Man pages for DEqMS
a tool to perform statistical analysis of differential protein expression for quantitative proteomics data.
| equalMedianNormalization | normalize to have equal medians in all samples |
| farmsSummary | summarize peptide/PSM intensity into protein level relative... |
| medianSummary | summarize peptide/PSM intensity into protein level relative... |
| medianSweeping | summarize peptide/PSM intensity into protein level relative... |
| medpolishSummary | summarize peptide/PSM intensity into protein level relative... |
| outputResult | output the DEqMS analysis results in a data frame |
| peptideProfilePlot | plot log2 intensities of all peptides for one gene in... |
| Residualplot | plot the residuals against the number of quantified... |
| spectraCounteBayes | Peptide/Spectra Count Based Empirical Bayes Statistics for... |
| VarianceBoxplot | generate a boxplot of the variance |
| VarianceScatterplot | generate a scatter plot of the variance |
