All R packages

Found 39503 packages. Showing results 4451 to 4500.

Bioconductor-mirror/seqbias
Estimation of per-position bias in high-throughput sequencing data
Bioconductor-mirror/seqCNA
Copy number analysis of high-throughput sequencing cancer data
Bioconductor-mirror/SeqGSEA
Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing
Bioconductor-mirror/seqLogo
Sequence logos for DNA sequence alignments
Bioconductor-mirror/seqPattern
Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences
Bioconductor-mirror/seqplots
An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps
Bioconductor-mirror/seqTools
Analysis of nucleotide, sequence and quality content on fastq files
Bioconductor-mirror/SeqVarTools
Tools for variant data
Bioconductor-mirror/sevenbridges
Seven Bridges Platform API Client and Common Workflow Language Tool Builder in R
Bioconductor-mirror/SGSeq
Splice event prediction and quantification from RNA-seq data
Bioconductor-mirror/shinyMethyl
Interactive visualization for Illumina methylation arrays
Bioconductor-mirror/shinyTANDEM
Provides a GUI for rTANDEM
Bioconductor-mirror/ShortRead
FASTQ input and manipulation
Bioconductor-mirror/SICtools
Find SNV/Indel differences between two bam files with near relationship
Bioconductor-mirror/sigaR
Statistics for Integrative Genomics Analyses in R
Bioconductor-mirror/SigCheck
Check a gene signature's prognostic performance against random signatures, known signatures, and permuted data/metadata
Bioconductor-mirror/SigFuge
SigFuge
Bioconductor-mirror/siggenes
Multiple testing using SAM and Efron's empirical Bayes approaches
Bioconductor-mirror/sights
Statistics and dIagnostic Graphs for HTS
Bioconductor-mirror/signeR
Empirical Bayesian approach to mutational signature discovery
Bioconductor-mirror/sigPathway
Pathway Analysis
Bioconductor-mirror/sigsquared
Gene signature generation for functionally validated signaling pathways
Bioconductor-mirror/SIM
Integrated Analysis on two human genomic datasets
Bioconductor-mirror/SIMAT
GC-SIM-MS data processing and alaysis tool
Bioconductor-mirror/SimBindProfiles
Similar Binding Profiles
Bioconductor-mirror/similaRpeak
Metrics to estimate a level of similarity between two ChIP-Seq profiles
Bioconductor-mirror/SIMLR
Title: SIMLR: Single-cell Interpretation via Multi-kernel LeaRning
Bioconductor-mirror/simpleaffy
Very simple high level analysis of Affymetrix data
Bioconductor-mirror/simulatorZ
Simulator for Collections of Independent Genomic Data Sets
Bioconductor-mirror/sincell
R package for the statistical assessment of cell state hierarchies from single-cell RNA-seq data
Bioconductor-mirror/SISPA
SISPA: Method for Sample Integrated Set Profile Analysis
Bioconductor-mirror/sizepower
Sample Size and Power Calculation in Micorarray Studies
Bioconductor-mirror/SJava
The Omegahat interface for R and Java
Bioconductor-mirror/skewr
Visualize Intensities Produced by Illumina's Human Methylation 450k BeadChip
Bioconductor-mirror/SLGI
Synthetic Lethal Genetic Interaction
Bioconductor-mirror/SLqPCR
Functions for analysis of real-time quantitative PCR data at SIRS-Lab GmbH
Bioconductor-mirror/SMAP
A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling
Bioconductor-mirror/SMITE
Significance-based Modules Integrating the Transcriptome and Epigenome
Bioconductor-mirror/SNAGEE
Signal-to-Noise applied to Gene Expression Experiments
Bioconductor-mirror/snapCGH
Segmentation, normalisation and processing of aCGH data.
Bioconductor-mirror/snm
Supervised Normalization of Microarrays
Bioconductor-mirror/SNPchip
Visualizations for copy number alterations
Bioconductor-mirror/SNPediaR
Query data from SNPedia
Bioconductor-mirror/SNPhood
SNPhood: Investigate, quantify and visualise the epigenomic neighbourhood of SNPs using NGS data
Bioconductor-mirror/SNPRelate
Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP Data
Bioconductor-mirror/snpStats
SnpMatrix and XSnpMatrix classes and methods
Bioconductor-mirror/soGGi
Visualise ChIP-seq, MNase-seq and motif occurrence as aggregate plots Summarised Over Grouped Genomic Intervals
Bioconductor-mirror/SomatiCA
SomatiCA: identifying, characterizing, and quantifying somatic copy number aberrations from cancer genome sequencing
Bioconductor-mirror/SomaticSignatures
Somatic Signatures
Bioconductor-mirror/SpacePAC
Identification of Mutational Clusters in 3D Protein Space via Simulation.