API for CopyNumberPlots
Create Copy-Number Plots using karyoploteR functionality
| Global functions | |
|---|---|
| EnsemblStyle | Man page Source code |
| UCSCStyle | Man page Source code |
| Ztree2Hclust | Man page Source code |
| colByCopyNumber | Man page Source code |
| computeHclustPlotOrder | Man page Source code |
| getBAFColumn | Man page Source code |
| getChrColumn | Man page Source code |
| getColumn | Man page Source code |
| getCopyNumberColors | Man page Source code |
| getCopyNumberColumn | Man page Source code |
| getEndColumn | Man page Source code |
| getIDColumn | Man page Source code |
| getLOHColumn | Man page Source code |
| getLRRColumn | Man page Source code |
| getPosColumn | Man page Source code |
| getSegmentValueColumn | Man page Source code |
| getStartColumn | Man page Source code |
| loadCopyNumberCalls | Man page Source code |
| loadCopyNumberCallsCNVkit | Man page Source code |
| loadCopyNumberCallsCnmops | Man page Source code |
| loadCopyNumberCallsDECoN | Man page Source code |
| loadCopyNumberCallsDNAcopy | Man page Source code |
| loadCopyNumberCallsPanelcnmops | Man page Source code |
| loadCopyNumberCallsSeg | Man page Source code |
| loadCopyNumberCallspennCNV | Man page Source code |
| loadSNPData | Man page Source code |
| loadSNPDataDNAcopy | Man page Source code |
| loadSNPDataFromVCF | Man page Source code |
| plotBAF | Man page Source code |
| plotCopyNumberCalls | Man page Source code |
| plotCopyNumberCallsAsLines | Man page Source code |
| plotCopyNumberSummary | Man page Source code |
| plotLRR | Man page Source code |
| plotSingleCellCopyNumberCalls | Man page Source code |
| plotSingleCellCopyNumberSummary | Man page Source code |
| prepareLabels | Man page Source code |
| readHDF5Ztree | Man page Source code |
| removeNAs | Man page Source code |
| transformChr | Man page Source code |
