All R packages

Found 39502 packages. Showing results 3401 to 3450.

Bioconductor-mirror/CAGEr
Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
Bioconductor-mirror/CALIB
Calibration model for estimating absolute expression levels from microarray data
Bioconductor-mirror/canceR
A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC.
Bioconductor-mirror/cancerclass
Development and validation of diagnostic tests from high-dimensional molecular data
Bioconductor-mirror/CancerInSilico
An R interface for computational modeling of tumor progression
Bioconductor-mirror/CancerMutationAnalysis
Cancer mutation analysis
Bioconductor-mirror/CancerSubtypes
Cancer subtypes identification, validation and visualization based on multiple genomic data sets
Bioconductor-mirror/CAnD
Perform Chromosomal Ancestry Differences (CAnD) Analyses
Bioconductor-mirror/caOmicsV
Visualization of multi-dimentional cancer genomics data
Bioconductor-mirror/Cardinal
A mass spectrometry imaging toolbox for statistical analysis
Bioconductor-mirror/casper
Characterization of Alternative Splicing based on Paired-End Reads
Bioconductor-mirror/CATALYST
Cytometry dATa anALYSis Tools
Bioconductor-mirror/Category
Category Analysis
Bioconductor-mirror/categoryCompare
Meta-analysis of high-throughput experiments using feature annotations
Bioconductor-mirror/CausalR
Causal network analysis methods
Bioconductor-mirror/ccmap
Combination Connectivity Mapping
Bioconductor-mirror/CCPROMISE
PROMISE analysis with Canonical Correlation for Two Forms of High Dimensional Genetic Data
Bioconductor-mirror/ccrepe
ccrepe_and_nc.score
Bioconductor-mirror/cellbaseR
Querying annotation data from the high performance Cellbase web services
Bioconductor-mirror/cellGrowth
Fitting cell population growth models
Bioconductor-mirror/cellHTS
Analysis of cell-based screens
Bioconductor-mirror/cellHTS2
Analysis of cell-based screens - revised version of cellHTS
Bioconductor-mirror/cellity
Quality Control for Single-Cell RNA-seq Data
Bioconductor-mirror/CellMapper
Predict genes expressed selectively in specific cell types
Bioconductor-mirror/CellNOptR
Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data.
Bioconductor-mirror/cellTree
Inference and visualisation of Single-Cell RNA-seq data as a hierarchical tree structure
Bioconductor-mirror/CexoR
An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates
Bioconductor-mirror/CFAssay
Statistical analysis for the Colony Formation Assay
Bioconductor-mirror/CGEN
An R package for analysis of case-control studies in genetic epidemiology
Bioconductor-mirror/CGHbase
CGHbase: Base functions and classes for arrayCGH data analysis.
Bioconductor-mirror/CGHcall
Calling aberrations for array CGH tumor profiles.
Bioconductor-mirror/cghMCR
Find chromosome regions showing common gains/losses
Bioconductor-mirror/CGHnormaliter
Normalization of array CGH data with imbalanced aberrations.
Bioconductor-mirror/CGHregions
Dimension Reduction for Array CGH Data with Minimal Information Loss.
Bioconductor-mirror/ChAMP
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
Bioconductor-mirror/charm
Analysis of DNA methylation data from CHARM microarrays
Bioconductor-mirror/ChemmineOB
R interface to a subset of OpenBabel functionalities
Bioconductor-mirror/ChemmineR
Cheminformatics Toolkit for R
Bioconductor-mirror/Chicago
CHiCAGO: Capture Hi-C Analysis of Genomic Organization
Bioconductor-mirror/chimera
A package for secondary analysis of fusion products
Bioconductor-mirror/chimeraviz
Visualization tools for gene fusions
Bioconductor-mirror/ChIPComp
Quantitative comparison of multiple ChIP-seq datasets
Bioconductor-mirror/chipenrich
Gene Set Enrichment For ChIP-seq Peak Data
Bioconductor-mirror/ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges
Bioconductor-mirror/ChIPQC
Quality metrics for ChIPseq data
Bioconductor-mirror/ChIPseeker
ChIPseeker for ChIP peak Annotation, Comparison, and Visualization
Bioconductor-mirror/chipseq
chipseq: A package for analyzing chipseq data
Bioconductor-mirror/ChIPseqR
Identifying Protein Binding Sites in High-Throughput Sequencing Data
Bioconductor-mirror/ChIPsim
Simulation of ChIP-seq experiments
Bioconductor-mirror/ChIPXpress
ChIPXpress: enhanced transcription factor target gene identification from ChIP-seq and ChIP-chip data using publicly available gene expression profiles