All R packages

Found 39706 packages. Showing results 3501 to 3550.

Bioconductor-mirror/clustComp
Clustering Comparison Package
Bioconductor-mirror/clusterExperiment
Compare Clusterings for Single-Cell Sequencing
Bioconductor-mirror/clusterProfiler
statistical analysis and visualization of functional profiles for genes and gene clusters
Bioconductor-mirror/clusterSeq
Clustering of high-throughput sequencing data by identifying co-expression patterns
Bioconductor-mirror/ClusterSignificance
The ClusterSignificance package provides tools to assess if class clusters in dimensionality reduced data representations have a separation different from permuted data
Bioconductor-mirror/clusterStab
Compute cluster stability scores for microarray data
Bioconductor-mirror/CMA
Synthesis of microarray-based classification
Bioconductor-mirror/CNAnorm
A normalization method for Copy Number Aberration in cancer samples
Bioconductor-mirror/CNEr
CNE Detection and Visualization
Bioconductor-mirror/cn.farms
cn.FARMS - factor analysis for copy number estimation
Bioconductor-mirror/cn.mops
cn.mops - Mixture of Poissons for CNV detection in NGS data
Bioconductor-mirror/CNORdt
Add-on to CellNOptR: Discretized time treatments
Bioconductor-mirror/CNORfeeder
Integration of CellNOptR to add missing links
Bioconductor-mirror/CNORfuzzy
Addon to CellNOptR: Fuzzy Logic
Bioconductor-mirror/CNORode
ODE add-on to CellNOptR
Bioconductor-mirror/CNPBayes
Bayesian mixture models for copy number polymorphisms
Bioconductor-mirror/CNTools
Convert segment data into a region by sample matrix to allow for other high level computational analyses.
Bioconductor-mirror/cnvGSA
Gene Set Analysis of (Rare) Copy Number Variants
Bioconductor-mirror/CNVPanelizer
Reliable CNV detection in targeted sequencing applications
Bioconductor-mirror/CNVrd2
CNVrd2: a read depth-based method to detect and genotype complex common copy number variants from next generation sequencing data.
Bioconductor-mirror/CNVtools
A package to test genetic association with CNV data
Bioconductor-mirror/cobindR
Finding Co-occuring motifs of transcription factor binding sites
Bioconductor-mirror/CoCiteStats
Different test statistics based on co-citation.
Bioconductor-mirror/codelink
Manipulation of Codelink microarray data
Bioconductor-mirror/CODEX
A Normalization and Copy Number Variation Detection Method for Whole Exome Sequencing
Bioconductor-mirror/coexnet
coexnet: An R package to build CO-EXpression NETworks from Microarray Data
Bioconductor-mirror/CoGAPS
Coordinated Gene Activity in Pattern Sets
Bioconductor-mirror/cogena
co-expressed gene-set enrichment analysis
Bioconductor-mirror/coGPS
cancer outlier Gene Profile Sets
Bioconductor-mirror/COHCAP
CpG Island Analysis Pipeline for Illumina Methylation Array and Targeted BS-Seq Data
Bioconductor-mirror/coMET
coMET: visualisation of regional epigenome-wide association scan (EWAS) results and DNA co-methylation patterns
Bioconductor-mirror/COMPASS
Combinatorial Polyfunctionality Analysis of Single Cells
Bioconductor-mirror/compcodeR
RNAseq data simulation, differential expression analysis and performance comparison of differential expression methods
Bioconductor-mirror/compEpiTools
Tools for computational epigenomics
Bioconductor-mirror/CompGO
An R pipeline for .bed file annotation, comparing GO term enrichment between gene sets and data visualisation
Bioconductor-mirror/ComplexHeatmap
Making Complex Heatmaps
Bioconductor-mirror/CONFESS
Cell OrderiNg by FluorEScence Signal
Bioconductor-mirror/ConsensusClusterPlus
ConsensusClusterPlus
Bioconductor-mirror/consensusSeekeR
Detection of consensus regions inside a group of experiences using genomic positions and genomic ranges
Bioconductor-mirror/contiBAIT
Improves Early Build Genome Assemblies using Strand-Seq Data
Bioconductor-mirror/conumee
Enhanced copy-number variation analysis using Illumina DNA methylation arrays
Bioconductor-mirror/convert
Convert Microarray Data Objects
Bioconductor-mirror/copa
Functions to perform cancer outlier profile analysis.
Bioconductor-mirror/COPDSexualDimorphism
Sexual dimorphic and COPD differential analysis for gene expression and methylation.
Bioconductor-mirror/copynumber
Segmentation of single- and multi-track copy number data by penalized least squares regression.
Bioconductor-mirror/CopyNumber450k
R package for calling CNV from Illumina 450k methylation microarrays
Bioconductor-mirror/CopywriteR
Copy number information from targeted sequencing using off-target reads
Bioconductor-mirror/CoRegNet
CoRegNet : reconstruction and integrated analysis of co-regulatory networks
Bioconductor-mirror/Cormotif
Correlation Motif Fit
Bioconductor-mirror/CorMut
Detect the correlated mutations based on selection pressure