All R packages

Found 39706 packages. Showing results 3851 to 3900.

Bioconductor-mirror/GOSim
Computation of functional similarities between GO terms and gene products; GO enrichment analysis
Bioconductor-mirror/goSTAG
A tool to use GO Subtrees to Tag and Annotate Genes within a set
Bioconductor-mirror/GOstats
Tools for manipulating GO and microarrays.
Bioconductor-mirror/GOsummaries
Word cloud summaries of GO enrichment analysis
Bioconductor-mirror/GOTHiC
Binomial test for Hi-C data analysis
Bioconductor-mirror/goTools
Functions for Gene Ontology database
Bioconductor-mirror/gpls
Classification using generalized partial least squares
Bioconductor-mirror/gprege
Gaussian Process Ranking and Estimation of Gene Expression time-series
Bioconductor-mirror/gQTLBase
gQTLBase: infrastructure for eQTL, mQTL and similar studies
Bioconductor-mirror/gQTLstats
gQTLstats: computationally efficient analysis for eQTL and allied studies
Bioconductor-mirror/graph
graph: A package to handle graph data structures
Bioconductor-mirror/GraphAlignment
GraphAlignment
Bioconductor-mirror/GraphAT
Graph Theoretic Association Tests
Bioconductor-mirror/graphite
GRAPH Interaction from pathway Topological Environment
Bioconductor-mirror/GraphPAC
Identification of Mutational Clusters in Proteins via a Graph Theoretical Approach.
Bioconductor-mirror/GRENITS
Gene Regulatory Network Inference Using Time Series
Bioconductor-mirror/GreyListChIP
Grey Lists -- Mask Artefact Regions Based on ChIP Inputs
Bioconductor-mirror/GRmetrics
Calculate growth-rate inhibition (GR) metrics
Bioconductor-mirror/groHMM
GRO-seq Analysis Pipeline
Bioconductor-mirror/GRridge
Better prediction by use of co-data: Adaptive group-regularized ridge regression
Bioconductor-mirror/GSALightning
Fast Permutation-based Gene Set Analysis
Bioconductor-mirror/GSAR
Gene Set Analysis in R
Bioconductor-mirror/GSCA
GSCA: Gene Set Context Analysis
Bioconductor-mirror/GSEABase
Gene set enrichment data structures and methods
Bioconductor-mirror/GSEAlm
Linear Model Toolset for Gene Set Enrichment Analysis
Bioconductor-mirror/GSReg
Gene Set Regulation (GS-Reg)
Bioconductor-mirror/GSRI
Gene Set Regulation Index
Bioconductor-mirror/GSVA
Gene Set Variation Analysis for microarray and RNA-seq data
Bioconductor-mirror/gtrellis
Genome Level Trellis Layout
Bioconductor-mirror/GUIDEseq
GUIDE-seq analysis pipeline
Bioconductor-mirror/Guitar
Guitar
Bioconductor-mirror/Gviz
Plotting data and annotation information along genomic coordinates
Bioconductor-mirror/gwascat
representing and modeling data in the EMBL-EBI GWAS catalog
Bioconductor-mirror/GWASTools
Tools for Genome Wide Association Studies
Bioconductor-mirror/h5vc
Managing alignment tallies using a hdf5 backend
Bioconductor-mirror/hapFabia
hapFabia: Identification of very short segments of identity by descent (IBD) characterized by rare variants in large sequencing data
Bioconductor-mirror/Harman
The removal of batch effects from datasets using a PCA and constrained optimisation based technique
Bioconductor-mirror/Harshlight
A "corrective make-up" program for microarray chips
Bioconductor-mirror/HCsnip
Semi-supervised adaptive-height snipping of the Hierarchical Clustering tree
Bioconductor-mirror/HDF5Array
HDF5 back end for DelayedArray objects
Bioconductor-mirror/HDTD
Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Transposable Data (HDTD)
Bioconductor-mirror/Heatplus
Heatmaps with row and/or column covariates and colored clusters
Bioconductor-mirror/HelloRanges
Introduce *Ranges to bedtools users
Bioconductor-mirror/HELP
Tools for HELP data analysis
Bioconductor-mirror/HEM
Heterogeneous error model for identification of differentially expressed genes under multiple conditions
Bioconductor-mirror/hiAnnotator
Functions for annotating GRanges objects
Bioconductor-mirror/HIBAG
HLA Genotype Imputation with Attribute Bagging
Bioconductor-mirror/hicrep
Measuring the reproducibility of Hi-C data
Bioconductor-mirror/hierGWAS
Asessing statistical significance in predictive GWA studies
Bioconductor-mirror/HilbertCurve
Making 2D Hilbert Curve