection
Mobilize
Mobilize plots and functions
MOCCA
Multi-objective optimization for collecting cluster alternatives
mockery
Mocking Library for R
mod09nrt
Extraction of Bands from MODIS Surface Reflectance Product MOD09 NRT
MODA
MODA: MOdule Differential Analysis for weighted gene co-expression network
Modalclust
Hierarchical Modal Clustering
modeest
Mode Estimation
modehunt
Multiscale Analysis for Density Functions
ModelDataComp
Model-Data Comparison
Modeler
Classes and Methods for Training and Using Binary Prediction Models
modelfree
Model-free estimation of a psychometric function
modelfree
Model-free estimation of a psychometric function
ModelGood
Validation of risk prediction models
ModelGood
Validation of risk prediction models
ModelMap
Modeling and Map Production using Random Forest and Stochastic Gradient Boosting
ModelMetrics
Rapid Calculation of Model Metrics
modelObj
A Model Object Framework for Regression Analysis
modelObj
A Model Object Framework for Regression Analysis
modelr
Modelling Functions that Work with the Pipe
modeltools
Tools and Classes for Statistical Models
modes
Find the Modes and Assess the Modality of Complex and Mixture Distributions, Especially with Big Datasets
modEvA
Model Evaluation and Analysis
modEvA
Model Evaluation and Analysis
modi
Multivariate outlier detection and imputation for incomplete survey data
MODIS
MODIS Acquisition and Processing
modiscloud
R tools for processing Level 2 Cloud Mask products from MODIS
modiscloud
R tools for processing Level 2 Cloud Mask products from MODIS
MODISTools
MODIS Subsetting Tools
modisws
Interface to the web processing service for MODIS data
modMax
Community Structure Detection via Modularity Maximization
modQR
Multiple-Output Directional Quantile Regression
modTempEff
Modelling temperature effects using time series data
moduleColor
Basic Module Functions
modules
Self Contained Units of Source Code
modygliani
MOlecular DYnamics GLobal ANalysis
mogavs
Multiobjective Genetic Algorithm for Variable Selection in Regression
mogsa
Multiple omics data integrative clustering and gene set analysis
MOJOV
Mojo Variants: Rare Variants analysis
mokken
Perform Mokken Scale Analysis in R
moko
Multi-Objective Kriging Optimization
molaR
Dental Surface Complexity Measurement Tools
mombf
Moment and Inverse Moment Bayes Factors
mombf
Moment and Inverse Moment Bayes Factors
momentchi2
Moment-Matching Methods for Weighted Sums of Chi-Squared Random Variables
moments
Moments, cumulants, skewness, kurtosis and related tests
Momocs
Morphometrics using R
momr
Mining Metaomics Data (MetaOMineR)
mondate
Keep track of dates in terms of months
Mondrian
A Simple Graphical Representation of the Relative Occurrence and Co-Occurrence of Events
MonetDBLite
In-Process Version of MonetDB for R
MonetDB.R
Connect MonetDB to R
MonetDB.R
Connect MonetDB to R
mongolite
Fast and Simple MongoDB Client for R
monitoR
Acoustic Template Detection in R
monkeylearn
Accesses the Monkeylearn API for Text Classifiers and Extractors
monmlp
Monotone Multi-Layer Perceptron Neural Network
monocle
Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq
monogeneaGM
Geometric Morphometric Analysis of Monogenean Anchors
monographaR
Taxonomic Monographs Tools
MonoInc
Monotonic Increasing
monomvn
Estimation for Multivariate Normal and Student-t Data with Monotone Missingness
MonoPhy
Allows to Explore Monophyly (or Lack of it) of Taxonomic Groups in a Phylogeny
MonoPoly
Functions to Fit Monotone Polynomials
monreg
Nonparametric Monotone Regression
moonBook
Functions and Datasets for the Book by Keon-Woong Moon
MoonlightR
Identify oncogenes and tumor suppressor genes from omics data
moonsun
Basic astronomical calculations with R
MoPS
MoPS - Model-based Periodicity Screening
mopsocd
MOPSOCD: Multi-objective Particle Swarm Optimization with Crowding Distance
MOrder
Check Time Homogeneity and Markov Chain Order
morgenstemning
Color schemes compatible with red-green color perception difficulties
Morpho
Calculations and Visualisations Related to Geometric Morphometrics
morse
MOdelling Tools for Reproduction and Survival Data in Ecotoxicology
MorseGen
Simple raw data generator based on user-specified summary statistics.
