All R packages

Found 39706 packages. Showing results 4251 to 4300.

Bioconductor-mirror/PGSEA
Parametric Gene Set Enrichment Analysis
Bioconductor-mirror/PharmacoGx
Analysis of Large-Scale Pharmacogenomic Data
Bioconductor-mirror/phenoDist
Phenotypic distance measures
Bioconductor-mirror/phenoTest
Tools to test association between gene expression and phenotype in a way that is efficient, structured, fast and scalable. We also provide tools to do GSEA (Gene set enrichment analysis) and copy number variation.
Bioconductor-mirror/PhenStat
Statistical analysis of phenotypic data
Bioconductor-mirror/philr
Phylogenetic partitioning based ILR transform for metagenomics data
Bioconductor-mirror/phosphonormalizer
Compensates for the bias introduced by median normalization in phosphoproteomics
Bioconductor-mirror/phyloseq
Handling and analysis of high-throughput microbiome census data
Bioconductor-mirror/Pi
Leveraging Genetic Evidence to Prioritise Drug Targets at the Gene, Pathway and Network Level
Bioconductor-mirror/piano
Platform for integrative analysis of omics data
Bioconductor-mirror/pickgene
Adaptive Gene Picking for Microarray Expression Data Analysis
Bioconductor-mirror/PICS
Probabilistic inference of ChIP-seq
Bioconductor-mirror/Pigengene
Infers biological signatures from gene expression data
Bioconductor-mirror/PING
Probabilistic inference for Nucleosome Positioning with MNase-based or Sonicated Short-read Data
Bioconductor-mirror/pint
Pairwise INTegration of functional genomics data
Bioconductor-mirror/pkgDepTools
Package Dependency Tools
Bioconductor-mirror/plateCore
Statistical tools and data structures for plate-based flow cytometry
Bioconductor-mirror/plethy
R framework for exploration and analysis of respirometry data
Bioconductor-mirror/plgem
Detect differential expression in microarray and proteomics datasets with the Power Law Global Error Model (PLGEM)
Bioconductor-mirror/plier
Implements the Affymetrix PLIER algorithm
Bioconductor-mirror/PLPE
Local Pooled Error Test for Differential Expression with Paired High-throughput Data
Bioconductor-mirror/plrs
Piecewise Linear Regression Splines (PLRS) for the association between DNA copy number and gene expression
Bioconductor-mirror/plw
Probe level Locally moderated Weighted t-tests.
Bioconductor-mirror/pmm
Parallel Mixed Model
Bioconductor-mirror/podkat
Position-Dependent Kernel Association Test
Bioconductor-mirror/polyester
Simulate RNA-seq reads
Bioconductor-mirror/Polyfit
Add-on to DESeq to improve p-values and q-values
Bioconductor-mirror/POST
Projection onto Orthogonal Space Testing for High Dimensional Data
Bioconductor-mirror/PPInfer
Inferring functionally related proteins using protein interaction networks
Bioconductor-mirror/ppiStats
Protein-Protein Interaction Statistical Package
Bioconductor-mirror/pqsfinder
Identification of potential quadruplex forming sequences
Bioconductor-mirror/prada
Data analysis for cell-based functional assays
Bioconductor-mirror/prebs
Probe region expression estimation for RNA-seq data for improved microarray comparability
Bioconductor-mirror/PREDA
Position Related Data Analysis
Bioconductor-mirror/predictionet
Inference for predictive networks designed for (but not limited to) genomic data
Bioconductor-mirror/preprocessCore
A collection of pre-processing functions
Bioconductor-mirror/Prize
Prize: an R package for prioritization estimation based on analytic hierarchy process
Bioconductor-mirror/proBAMr
Generating SAM file for PSMs in shotgun proteomics data
Bioconductor-mirror/PROcess
Ciphergen SELDI-TOF Processing
Bioconductor-mirror/procoil
Prediction of Oligomerization of Coiled Coil Proteins
Bioconductor-mirror/ProCoNA
Protein co-expression network analysis (ProCoNA).
Bioconductor-mirror/proFIA
Preprocessing of FIA-HRMS data
Bioconductor-mirror/profileScoreDist
Profile score distributions
Bioconductor-mirror/pRoloc
A unifying bioinformatics framework for spatial proteomics
Bioconductor-mirror/pRolocGUI
Interactive visualisation of spatial proteomics data
Bioconductor-mirror/PROMISE
PRojection Onto the Most Interesting Statistical Evidence
Bioconductor-mirror/PROPER
PROspective Power Evaluation for RNAseq
Bioconductor-mirror/Prostar
Provides a GUI for DAPAR
Bioconductor-mirror/prot2D
Statistical Tools for volume data from 2D Gel Electrophoresis
Bioconductor-mirror/proteinProfiles
Protein Profiling