All R packages

Found 39546 packages. Showing results 3451 to 3500.

Bioconductor-mirror/ChemmineR
Cheminformatics Toolkit for R
Bioconductor-mirror/Chicago
CHiCAGO: Capture Hi-C Analysis of Genomic Organization
Bioconductor-mirror/chimera
A package for secondary analysis of fusion products
Bioconductor-mirror/chimeraviz
Visualization tools for gene fusions
Bioconductor-mirror/ChIPComp
Quantitative comparison of multiple ChIP-seq datasets
Bioconductor-mirror/chipenrich
Gene Set Enrichment For ChIP-seq Peak Data
Bioconductor-mirror/ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges
Bioconductor-mirror/ChIPQC
Quality metrics for ChIPseq data
Bioconductor-mirror/ChIPseeker
ChIPseeker for ChIP peak Annotation, Comparison, and Visualization
Bioconductor-mirror/chipseq
chipseq: A package for analyzing chipseq data
Bioconductor-mirror/ChIPseqR
Identifying Protein Binding Sites in High-Throughput Sequencing Data
Bioconductor-mirror/ChIPsim
Simulation of ChIP-seq experiments
Bioconductor-mirror/ChIPXpress
ChIPXpress: enhanced transcription factor target gene identification from ChIP-seq and ChIP-chip data using publicly available gene expression profiles
Bioconductor-mirror/chopsticks
The snp.matrix and X.snp.matrix classes
Bioconductor-mirror/chroGPS
chroGPS: visualizing the epigenome
Bioconductor-mirror/chromDraw
chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion.
Bioconductor-mirror/ChromHeatMap
Heat map plotting by genome coordinate
Bioconductor-mirror/chromPlot
Global visualization tool of genomic data
Bioconductor-mirror/chromstaR
Combinatorial and Differential Chromatin State Analysis for ChIP-Seq Data
Bioconductor-mirror/CHRONOS
CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis
Bioconductor-mirror/CINdex
Chromosome Instability Index
Bioconductor-mirror/cisPath
Visualization and management of the protein-protein interaction networks.
Bioconductor-mirror/ClassifyR
A framework for two-class classification problems, with applications to differential variability and differential distribution testing
Bioconductor-mirror/cleanUpdTSeq
This package classifies putative polyadenylation sites as true or false/internally oligodT primed
Bioconductor-mirror/cleaver
Cleavage of Polypeptide Sequences
Bioconductor-mirror/clippda
A package for the clinical proteomic profiling data analysis
Bioconductor-mirror/clipper
Gene Set Analysis Exploiting Pathway Topology
Bioconductor-mirror/Clomial
Infers clonal composition of a tumor
Bioconductor-mirror/Clonality
Clonality testing
Bioconductor-mirror/clonotypeR
High throughput analysis of T cell antigen receptor sequences
Bioconductor-mirror/clst
Classification by local similarity threshold
Bioconductor-mirror/clstutils
Tools for performing taxonomic assignment.
Bioconductor-mirror/clustComp
Clustering Comparison Package
Bioconductor-mirror/clusterExperiment
Compare Clusterings for Single-Cell Sequencing
Bioconductor-mirror/clusterProfiler
statistical analysis and visualization of functional profiles for genes and gene clusters
Bioconductor-mirror/clusterSeq
Clustering of high-throughput sequencing data by identifying co-expression patterns
Bioconductor-mirror/ClusterSignificance
The ClusterSignificance package provides tools to assess if class clusters in dimensionality reduced data representations have a separation different from permuted data
Bioconductor-mirror/clusterStab
Compute cluster stability scores for microarray data
Bioconductor-mirror/CMA
Synthesis of microarray-based classification
Bioconductor-mirror/CNAnorm
A normalization method for Copy Number Aberration in cancer samples
Bioconductor-mirror/CNEr
CNE Detection and Visualization
Bioconductor-mirror/cn.farms
cn.FARMS - factor analysis for copy number estimation
Bioconductor-mirror/cn.mops
cn.mops - Mixture of Poissons for CNV detection in NGS data
Bioconductor-mirror/CNORdt
Add-on to CellNOptR: Discretized time treatments
Bioconductor-mirror/CNORfeeder
Integration of CellNOptR to add missing links
Bioconductor-mirror/CNORfuzzy
Addon to CellNOptR: Fuzzy Logic
Bioconductor-mirror/CNORode
ODE add-on to CellNOptR
Bioconductor-mirror/CNPBayes
Bayesian mixture models for copy number polymorphisms
Bioconductor-mirror/CNTools
Convert segment data into a region by sample matrix to allow for other high level computational analyses.
Bioconductor-mirror/cnvGSA
Gene Set Analysis of (Rare) Copy Number Variants