MortalitySmooth
Smoothing and Forecasting Poisson Counts with P-Splines
MortHump
Measure the Young Adult Mortality Hump
mosaic
Project MOSAIC Statistics and Mathematics Teaching Utilities
mosaicData
Project MOSAIC Data Sets
mosaicManip
Project MOSAIC (mosaic-web.org) manipulate examples.
mosaicQA
MOSAIC - Basic Quality Data Assurance for Epidemiologic Research
mosaics
MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)
MoTBFs
Learning Hybrid Bayesian Networks using Mixtures of Truncated Basis Functions
motifbreakR
A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites
MotifDb
An Annotated Collection of Protein-DNA Binding Sequence Motifs
motifRG
A package for discriminative motif discovery, designed for high throughput sequencing dataset
motifStack
Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
MotilityLab
Quantitative Analysis of Motion
MotilityLab
Quantitative Analysis of Motion
MotIV
Motif Identification and Validation
motmot
Models of Trait Macroevolution on Trees
moult
Models for Analysing Moult in Birds
mountainplot
Mountain Plots, Folded Empirical Cumulative Distribution Plots
mousetrack
Mouse-Tracking Measures from Trajectory Data
mousetrap
Process and Analyze Mouse-Tracking Data
move
Visualizing and Analyzing Animal Track Data
move
Visualizing and Analyzing Animal Track Data
moveHMM
Animal Movement Modelling using Hidden Markov Models
moveWindSpeed
Estimate Wind Speeds from Bird Trajectories
movMF
Mixtures of von Mises-Fisher Distributions
mp
Multidimensional Projection Techniques
mpa
CoWords Method
MPAgenomics
Multi-Patient Analysis of Genomic Markers
MPAgenomics
Multi-Patient Analysis of Genomic Markers
MPAlars
lars algorithm
mpath
Regularized Linear Models
mpbart
Multinomial Probit Bayesian Additive Regression Trees
mpc
MPC - Multiple Precision Complex Library
mpcbs
Multi-sample and Multiplatform CNV.
MPCI
Multivariate Process Capability Indices (MPCI)
mpcv
Multivariate Process Capability Vector
MPDiR
Data sets and scripts for Modeling Psychophysical Data in R.
MPDiR
Data sets and scripts for Modeling Psychophysical Data in R.
MPFE
Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data
mph
Multiscale persistent homology
mpia
Meaningful Purposive Interaction Analysis
mpifarm
Farm out a sequence of jobs to a cluster of slaves using MPI.
MPINet
The package can implement the network-based metabolite pathway identification of pathways.
MPLikelihoodWB
Modified Profile Likelihood Estimation for Weibull Shape and Regression Parameters
mplot
Graphical Model Stability and Variable Selection Procedures
MplusAutomation
Automating Mplus Model Estimation and Interpretation
MplusAutomation
Automating Mplus Model Estimation and Interpretation
mpm
Multivariate Projection Methods
mpm
Multivariate Projection Methods
mpMap
Multi-parent RIL genetic analysis
mpmcorrelogram
Multivariate Partial Mantel Correlogram
mpmi
Mixed-Pair Mutual Information Estimators
mpmi
Mixed-pair mutual information estimators
mpmm
Marginal Product Mixture Model for Relational Event Data
mpoly
Symbolic Computation and More with Multivariate Polynomials
Mposterior
Mposterior: R package for Robust and Scalable Bayes via a Median of Subset Posterior Measures
mppa
Statistics for analysing multiple simultaneous point processes on the real line
mpr
Multi-Parameter Regression (MPR)
MPSEM
Modeling Phylogenetic Signals using Eigenvector Maps
MPsychoR
Modern Psychometrics With R
mpt
Multinomial Processing Tree Models
MPTinR
Analyze Multinomial Processing Tree Models
MPTinR
Analyze Multinomial Processing Tree Models
MPTinR2
Analyze Multinomial Processing Tree Models
mptools
RAMAS Metapop Tools
MPV
Data Sets from Montgomery, Peck and Vining's Book
mqext
M-quantile extension of the mixed linear model
mqqc
Quality control of LCMS derived proteomic data
mQTL
Metabolomic Quantitative Trait Locus Mapping
mQTL.NMR
Metabolomic Quantitative Trait Locus Mapping for 1H NMR data
mra
Analysis of Mark-Recapture Data
mratios
Inferences for ratios of coefficients in the general linear model
MRCE
Multivariate regression with covariance estimation
MRCV
Methods for Analyzing Multiple Response Categorical Variables (MRCVs)
mrds
Mark-Recapture Distance Sampling
mreg
Fits regression models when the outcome is partially missing.
