All R packages

Found 39507 packages. Showing results 4101 to 4150.

Bioconductor-mirror/mQTL.NMR
Metabolomic Quantitative Trait Locus Mapping for 1H NMR data
Bioconductor-mirror/msa
Multiple Sequence Alignment
Bioconductor-mirror/msgbsR
msgbsR: methylation sensitive genotyping by sequencing (MS-GBS) R functions
Bioconductor-mirror/MSGFgui
A shiny GUI for MSGFplus
Bioconductor-mirror/MSGFplus
An interface between R and MS-GF+
Bioconductor-mirror/msmsEDA
Exploratory Data Analysis of LC-MS/MS data by spectral counts
Bioconductor-mirror/msmsTests
LC-MS/MS Differential Expression Tests
Bioconductor-mirror/MSnbase
Base Functions and Classes for Mass Spectrometry and Proteomics
Bioconductor-mirror/MSnID
Utilities for Exploration and Assessment of Confidence of LC-MSn Proteomics Identifications
Bioconductor-mirror/msPurity
Automated Evaluation of Precursor Ion Purity for Mass Spectrometry Based Fragmentation in Metabolomics
Bioconductor-mirror/MSstats
Protein Significance Analysis in DDA, SRM and DIA for Label-free or Label-based Proteomics Experiments
Bioconductor-mirror/mtbls2
MetaboLights MTBLS2: Comparative LC/MS-based profiling of silver nitrate-treated Arabidopsis thaliana leaves of wild-type and cyp79B2 cyp79B3 double knockout plants. Böttcher et al. (2004)
Bioconductor-mirror/Mulcom
Calculates Mulcom test
Bioconductor-mirror/MultiAssayExperiment
Software for the integration of multi-omics experiments in Bioconductor
Bioconductor-mirror/multiClust
multiClust: An R-package for Identifying Biologically Relevant Clusters in Cancer Transcriptome Profiles
Bioconductor-mirror/MultiDataSet
Implementation of the BRGE's (Bioinformatic Research Group in Epidemiology from Center for Research in Environmental Epidemiology) MultiDataSet and MethylationSet
Bioconductor-mirror/MultiMed
Testing multiple biological mediators simultaneously
Bioconductor-mirror/multiOmicsViz
Plot the effect of one omics data on other omics data along the chromosome
Bioconductor-mirror/multiscan
R package for combining multiple scans
Bioconductor-mirror/multtest
Resampling-based multiple hypothesis testing
Bioconductor-mirror/muscle
Multiple Sequence Alignment with MUSCLE
Bioconductor-mirror/MutationalPatterns
Studying patterns in base substitution catalogues
Bioconductor-mirror/MVCClass
Model-View-Controller (MVC) Classes
Bioconductor-mirror/mvGST
Multivariate and directional gene set testing
Bioconductor-mirror/MWASTools
MWASTools: an integrated pipeline to perform metabolome-wide association studies
Bioconductor-mirror/mygene
Access MyGene.Info_ services
Bioconductor-mirror/myvariant
Accesses MyVariant.info variant query and annotation services
Bioconductor-mirror/mzID
An mzIdentML parser for R
Bioconductor-mirror/mzR
parser for netCDF, mzXML, mzData and mzML and mzIdentML files (mass spectrometry data)
Bioconductor-mirror/NADfinder
Call wide peaks for sequencing data
Bioconductor-mirror/NanoStringDiff
Differential Expression Analysis of NanoString nCounter Data
Bioconductor-mirror/NanoStringQCPro
Quality metrics and data processing methods for NanoString mRNA gene expression data
Bioconductor-mirror/NarrowPeaks
Shape-based Analysis of Variation in ChIP-seq using Functional PCA
Bioconductor-mirror/ncdfFlow
ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.
Bioconductor-mirror/NCIgraph
Pathways from the NCI Pathways Database
Bioconductor-mirror/ndexr
NDEx R client library
Bioconductor-mirror/neaGUI
An R package to perform the network enrichment analysis (NEA).
Bioconductor-mirror/nem
(Dynamic) Nested Effects Models and Deterministic Effects Propagation Networks to reconstruct phenotypic hierarchies
Bioconductor-mirror/netbenchmark
Benchmarking of several gene network inference methods
Bioconductor-mirror/netbiov
A package for visualizing complex biological network
Bioconductor-mirror/NetCRG
SRGnet An R package for studying synergistic response genes from transcriptomics data
Bioconductor-mirror/nethet
A bioconductor package for high-dimensional exploration of biological network heterogeneity
Bioconductor-mirror/NetPathMiner
NetPathMiner for Biological Network Construction, Path Mining and Visualization
Bioconductor-mirror/netprioR
A model for network-based prioritisation of genes
Bioconductor-mirror/netresponse
Functional Network Analysis
Bioconductor-mirror/NetSAM
Network Seriation And Modularization
Bioconductor-mirror/networkBMA
Regression-based network inference using Bayesian Model Averaging
Bioconductor-mirror/NGScopy
NGScopy: Detection of Copy Number Variations in Next Generation Sequencing sequencing
Bioconductor-mirror/nnNorm
Spatial and intensity based normalization of cDNA microarray data based on robust neural nets
Bioconductor-mirror/NOISeq
Exploratory analysis and differential expression for RNA-seq data