| calc_stats | CALCULATE DESCRIPTIVE AND TEST STATISTICS |
| CL.methy | METHYLATION DATA OF 4 CELL LINES (CHR 7) |
| DMRforPairs | WRAPPER FOR THE DMRforPairs ANALSYSIS |
| DMRforPairs-package | DMRforPairs package |
| example_output_DMRforPairs | EXAMPLE OF DMRforPairs RESULTS |
| export_data | COMPLETE EXPORT AND VISUALIZATION OF DMRforPairs RESULTS |
| merge_classes | MERGE ILLUMINA PROBE CLASSES |
| plot_annotate_custom_region | PLOT METHYLATION OF A CUSTOM GENOMIC REGION |
| plot_annotate_gene | PLOT METHYLATION VALUES AROUND A GENE |
| plot_annotate_probes | PLOT METHYLATION+ANNOTATE A SET OF PROBES |
| plot_annotate_region | PLOT METHYLATION AND ANNOTATE REGION |
| regionfinder | IDENTIFICATION OF PROBE DENSE REGIONS |
| testregion | METHYLATION DIFFERENECE & TESTING FOR 1 REGIONID |
| tune_parameters | TUNE MIN_DISTANCE AND MIN_N PARAMETERS |
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