mregions
Marine Regions Data from 'Marineregions.org'
MRH
Multi-Resolution Estimation of the Hazard Rate
mri
Modified Rand Index (1 and 2.1 and 2.2) and Modified Adjusted Rand Index (1 and 2.1 and 2.2)
mritc
MRI Tissue Classification
mRm
An R package for conditional maximum likelihood estimation in mixed Rasch models.
mrMLM
Multilocus Random Mixed Linear Model for Genome-Wide Association Study and Linkage Analysis
MRMR
Multivariate Regression Models for Reserving
mRMRe
R package for parallelized mRMR ensemble feature selection
mrpdata
Data for Multilevel Regression and Poststratification
MRPP
Multiresponse permutation procedure and its variable importance and variable selection methods.
MrPzurich2013
MrP functions for MA class Zurich 2013
MRQoL
Minimal Clinically Important Difference and Response Shift Effect for Health-Related Quality of Life
MRS
Multi-Resolution Scanning for Cross-Sample Differences
MRSP
Multinomial Response Models with Structured Penalties
MRsurv
A multiplicative-regression model for relative survival.
MRwarping
Multiresolution time warping for functional data.
msa
Multiple Sequence Alignment
msaenet
Multi-Step Adaptive Elastic-Net
msaFACE
Moving Subset Analysis FACE
msap
Statistical analysis for Methylation-sensitive Amplification Polymorphism data
msap
Statistical analysis for Methylation-sensitive Amplification Polymorphism data
msaR
Multiple Sequence Alignment for R Shiny
msarc
Draw Diagrams (mis)Representing the Results of Mass Spec Experiments
msBP
Multiscale Bernstein Polynomials for Densities
MSBVAR
Markov-Switching, Bayesian, Vector Autoregression Models
MSCMT
Multivariate Synthetic Control Method Using Time Series
MScombine
Combine Data from Positive and Negative Ionization Mode Finding Common Entities
mscstexta4r
R Client for the Microsoft Cognitive Services Text Analytics REST API
mscsweblm4r
R Client for the Microsoft Cognitive Services Web Language Model REST API
msda
Multi-Class Sparse Discriminant Analysis
MSDI
Multivariate Standardized Drought Index (MSDI)
mseapca
Metabolite set enrichment analysis for factor loading in principal component analysis
MSeasy
Preprocessing of Gas Chromatography-Mass Spectrometry (GC-MS) data
MSeasyTkGUI
MSeasy Tcl/Tk Graphical User Interface
MSG
Data and Functions for the Book Modern Statistical Graphics
MSGARCH
Markov-Switching GARCH Models
MSGFgui
A shiny GUI for MSGFplus
MSGFplus
An interface between R and MS-GF+
msgl
High Dimensional Multiclass Classification Using Sparse Group Lasso
MSGLasso
Multivariate Sparse Group Lasso for the Multivariate Multiple Linear Regression with an Arbitrary Group Structure
msgpackR
A library to serialize or unserialize data in MessagePack format
msgps
Degrees of freedom of elastic net, adaptive lasso and generalized elastic net
msim
This package implements the method of simulated moments for the GLMM logit mixed model as described in Jiang's (1998) article, Consistent Estimators in Generalized Linear Mixed Models.
msimul
Utilities for Simulation in Monte Carlo Experiments
msir
Model-Based Sliced Inverse Regression
MSIseq
Assess Tumor Microsatellite Instability with a Decision Tree Classifier from Exome Somatic Mutations
mskf
Markov Switching Kalman Filter
msltrend
Improved Techniques to Estimate Trend, Velocity and Acceleration from Sea Level Records
msm
Multi-State Markov and Hidden Markov Models in Continuous Time
msm
Multi-State Markov and Hidden Markov Models in Continuous Time
msma
Multiblock Sparse Multivariable Analysis
msme
Functions and Datasets for "Methods of Statistical Model Estimation".
