All R packages

Found 35023 packages. Showing results 3701 to 3750.

Resampling-based multiple hypothesis testing
Multiple Sequence Alignment with MUSCLE
Studying patterns in base substitution catalogues
Model-View-Controller (MVC) Classes
Multivariate and directional gene set testing
MWASTools: an integrated pipeline to perform metabolome-wide association studies
Access MyGene.Info_ services
Accesses variant query and annotation services
An mzIdentML parser for R
parser for netCDF, mzXML, mzData and mzML and mzIdentML files (mass spectrometry data)
Call wide peaks for sequencing data
Differential Expression Analysis of NanoString nCounter Data
Quality metrics and data processing methods for NanoString mRNA gene expression data
Shape-based Analysis of Variation in ChIP-seq using Functional PCA
ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.
Pathways from the NCI Pathways Database
An R package to perform the network enrichment analysis (NEA).
(Dynamic) Nested Effects Models and Deterministic Effects Propagation Networks to reconstruct phenotypic hierarchies
Benchmarking of several gene network inference methods
A package for visualizing complex biological network
SRGnet An R package for studying synergistic response genes from transcriptomics data
A bioconductor package for high-dimensional exploration of biological network heterogeneity
NetPathMiner for Biological Network Construction, Path Mining and Visualization
A model for network-based prioritisation of genes
Functional Network Analysis
Network Seriation And Modularization
Regression-based network inference using Bayesian Model Averaging
NGScopy: Detection of Copy Number Variations in Next Generation Sequencing sequencing
Spatial and intensity based normalization of cDNA microarray data based on robust neural nets
Exploratory analysis and differential expression for RNA-seq data
Non-detects in qPCR data
Preprocessing of Illumina Infinium 450K data
Functions for normalisation of RT-qPCR data
Normalization and difference calling in ChIP-seq data
Permutation approximation methods for gene set enrichment analysis (non-permutation GSEA)
Predict gene network using an Ordinary Differential Equation (ODE) based method
Generate synthetic nucleosome maps
Normal Uniform Differential Gene Expression detection
An R package for nucleosome positioning prediction
Functions for Multinomial Occupancy Distribution
Operating characteristics plus sample size and local fdr for microarray experiments
Outlier detection in multiple sequence alignments
Outlier Gene Set Analysis
Preprocessing tools for oligonucleotide arrays
Classes for high-throughput arrays supported by oligo and crlmm
Optimized local intensity-dependent normalisation of two-color microarrays
Graphical user interface for OLIN
Multiple co-inertia analysis of omics datasets
High-quality circular visualization of omics data
Classification and Feature Selection for 'Omics' Datasets

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