All R packages

Found 39625 packages. Showing results 3551 to 3600.

Bioconductor-mirror/crisprseekplus
crisprseekplus
Bioconductor-mirror/CrispRVariants
Tools for counting and visualising mutations in a target location
Bioconductor-mirror/crlmm
Genotype Calling (CRLMM) and Copy Number Analysis tool for Affymetrix SNP 5.0 and 6.0 and Illumina arrays
Bioconductor-mirror/crossmeta
Cross Platform Meta-Analysis of Microarray Data
Bioconductor-mirror/CSAR
Statistical tools for the analysis of ChIP-seq data
Bioconductor-mirror/csaw
ChIP-Seq Analysis with Windows
Bioconductor-mirror/CSSP
ChIP-Seq Statistical Power
Bioconductor-mirror/ctc
Cluster and Tree Conversion.
Bioconductor-mirror/ctsGE
Clustering of Time Series Gene Expression data
Bioconductor-mirror/cummeRbund
Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.
Bioconductor-mirror/customProDB
Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search
Bioconductor-mirror/CVE
Cancer Variant Explorer
Bioconductor-mirror/cycle
Significance of periodic expression pattern in time-series data
Bioconductor-mirror/cydar
Using Mass Cytometry for Differential Abundance Analyses
Bioconductor-mirror/cytofkit
cytofkit: an integrated mass cytometry data analysis pipeline
Bioconductor-mirror/CytoML
GatingML interface for openCyto
Bioconductor-mirror/dada2
Accurate, high-resolution sample inference from amplicon sequencing data
Bioconductor-mirror/dagLogo
dagLogo
Bioconductor-mirror/daMA
Efficient design and analysis of factorial two-colour microarray data
Bioconductor-mirror/DaMiRseq
Data Mining for RNA-seq data: normalization, feature selection and classification
Bioconductor-mirror/DAPAR
Tools for the Differential Analysis of Proteins Abundance with R
Bioconductor-mirror/DART
Denoising Algorithm based on Relevance network Topology
Bioconductor-mirror/DASiR
Distributed Annotation System in R
Bioconductor-mirror/DAVIDQuery
Retrieval from the DAVID bioinformatics data resource into R
Bioconductor-mirror/DBChIP
Differential Binding of Transcription Factor with ChIP-seq
Bioconductor-mirror/dcGSA
Distance-correlation based Gene Set Analysis for longitudinal gene expression profiles
Bioconductor-mirror/DChIPRep
DChIPRep - Analysis of chromatin modification ChIP-Seq data with replication
Bioconductor-mirror/ddCt
The ddCt Algorithm for the Analysis of Quantitative Real-Time PCR (qRT-PCR)
Bioconductor-mirror/ddgraph
Distinguish direct and indirect interactions with Graphical Modelling
Bioconductor-mirror/debrowser
debrowser: Interactive Differential Expresion Analysis Browser
Bioconductor-mirror/DECIPHER
Tools for curating, analyzing, and manipulating biological sequences
Bioconductor-mirror/DeconRNASeq
Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data
Bioconductor-mirror/DEDS
Differential Expression via Distance Summary for Microarray Data
Bioconductor-mirror/DeepBlueR
DeepBlueR
Bioconductor-mirror/deepSNV
Detection of subclonal SNVs in deep sequencing data.
Bioconductor-mirror/DEFormats
Differential gene expression data formats converter
Bioconductor-mirror/DEGraph
Two-sample tests on a graph
Bioconductor-mirror/DEGreport
Report of DEG analysis
Bioconductor-mirror/DEGseq
Identify Differentially Expressed Genes from RNA-seq data
Bioconductor-mirror/DelayedArray
Delayed operations on array-like objects
Bioconductor-mirror/deltaGseg
deltaGseg
Bioconductor-mirror/DeMAND
DeMAND
Bioconductor-mirror/derfinder
Annotation-agnostic differential expression analysis of RNA-seq data at base-pair resolution via the DER Finder approach
Bioconductor-mirror/derfinderHelper
derfinder helper package
Bioconductor-mirror/derfinderPlot
Plotting functions for derfinder
Bioconductor-mirror/DESeq
Differential gene expression analysis based on the negative binomial distribution
Bioconductor-mirror/DESeq2
Differential gene expression analysis based on the negative binomial distribution
Bioconductor-mirror/destiny
Creates diffusion maps
Bioconductor-mirror/DEsubs
DEsubs: an R package for flexible identification of differentially expressed subpathways using RNA-seq expression experiments
Bioconductor-mirror/DEXSeq
Inference of differential exon usage in RNA-Seq