All R packages

Found 34821 packages. Showing results 3001 to 3050.

Fitting cell population growth models
Analysis of cell-based screens - revised version of cellHTS
Quality Control for Single-Cell RNA-seq Data
Predict genes expressed selectively in specific cell types
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.
Inference and visualisation of Single-Cell RNA-seq data as a hierarchical tree structure
An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates
Statistical analysis for the Colony Formation Assay
An R package for analysis of case-control studies in genetic epidemiology
CGHbase: Base functions and classes for arrayCGH data analysis.
Calling aberrations for array CGH tumor profiles.
Find chromosome regions showing common gains/losses
Normalization of array CGH data with imbalanced aberrations.
Dimension Reduction for Array CGH Data with Minimal Information Loss.
Analysis of DNA methylation data from CHARM microarrays
R interface to a subset of OpenBabel functionalities
Cheminformatics Toolkit for R
CHiCAGO: Capture Hi-C Analysis of Genomic Organization
A package for secondary analysis of fusion products
Visualization tools for gene fusions
Quantitative comparison of multiple ChIP-seq datasets
Gene Set Enrichment For ChIP-seq Peak Data
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges
Quality metrics for ChIPseq data
ChIPseeker for ChIP peak Annotation, Comparison, and Visualization
chipseq: A package for analyzing chipseq data
Identifying Protein Binding Sites in High-Throughput Sequencing Data
Simulation of ChIP-seq experiments
ChIPXpress: enhanced transcription factor target gene identification from ChIP-seq and ChIP-chip data using publicly available gene expression profiles
The snp.matrix and X.snp.matrix classes
chroGPS: visualizing the epigenome
chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion.
Heat map plotting by genome coordinate
Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data
CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis
Chromosome Instability Index
Visualization and management of the protein-protein interaction networks.
A framework for two-class classification problems, with applications to differential variability and differential distribution testing
This package classifies putative polyadenylation sites as true or false/internally oligodT primed
Cleavage of Polypeptide Sequences
A package for the clinical proteomic profiling data analysis
Gene Set Analysis Exploiting Pathway Topology
Infers clonal composition of a tumor
Clonality testing
High throughput analysis of T cell antigen receptor sequences
Classification by local similarity threshold
Tools for performing taxonomic assignment.
Clustering Comparison Package
Compare Clusterings for Single-Cell Sequencing
statistical analysis and visualization of functional profiles for genes and gene clusters

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