All R packages

Found 38377 packages. Showing results 3951 to 4000.

Bioconductor-mirror/mimager
mimager: The Microarray Imager
Bioconductor-mirror/MIMOSA
Mixture Models for Single-Cell Assays
Bioconductor-mirror/MineICA
Analysis of an ICA decomposition obtained on genomics data
Bioconductor-mirror/minet
Mutual Information NETworks
Bioconductor-mirror/minfi
Analyze Illumina Infinium DNA methylation arrays
Bioconductor-mirror/MinimumDistance
A Package for De Novo CNV Detection in Case-Parent Trios
Bioconductor-mirror/MiPP
Misclassification Penalized Posterior Classification
Bioconductor-mirror/MiRaGE
MiRNA Ranking by Gene Expression
Bioconductor-mirror/miRcomp
Tools to assess and compare miRNA expression estimatation methods
Bioconductor-mirror/mirIntegrator
Integrating microRNA expression into signaling pathways for pathway analysis
Bioconductor-mirror/miRLAB
Dry lab for exploring miRNA-mRNA relationships
Bioconductor-mirror/miRNAmeConverter
Convert miRNA Names to Different miRBase Versions
Bioconductor-mirror/miRNApath
miRNApath: Pathway Enrichment for miRNA Expression Data
Bioconductor-mirror/miRNAtap
miRNAtap: microRNA Targets - Aggregated Predictions
Bioconductor-mirror/Mirsynergy
Mirsynergy
Bioconductor-mirror/missMethyl
Analysing Illumina HumanMethylation BeadChip Data
Bioconductor-mirror/mitoODE
Implementation of the differential equation model described in "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"
Bioconductor-mirror/MLInterfaces
Uniform interfaces to R machine learning procedures for data in Bioconductor containers
Bioconductor-mirror/MLP
MLP
Bioconductor-mirror/MLSeq
Machine learning interface for RNA-Seq data
Bioconductor-mirror/MMDiff
Statistical Testing for ChIP-Seq data sets
Bioconductor-mirror/MMDiff2
Statistical Testing for ChIP-Seq data sets
Bioconductor-mirror/mmnet
A metagenomic pipeline for systems biology
Bioconductor-mirror/MmPalateMiRNA
Murine Palate miRNA Expression Analysis
Bioconductor-mirror/MODA
MODA: MOdule Differential Analysis for weighted gene co-expression network
Bioconductor-mirror/mogsa
Multiple omics data integrative clustering and gene set analysis
Bioconductor-mirror/monocle
Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq
Bioconductor-mirror/MoonlightR
Identify oncogenes and tumor suppressor genes from omics data
Bioconductor-mirror/MoPS
MoPS - Model-based Periodicity Screening
Bioconductor-mirror/mosaics
MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)
Bioconductor-mirror/motifbreakR
A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites
Bioconductor-mirror/MotifDb
An Annotated Collection of Protein-DNA Binding Sequence Motifs
Bioconductor-mirror/motifRG
A package for discriminative motif discovery, designed for high throughput sequencing dataset
Bioconductor-mirror/motifStack
Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
Bioconductor-mirror/MotIV
Motif Identification and Validation
Bioconductor-mirror/MPFE
Estimation of the amplicon methylation pattern distribution from bisulphite sequencing data
Bioconductor-mirror/mQTL.NMR
Metabolomic Quantitative Trait Locus Mapping for 1H NMR data
Bioconductor-mirror/msa
Multiple Sequence Alignment
Bioconductor-mirror/msgbsR
msgbsR: methylation sensitive genotyping by sequencing (MS-GBS) R functions
Bioconductor-mirror/MSGFgui
A shiny GUI for MSGFplus
Bioconductor-mirror/MSGFplus
An interface between R and MS-GF+
Bioconductor-mirror/msmsEDA
Exploratory Data Analysis of LC-MS/MS data by spectral counts
Bioconductor-mirror/msmsTests
LC-MS/MS Differential Expression Tests
Bioconductor-mirror/MSnbase
Base Functions and Classes for Mass Spectrometry and Proteomics
Bioconductor-mirror/MSnID
Utilities for Exploration and Assessment of Confidence of LC-MSn Proteomics Identifications
Bioconductor-mirror/msPurity
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
Bioconductor-mirror/MSstats
Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments
Bioconductor-mirror/mtbls2
MetaboLights MTBLS2: Comparative LC/MS-based profiling of silver nitrate-treated Arabidopsis thaliana leaves of wild-type and cyp79B2 cyp79B3 double knockout plants. Böttcher et al. (2004)
Bioconductor-mirror/Mulcom
Calculates Mulcom test
Bioconductor-mirror/MultiAssayExperiment
Software for the integration of multi-omics experiments in Bioconductor