All R packages

Found 39706 packages. Showing results 4601 to 4650.

Bioconductor-mirror/TFBSTools
Software Package for Transcription Factor Binding Site (TFBS) Analysis
Bioconductor-mirror/tigre
Transcription factor Inference through Gaussian process Reconstruction of Expression
Bioconductor-mirror/tilingArray
Transcript mapping with high-density oligonucleotide tiling arrays
Bioconductor-mirror/timecourse
Statistical Analysis for Developmental Microarray Time Course Data
Bioconductor-mirror/TimerQuant
Timer Quantification
Bioconductor-mirror/TIN
Transcriptome instability analysis
Bioconductor-mirror/TitanCNA
Subclonal copy number and LOH prediction from whole genome sequencing of tumours
Bioconductor-mirror/tkWidgets
R based tk widgets
Bioconductor-mirror/tofsims
Import, process and analysis of Time-of-Flight Secondary Ion Mass Spectrometry (ToF-SIMS) imaging data
Bioconductor-mirror/ToPASeq
Package for Topology-based Pathway Analysis of RNASeq data
Bioconductor-mirror/topGO
Enrichment Analysis for Gene Ontology
Bioconductor-mirror/TPP
Analyze thermal proteome profiling (TPP) experiments
Bioconductor-mirror/tracktables
Build IGV tracks and HTML reports
Bioconductor-mirror/trackViewer
A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot
Bioconductor-mirror/transcriptR
An Integrative Tool for ChIP- And RNA-Seq Based Primary Transcripts Detection and Quantification
Bioconductor-mirror/tRanslatome
Comparison between multiple levels of gene expression
Bioconductor-mirror/TransView
Read density map construction and accession. Visualization of ChIPSeq and RNASeq data sets
Bioconductor-mirror/traseR
GWAS trait-associated SNP enrichment analyses in genomic intervals
Bioconductor-mirror/treeio
Base Classes and Functions for Phylogenetic Tree Input and Output
Bioconductor-mirror/triform
Triform finds enriched regions (peaks) in transcription factor ChIP-sequencing data
Bioconductor-mirror/trigger
Transcriptional Regulatory Inference from Genetics of Gene ExpRession
Bioconductor-mirror/trio
Testing of SNPs and SNP Interactions in Case-Parent Trio Studies
Bioconductor-mirror/triplex
Search and visualize intramolecular triplex-forming sequences in DNA
Bioconductor-mirror/TRONCO
TRONCO, an R package for TRanslational ONCOlogy
Bioconductor-mirror/TSCAN
TSCAN: Tools for Single-Cell ANalysis
Bioconductor-mirror/tspair
Top Scoring Pairs for Microarray Classification
Bioconductor-mirror/TSRchitect
Promoter identification from large-scale TSS profiling data
Bioconductor-mirror/TSSi
Transcription Start Site Identification
Bioconductor-mirror/TurboNorm
A fast scatterplot smoother suitable for microarray normalization
Bioconductor-mirror/TVTB
TVTB: The VCF Tool Box
Bioconductor-mirror/tweeDEseq
RNA-seq data analysis using the Poisson-Tweedie family of distributions
Bioconductor-mirror/twilight
Estimation of local false discovery rate
Bioconductor-mirror/twoddpcr
Classify 2-d Droplet Digital PCR (ddPCR) data and quantify the number of starting molecules
Bioconductor-mirror/tximport
Import and summarize transcript-level estimates for transcript- and gene-level analysis
Bioconductor-mirror/TypeInfo
Optional Type Specification Prototype
Bioconductor-mirror/UNDO
Unsupervised Deconvolution of Tumor-Stromal Mixed Expressions
Bioconductor-mirror/unifiedWMWqPCR
Unified Wilcoxon-Mann Whitney Test for testing differential expression in qPCR data
Bioconductor-mirror/UniProt.ws
R Interface to UniProt Web Services
Bioconductor-mirror/Uniquorn
Identification of cancer cell lines based on their weighted mutational or variational fingerprint
Bioconductor-mirror/uSORT
uSORT: A self-refining ordering pipeline for gene selection
Bioconductor-mirror/VanillaICE
A Hidden Markov Model for high throughput genotyping arrays
Bioconductor-mirror/variancePartition
Quantify and interpret divers of variation in multilevel gene expression experiments
Bioconductor-mirror/VariantAnnotation
Annotation of Genetic Variants
Bioconductor-mirror/VariantFiltering
Filtering of coding and non-coding genetic variants
Bioconductor-mirror/VariantTools
Tools for Exploratory Analysis of Variant Calls
Bioconductor-mirror/vbmp
Variational Bayesian Multinomial Probit Regression
Bioconductor-mirror/Vega
An R package for copy number data segmentation
Bioconductor-mirror/VegaMC
VegaMC: A Package Implementing a Variational Piecewise Smooth Model for Identification of Driver Chromosomal Imbalances in Cancer
Bioconductor-mirror/viper
Virtual Inference of Protein-activity by Enriched Regulon analysis
Bioconductor-mirror/vsn
Variance stabilization and calibration for microarray data