All R packages

Found 39458 packages. Showing results 4501 to 4550.

Bioconductor-mirror/SPEM
S-system parameter estimation method
Bioconductor-mirror/SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations
Bioconductor-mirror/SpidermiR
SpidermiR: An R/Bioconductor package for integrative network analysis with miRNA data
Bioconductor-mirror/spikeLI
Affymetrix Spike-in Langmuir Isotherm Data Analysis Tool
Bioconductor-mirror/spkTools
Methods for Spike-in Arrays
Bioconductor-mirror/splatter
Simple Simulation of Single-cell RNA Sequencing Data
Bioconductor-mirror/splicegear
splicegear
Bioconductor-mirror/spliceR
Classification of alternative splicing and prediction of coding potential from RNA-seq data.
Bioconductor-mirror/spliceSites
A bioconductor package for exploration of alignment gap positions from RNA-seq data
Bioconductor-mirror/SplicingGraphs
Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them
Bioconductor-mirror/splineTCDiffExpr
Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction
Bioconductor-mirror/splineTimeR
Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction
Bioconductor-mirror/SPLINTER
Splice Interpreter Of Transcripts
Bioconductor-mirror/splots
Visualization of high-throughput assays in microtitre plate or slide format
Bioconductor-mirror/spotSegmentation
Microarray Spot Segmentation and Gridding for Blocks of Microarray Spots
Bioconductor-mirror/SQUADD
Add-on of the SQUAD Software
Bioconductor-mirror/SRAdb
A compilation of metadata from NCBI SRA and tools
Bioconductor-mirror/sRAP
Simplified RNA-Seq Analysis Pipeline
Bioconductor-mirror/SRGnet
SRGnet: An R package for studying synergistic response to gene mutations from transcriptomics data from transcriptomics data
Bioconductor-mirror/sscore
S-Score Algorithm for Affymetrix Oligonucleotide Microarrays
Bioconductor-mirror/sscu
Strength of Selected Codon Usage
Bioconductor-mirror/sSeq
Shrinkage estimation of dispersion in Negative Binomial models for RNA-seq experiments with small sample size
Bioconductor-mirror/ssize
Estimate Microarray Sample Size
Bioconductor-mirror/SSPA
General Sample Size and Power Analysis for Microarray and Next-Generation Sequencing Data
Bioconductor-mirror/ssviz
A small RNA-seq visualizer and analysis toolkit
Bioconductor-mirror/STAN
The genomic STate ANnotation package
Bioconductor-mirror/staRank
Stability Ranking
Bioconductor-mirror/StarBioTrek
StarBioTrek
Bioconductor-mirror/Starr
Simple tiling array analysis of Affymetrix ChIP-chip data
Bioconductor-mirror/StarTrek
StarTrek
Bioconductor-mirror/STATegRa
Classes and methods for multi-omics data integration
Bioconductor-mirror/statTarget
Statistical Analysis of Metabolite Profile
Bioconductor-mirror/stepNorm
Stepwise normalization functions for cDNA microarrays
Bioconductor-mirror/stepwiseCM
Stepwise Classification of Cancer Samples using High-dimensional Data Sets
Bioconductor-mirror/Streamer
Enabling stream processing of large files
Bioconductor-mirror/STRINGdb
STRINGdb (Search Tool for the Retrieval of Interacting proteins database)
Bioconductor-mirror/STROMA4
Assign Properties to TNBC Patients
Bioconductor-mirror/subSeq
Subsampling of high-throughput sequencing count data
Bioconductor-mirror/SummarizedExperiment
SummarizedExperiment container
Bioconductor-mirror/supraHex
supraHex: a supra-hexagonal map for analysing tabular omics data
Bioconductor-mirror/survcomp
Performance Assessment and Comparison for Survival Analysis
Bioconductor-mirror/Sushi
Tools for visualizing genomics data
Bioconductor-mirror/sva
Surrogate Variable Analysis
Bioconductor-mirror/SVAPLSseq
SVAPLSseq-An R package to estimate the hidden factors of unwanted variability and adjust for them to enable a more powerful and accurate differential expression analysis based on RNAseq data
Bioconductor-mirror/SVM2CRM
SVM2CRM: support vector machine for cis-regulatory elements detections
Bioconductor-mirror/SWATH2stats
Transform and Filter SWATH Data for Statistical Packages
Bioconductor-mirror/SwathXtend
SWATH extended library generation and satistical data analysis
Bioconductor-mirror/swfdr
Science-wise false discovery rate and proportion of true null hypotheses estimation
Bioconductor-mirror/SwimR
SwimR: A Suite of Analytical Tools for Quantification of C. elegans Swimming Behavior
Bioconductor-mirror/switchBox
Utilities to train and validate classifiers based on pair switching using the K-Top-Scoring-Pair (KTSP) algorithm