Files in GenomicFeatures
Conveniently import and query gene models
NEWS
README.md
NAMESPACE
.BBSoptions
DESCRIPTION
TODO
R/makeFeatureDbFromUCSC.R
R/TxDb-schema.R
R/nearest-methods.R
R/coverageByTranscript.R
R/makeTxDb.R
R/findCompatibleMarts.R
R/transcriptLengths.R
R/makeTxDbFromBiomart.R
R/makeTxDbFromEnsembl.R
R/Ensembl-utils.R
R/transcripts.R
R/exonicParts.R
R/extractTranscriptSeqs.R
R/getPromoterSeq-methods.R
R/mapIdsToRanges.R
R/features.R
R/FeatureDb-class.R
R/disjointExons.R
R/UCSC-utils.R
R/makeTxDbFromGRanges.R
R/transcriptsByOverlaps.R
R/TxDb-SELECT-helpers.R
R/extractUpstreamSeqs.R
R/transcriptsBy.R
R/id2name.R
R/select-methods.R
R/TxDb-class.R
R/makeTxDbFromUCSC.R
R/zzz.R
R/microRNAs.R
R/coordinate-mapping-methods.R
R/makeTxDbFromGFF.R
R/transcriptLocs2refLocs.R
R/makeTxDbPackage.R
R/utils.R
inst/CITATION
inst/doc/GenomicFeatures.Rnw
inst/doc/GenomicFeatures.pdf
inst/doc/GenomicFeatures.R
inst/txdb-template/NAMESPACE
inst/txdb-template/DESCRIPTION
inst/txdb-template/R/zzz.R
inst/txdb-template/man/package.Rd
inst/extdata/Biomart_Ensembl_sample.sqlite
inst/extdata/sample_ranges.rds
inst/extdata/cD.exByEdge-SG-Vig.Rda
inst/extdata/FeatureDb.sqlite
inst/extdata/cD.exsByGenes-SG-Vig.Rda
inst/extdata/hg19_knownGene_sample.sqlite
inst/extdata/sacCer2_sgdGene_txdb.sqlite
inst/extdata/events.Rda
inst/extdata/GTF_files/Aedes_aegypti.partial.sqlite
inst/extdata/GTF_files/test1.gtf
inst/extdata/GTF_files/Aedes_aegypti.partial.gtf
inst/extdata/GFF3_files/a.gff3
inst/extdata/GFF3_files/NC_011025.gff
inst/extdata/GFF3_files/TheCanonicalGene_v2.gff3
inst/extdata/GFF3_files/dmel-1000-r5.11.filtered.gff
inst/extdata/GFF3_files/a.sqlite
inst/extdata/GFF3_files/dmel-1000-r5.11.filtered.sqlite
inst/extdata/GFF3_files/TheCanonicalGene_v1.gff3
inst/unitTests/test_makeTxDbFromBiomart.R
inst/unitTests/test_transcripts.R
inst/unitTests/test_nearest-methods.R
inst/unitTests/test_makeTxDb.R
inst/unitTests/test_mapIdsToRanges.R
inst/unitTests/test_getPromoterSeq-methods.R
inst/unitTests/test_makeTxDbFromUCSC.R
inst/unitTests/test_coordinate-mapping-methods.R
inst/unitTests/test_makeTxDbFromGFF.R
inst/unitTests/test_disjointExons.R
inst/unitTests/test_TxDb_seqinfo.R
inst/unitTests/test_makeIdsForUniqueDataFrameRows.R
inst/unitTests/test_transcriptsBy.R
inst/unitTests/test_select-methods.R
inst/unitTests/test_transcriptsByOverlaps.R
inst/unitTests/test_makeTxDbFromGRanges.R
inst/script/makeTxDbs.R
inst/script/maketRNAFDb.R
build/vignette.rds
tests/run_unitTests.R
vignettes/GenomicFeatures.Rnw
man/extractTranscriptSeqs.Rd
man/transcriptLengths.Rd
man/transcriptsBy.Rd
man/makeTxDbFromGFF.Rd
man/TxDb-class.Rd
man/mapIdsToRanges.Rd
man/transcriptLocs2refLocs.Rd
man/select-methods.Rd
man/nearest-methods.Rd
man/getPromoterSeq-methods.Rd
man/FeatureDb-class.Rd
man/makeTxDbFromBiomart.Rd
man/extractUpstreamSeqs.Rd
man/features.Rd
man/coordinate-mapping-methods.Rd
man/microRNAs.Rd
man/coverageByTranscript.Rd
man/makeTxDb.Rd
man/id2name.Rd
man/transcriptsByOverlaps.Rd
man/makeFeatureDbFromUCSC.Rd
man/as-format-methods.Rd
man/exonicParts.Rd
man/makeTxDbFromUCSC.Rd
man/makeTxDbPackage.Rd
man/transcripts.Rd
man/makeTxDbFromGRanges.Rd
man/makeTxDbFromEnsembl.Rd
man/mapRangesToIds.Rd
man/disjointExons.Rd
