API for GSVA
Gene Set Variation Analysis for microarray and RNA-seq data
| Global functions | |
|---|---|
| .computeGeneSetsOverlap | Source code |
| .fastRndWalk | Source code |
| .filterFeatures | Source code |
| .gsva | Source code |
| .isPackageLoaded | Source code |
| .mapGeneSetsToFeatures | Source code |
| .rndWalk | Source code |
| combinez | Source code |
| compute.gene.density | Source code |
| compute.geneset.es | Source code |
| compute.gset.overlap.score | Source code |
| compute.null.enrichment | Source code |
| computeGeneSetsOverlap | Man page |
| computeGeneSetsOverlap,GeneSetCollection,ExpressionSet-method | Man page |
| computeGeneSetsOverlap,GeneSetCollection,character-method | Man page |
| computeGeneSetsOverlap,list,ExpressionSet-method | Man page |
| computeGeneSetsOverlap,list,character-method | Man page |
| filterGeneSets | Man page |
| filterGeneSets,GeneSetCollection-method | Man page |
| filterGeneSets,list-method | Man page |
| gsva | Man page |
| gsva,ExpressionSet,GeneSetCollection-method | Man page |
| gsva,ExpressionSet,list-method | Man page |
| gsva,SummarizedExperiment,GeneSetCollection-method | Man page |
| gsva,SummarizedExperiment,list-method | Man page |
| gsva,matrix,GeneSetCollection-method | Man page |
| gsva,matrix,list-method | Man page |
| igsva | Man page Source code |
| ks_test_Rcode | Source code |
| ks_test_m | Source code |
| load.gmt.data | Source code |
| plage | Source code |
| rightsingularsvdvectorgset | Source code |
| ssgsea | Source code |
| zscore | Source code |