msmsEDA
Exploratory Data Analysis of LC-MS/MS data by spectral counts
msmsTests
LC-MS/MS Differential Expression Tests
msmtools
Building Augmented Data to Run Multi-State Models with 'msm' Package
MSnbase
Base Functions and Classes for MS-based Proteomics
MSnID
Utilities for Exploration and Assessment of Confidence of LC-MSn Proteomics Identifications
msos
Datasets and Functions used in Multivariate Statistics: Old School by John Marden
msPurity
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
MSQC
Multivariate Statistical Quality Control
msr
Morse-Smale Approximation, Regression and Visualization
ms.sev
Package for Calculation of ARMSS, Local MSSS and Global MSSS
MSstats
Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments
msSurv
Nonparametric Estimation for Multistate Models
MST
Multivariate Survival Trees
mstate
Data Preparation, Estimation and Prediction in Multi-State Models
MSToolkit
The MSToolkit library for clinical trial design
MSwM
Fitting Markov Switching Models
mtconnectR
Read Data from Delimited 'MTConnect' Data Files and Perform some Analysis
mtcreator
Creating MAGE-TAB files using mtcreator
mtk
Mexico ToolKit library (MTK)
MTS
All-Purpose Toolkit for Analyzing Multivariate Time Series (MTS) and Estimating Multivariate Volatility Models
mtsdi
Multivariate time series data imputation
MTurkR
R Client for the MTurk Requester API
MTurkRGUI
A Graphical User Interface for MTurkR
MUCflights
Munich Franz-Josef-Strauss Airport Pattern Analysis
muckrock
Data on Freedom of Information Act Requests
MuFiCokriging
Multi-Fidelity Cokriging models
muhaz
Hazard Function Estimation in Survival Analysis
muir
Exploring Data with Tree Data Structures
Mulcom
Calculates Mulcom test
MullerPlot
Generates Muller Plot from Population/Abundance/Frequency Dynamics Data
MultAlloc
Optimal Allocation in Stratified Sampling
multcomp
Simultaneous Inference in General Parametric Models
multcomp
Simultaneous Inference in General Parametric Models
multcompView
Visualizations of Paired Comparisons
MultEq
Multiple Equivalence Tests and Simultaneous Confidence Intervals
multgee
GEE Solver for Correlated Nominal or Ordinal Multinomial Responses
MultiABEL
Multi-Trait Genome-Wide Association Analyses
MultiAssayExperiment
Create Classes and Functions for Managing Multiple Assays on Sets of Samples
multiAssetOptions
Finite Difference Method for Multi-Asset Option Valuation
multiband
Period Estimation for Multiple Bands
MultiBD
Multivariate Birth-Death Processes
multibiplotGUI
Multibiplot Analysis in R
multic
Quantitative Linkage Analysis Tools using the Variance Components Approach
multiCA
Multinomial Cochran-Armitage Trend Test
multiCA
Multinomial Cochran-Armitage Trend Test
multiClust
multiClust: An R-package for Identifying Biologically Relevant Clusters in Cancer Transcriptome Profiles
MultiCNVDetect
Multiple Copy Number Variation Detection
multicon
Multivariate Constructs
multicool
Permutations of Multisets in Cool-Lex Order
MultiDataSet
Implementation of the BRGE's (Bioinformatic Research Group in Epidemiology from Center for Research in Environmental Epidemiology) MultiDataSet and MethylationSet
multiDimBio
Multivariate Analysis and Visualization for Biological Data
multifwf
Read Fixed Width Format Files Containing Lines of Different Type
MultiGHQuad
Multidimensional Gauss-Hermite Quadrature
multigraph
Plot and Manipulate Multigraphs
multigroup
Multigroup Data Analysis
MultiLCIRT
Multidimensional Latent Class Item Response Theory Models
multilevel
Multilevel Functions
multilevelPSA
Multilevel Propensity Score Analysis
multimark
Capture-Mark-Recapture Analysis using Multiple Non-Invasive Marks
MultiMed
Testing multiple biological mediators simultaneously
MultiMeta
Meta-analysis of Multivariate Genome Wide Association Studies
multinbmod
Regression analysis of overdispersed correlated count data
MultinomialCI
Simultaneous confidence intervals for multinomial proportions according to the method by Sison and Glaz
multinomRob
Robust Estimation of Overdispersed Multinomial Regression Models
MultiOrd
Generation of Multivariate Ordinal Variates
multipanelfigure
Infrastructure to Assemble Multi-Panel Figures (from Grobs)
MultiPhen
