All R packages

Found 39503 packages. Showing results 4201 to 4250.

Bioconductor-mirror/pathRender
Render molecular pathways
Bioconductor-mirror/pathVar
Methods to Find Pathways with Significantly Different Variability
Bioconductor-mirror/pathview
a tool set for pathway based data integration and visualization
Bioconductor-mirror/paxtoolsr
PaxtoolsR: Access Pathways from Multiple Databases through BioPAX and Pathway Commons
Bioconductor-mirror/Pbase
Manipulating and exploring protein and proteomics data
Bioconductor-mirror/pbcmc
Permutation-Based Confidence for Molecular Classification
Bioconductor-mirror/pcaExplorer
Interactive Visualization of RNA-seq Data Using a Principal Components Approach
Bioconductor-mirror/pcaGoPromoter
pcaGoPromoter is used to analyze DNA micro array data
Bioconductor-mirror/pcaMethods
A collection of PCA methods
Bioconductor-mirror/PCAN
Phenotype Consensus ANalysis (PCAN)
Bioconductor-mirror/pcot2
Principal Coordinates and Hotelling's T-Square method
Bioconductor-mirror/PCpheno
Phenotypes and cellular organizational units
Bioconductor-mirror/pdInfoBuilder
Platform Design Information Package Builder
Bioconductor-mirror/pdmclass
Classification of Microarray Samples using Penalized Discriminant Methods
Bioconductor-mirror/PECA
Probe-level Expression Change Averaging
Bioconductor-mirror/pepStat
Statistical analysis of peptide microarrays
Bioconductor-mirror/pepXMLTab
Parsing pepXML files and filter based on peptide FDR.
Bioconductor-mirror/PGA
An package for identification of novel peptides by customized database derived from RNA-Seq
Bioconductor-mirror/pgca
PGCA: An Algorithm to Link Protein Groups Created from MS/MS Data
Bioconductor-mirror/PGSEA
Parametric Gene Set Enrichment Analysis
Bioconductor-mirror/PharmacoGx
Analysis of Large-Scale Pharmacogenomic Data
Bioconductor-mirror/phenoDist
Phenotypic distance measures
Bioconductor-mirror/phenoTest
Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.
Bioconductor-mirror/PhenStat
Statistical analysis of phenotypic data
Bioconductor-mirror/philr
Phylogenetic partitioning based ILR transform for metagenomics data
Bioconductor-mirror/phosphonormalizer
Compensates for the bias introduced by median normalization in phosphoproteomics
Bioconductor-mirror/phyloseq
Handling and analysis of high-throughput microbiome census data
Bioconductor-mirror/Pi
Leveraging Genetic Evidence to Prioritise Drug Targets at the Gene, Pathway and Network Level
Bioconductor-mirror/piano
Platform for integrative analysis of omics data
Bioconductor-mirror/pickgene
Adaptive Gene Picking for Microarray Expression Data Analysis
Bioconductor-mirror/PICS
Probabilistic inference of ChIP-seq
Bioconductor-mirror/Pigengene
Infers biological signatures from gene expression data
Bioconductor-mirror/PING
Probabilistic inference for Nucleosome Positioning with MNase-based or Sonicated Short-read Data
Bioconductor-mirror/pint
Pairwise INTegration of functional genomics data
Bioconductor-mirror/pkgDepTools
Package Dependency Tools
Bioconductor-mirror/plateCore
Statistical tools and data structures for plate-based flow cytometry
Bioconductor-mirror/plethy
R framework for exploration and analysis of respirometry data
Bioconductor-mirror/plgem
Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM)
Bioconductor-mirror/plier
Implements the Affymetrix PLIER algorithm
Bioconductor-mirror/PLPE
Local Pooled Error Test for Differential Expression with Paired High-throughput Data
Bioconductor-mirror/plrs
Piecewise Linear Regression Splines (PLRS) for the association between DNA copy number and gene expression
Bioconductor-mirror/plw
Probe level Locally moderated Weighted t-tests.
Bioconductor-mirror/pmm
Parallel Mixed Model
Bioconductor-mirror/podkat
Position-Dependent Kernel Association Test
Bioconductor-mirror/polyester
Simulate RNA-seq reads
Bioconductor-mirror/Polyfit
Add-on to DESeq to improve p-values and q-values
Bioconductor-mirror/POST
Projection onto Orthogonal Space Testing for High Dimensional Data
Bioconductor-mirror/PPInfer
Inferring functionally related proteins using protein interaction networks
Bioconductor-mirror/ppiStats
Protein-Protein Interaction Statistical Package
Bioconductor-mirror/pqsfinder
Identification of potential quadruplex forming sequences