A Package to Test for Pleiotropic Effects
multiPIM
Variable Importance Analysis with Population Intervention Models
multipleNCC
Weighted Cox-Regression for Nested Case-Control Data
multiplex
Algebraic Tools for the Analysis of Multiple Social Networks
multiplier
Multiplier Analysis for SAM and FSAM
multiplyr
Data Manipulation with Parallelism and Shared Memory Matrices
multipol
multivariate polynomials
multirich
Calculate Multivariate Richness via UTC and sUTC
MultiRR
Bias, Precision, and Power for Multi-Level Random Regressions
multiscan
R package for combining multiple scans
multisensi
Multivariate Sensitivity Analysis
multisom
Clustering a Data Set using Multi-SOM Algorithm
multispatialCCM
Multispatial Convergent Cross Mapping
MultiSV
MultiSV: an R package for identification of structural variations in multiple populations based on whole genome resequencing
multitaper
Multitaper Spectral Analysis Tools
MultivariateRandomForest
Models Multivariate Cases Using Random Forests
multivator
A multivariate emulator
multiwave
Estimation of Multivariate Long-Memory Models Parameters
multiway
Component Models for Multi-Way Data
multiwayvcov
Multi-Way Standard Error Clustering
MultNonParam
Multivariate Nonparametric Methods
multtest
Resampling-based multiple hypothesis testing
multxpert
Common Multiple Testing Procedures and Gatekeeping Procedures
multxpert
Common Multiple Testing Procedures and Gatekeeping Procedures
muma
Metabolomics Univariate and Multivariate Analysis
MuMIn
Multi-Model Inference
MuMIn
Multi-Model Inference
munfold
Metric Unfolding
munfold
Metric Unfolding
munsell
Utilities for Using Munsell Colours
munsellinterpol
Interpolate Munsell Renotation Data from Hue/Chroma to CIE/sRGB
munsellinterpol
Interpolate Munsell Renotation Data from Hue/Chroma to CIE/sRGB
muRL
Mailmerge using R, LaTeX, and the Web
murphydiagram
Murphy Diagrams for Forecast Comparisons
muscle
Multiple Sequence Alignment with MUSCLE
musica
Multiscale Climate Model Assessment
musicNMR
Conversion of Nuclear Magnetic Resonance spectrum in audio file
muStat
Prentice Rank Sum Test and McNemar Test
MutationalPatterns
Studying patterns in base substitution catalogues
mutils
Basic Utilities for Data Management, Graphics, and Simulation
mutoss
Unified Multiple Testing Procedures
mutoss
Unified multiple testing procedures
mutossGUI
A Graphical User Interface for the MuToss Project
MuViCP
MultiClass Visualizable Classification using Combination of Projections
MVA
An Introduction to Applied Multivariate Analysis with R
mvabund
Statistical Methods for Analysing Multivariate Abundance Data
mvabund
Statistical Methods for Analysing Multivariate Abundance Data
MVar.pt
Analise multivariada (brazilian portuguese)
MVB
Mutivariate Bernoulli log-linear model
MvBinary
Modelling Multivariate Binary Data with Blocks of Specific One-Factor Distribution
MvBinary
Modelling Multivariate Binary Data with Blocks of Specific One-Factor Distribution
mvbutils
Workspace organization, code and documentation editing, package prep and editing, etc.
mvc
Multi-View Clustering
MVCClass
Model-View-Controller (MVC) Classes
mvcluster
Multi-View Clustering
mvctm
Multivariate Variance Components Tests for Multilevel Data
mvcwt
Wavelet analysis of multiple time series
mvdalab
Multivariate Data Analysis Laboratory
mvglmmRank
Multivariate Generalized Linear Mixed Models for Ranking Sports Teams
mvGST
Multivariate and directional gene set testing
mvinfluence
Influence Measures and Diagnostic Plots for Multivariate Linear Models
mvinfluence
Influence Measures and Diagnostic Plots for Multivariate Linear Models
MVLM
Multivariate Linear Model with Analytic p-Values
mvmesh
Multivariate Meshes and Histograms in Arbitrary Dimensions
mvmeta
Multivariate and Univariate Meta-Analysis and Meta-Regression
mvMORPH
Multivariate Comparative Tools for Fitting Evolutionary Models to Morphometric Data
MVN
Multivariate Normality Tests
mvna
Nelson-Aalen estimator of the cumulative hazard in multistate models
mvnfast
Fast Multivariate Normal and Student's t Methods
mvngGrAd
Moving Grid Adjustment in Plant Breeding Field Trials
mvnmle
ML estimation for multivariate normal data with missing values.
mvnormtest
Normality test for multivariate variables
mvnpermute
Generate New Multivariate Normal Samples from Permutations
mvnTest
Goodness of Fit Tests for Multivariate Normality
mvoutlier
Multivariate outlier detection based on robust methods
mvPot
Multivariate Peaks-over-Threshold Modelling for Spatial Extreme Events
mvProbit
Multivariate Probit Models
mvProbit
Multivariate Probit Models
mvprpb
Orthant Probability of the Multivariate Normal Distribution
mvQuad
Methods for Multivariate Quadrature
MVR
Mean-Variance Regularization
mvrtn
Mean and Variance of Truncated Normal Distribution
mvsf
Shapiro-Francia Multivariate Normality Test
mvShapiroTest
Generalized Shapiro-Wilk test for multivariate normality
mvSLOUCH
Multivariate Stochastic Linear Ornstein-Uhlenbeck Models for Phylogenetic Comparative Hypotheses
mvst
Bayesian Inference for the Multivariate Skew-t Model
MVT
Estimation and Testing for the Multivariate t-Distribution
mvtboost
Tree Boosting for Multivariate Outcomes
mvtmeta
Multivariate meta-analysis
mvtnorm
Multivariate Normal and t Distributions
mvtnorm
Multivariate Normal and t Distributions
mvtsplot
Multivariate Time Series Plot
mwa
Causal Inference in Spatiotemporal Event Data
mwaved
Multichannel Wavelet Deconvolution with Additive Long Memory Noise
MWLasso
Penalized Moving-Window Lasso Method for Genome-Wide Association Studies
mxkssd
Efficient mixed-level k-circulant supersaturated designs
MXM
Discovering Multiple, Statistically-Equivalent Signatures
mycobacrvR
Integrative immunoinformatics for Mycobacterial diseases in R platform
mycor
Automatic Correlation and Regression Test in a Data Frame
myepisodes
MyEpisodes RSS/API functions
myFuncs
Colins Usefull functions
mygene
Access MyGene.Info_ services
myplotrix
Various plotting functions
Myrrix
Interface to Myrrix. Myrrix is a complete, real-time, scalable clustering and recommender system, evolved from Apache Mahout.
Myrrixjars
External jars required for package Myrrix.
myTAI
Perform Evolutionary Transcriptomics Studies
myvariant
Accesses MyVariant.info variant query and annotation services
mzID
An mzIdentML parser for R
mzmatch.Data
Orbitrap Mass Spectrometry raw data example files
mzmatch.R
mzmatch and PeakML integration for XCMS.
mzR
parser for netCDF, mzXML, mzData and mzML and mzIdentML files (mass spectrometry data)
mztwinreg
Regression Models for Monozygotic Twin Data
nabor
Wraps 'libnabo', a Fast K Nearest Neighbour Library for Low Dimensions
nacopula
Nested Archimedean Copulas
nacopulaNew
Nested Archimedean Copulas
NADA
Nondetects And Data Analysis for environmental data
nadiv
Functions to construct non-additive genetic relatedness matrices
nadiv
(Non)Additive Genetic Relatedness Matrices
NAEPprimer
The NAEP Primer
NAM
Nested Association Mapping
NameNeedle
NameNeedle package
namespace
Provide namespace managment functions not (yet) present in base R
namespace
Provide namespace managment functions not (yet) present in base R
nanop
Tools for Nanoparticle Simulation and Calculation of PDF and Total Scattering Structure Function
NanoStringDiff
Differential Expression Analysis of NanoString nCounter Data
NanoStringNorm
Normalize NanoString miRNA and mRNA Data
NanoStringQCPro
Quality metrics and data processing methods for NanoString mRNA gene expression data
NAPPA
Performs the Processing and Normalisation of Nanostring miRNA and mRNA Data
naptime
A Flexible and Robust Sys.sleep() Replacement
narray
R Package for Handling Arrays in a Consistent Manner
NarrowPeaks
Shape-based Analysis of Variation in ChIP-seq using Functional PCA
nasadata
Interface to Various NASA API's
nasaweather
Collection of datasets from the ASA 2006 data expo
nat
NeuroAnatomy Toolbox for Analysis of 3D Image Data
nat.nblast
NeuroAnatomy Toolbox ('nat') Extension for Assessing Neuron Similarity and Clustering
nat.templatebrains
NeuroAnatomy Toolbox ('nat') Extension for Handling Template Brains
naturalsort
Natural Ordering
nat.utils
File System Utility Functions for 'NeuroAnatomy Toolbox'
NB
Maximum Likelihood method in estimating effective population size from genetic data
nbc4va
Bayes Classifier for Verbal Autopsy Data
NbClust
Determining the Best Number of Clusters in a Data Set
nbconvertR
Vignette Engine Wrapping IPython Notebooks
NBDdirichlet
NBD-Dirichlet Model of Consumer Buying Behavior for Marketing Research
nbpMatching
Functions for Optimal Non-Bipartite Matching
nbpMatching
Functions for Optimal Non-Bipartite Matching
NBPSeq
Negative Binomial Models for RNA-Sequencing Data
NCA
Necessary Condition Analysis
nCal
Nonlinear Calibration
ncappc
NCA Calculation and Population PK Model Diagnosis
ncbit
retrieve and build NBCI taxonomic data
nccMLE
MLE for nested case cohort and case-cohort designs
ncdf4
Interface to Unidata netCDF (Version 4 or Earlier) Format Data Files
ncdf4.helpers
Helper functions for use with the ncdf4 package
ncdfFlow
ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.
ncdf.tools
Easier 'NetCDF' File Handling
ncdf.tools
Easier 'NetCDF' File Handling
nCDunnett
Noncentral Dunnett's Test Distribution
ncf
Spatial Nonparametric Covariance Functions
ncg
Computes the noncentral gamma function
NCIgraph
Pathways from the NCI Pathways Database
nclbayes
Functions, Demos and Examples of Bayesian Analysis and Basic MCMC
nclRadvanced
nclRadvanced
nclRcourses
Functions for R courses at Newcastle University
nclRefficient
nclRefficient
nclRggplot2
nclRggplot2
nclRintroduction
A nclRintroduction
nclRintroductionB
nclRintroductionB
nclRmodelling
nclRmodelling
nclRpackage
A package for the Newcastle University R courses.
nclRprogramming
nclRprogramming
nclRprogrammingB
nclRprogrammingB
NCmisc
Miscellaneous Functions for Creating Adaptive Functions and Scripts
ncvreg
Regularization Paths for SCAD and MCP Penalized Regression Models
ndjson
Wicked-Fast Streaming 'JSON' ('ndjson') Reader
ndl
Naive Discriminative Learning
ndtv
Network Dynamic Temporal Visualizations
ndvits
NDVI Time series extraction and analysis
nea
Network Enrichment Analysis
neaGUI
An R package to perform the network enrichment analysis (NEA).
neaGUI
A user friendly R package to perform the network enrichment analysis (NEA).
NEArender
Network Enrichment Analysis
nearfar
Near-Far Matching
neariso
Near-Isotonic Regression
neat
Efficient Network Enrichment Analysis Test
NeatMap
Non-clustered heatmap alternatives
needleman.wunsch
Needleman Wunsch computation
needs
Attaches and Installs Packages
needy
needy
NEff
Calculating Effective Sizes Based on Known Demographic Parameters of a Population
NegBinBetaBinreg
Negative Binomial and Beta Binomial Bayesian Regression Models
negenes
Estimating the Number of Essential Genes in a Genome
neldermead
R port of the Scilab neldermead module
nem
(Dynamic) Nested Effects Models and Deterministic Effects Propagation Networks to reconstruct phenotypic hierarchies
neotoma
Access to the Neotoma Paleoecological Database Through R
neotoma
A Package to access the Neotoma Paleoecological Database using an API.
nephro
Biostatistics utilities for nephrology
nephro
Biostatistics Utilities for Nephrology
NEpiC
Network Assisted Algorithm for Epigenetic Studies Using Mean and Variance Combined Signals
NestedCategBayesImpute
Modeling and Generating Synthetic Versions of Nested Categorical Data in the Presence of Impossible Combinations
NestedCohort
Survival Analysis for Cohorts with Missing Covariate Information
nestedRanksTest
Mann-Whitney-Wilcoxon Test for Nested Ranks
netassoc
Inference of Species Associations from Co-Occurrence Data
netbenchmark
Benchmarking of several gene network inference methods
netbenchmark
Benchmarking of several gene network inference methods
netbiov
A package for visualizing complex biological network
netClass
netClass: An R Package for Network-Based Biomarker Discovery
NetCluster
Clustering for networks