Man pages for IPO
Automated Optimization of XCMS Data Processing parameters
| attachList | Attaching one list at the end of another |
| calcPPS | Calculation of a peak picking score (PPS) by using natural,... |
| calculateXcmsSet | Calculation of an xcmsSet-Object |
| combineParams | Combining two lists of parameters together. |
| createModel | Creating a response surface model. |
| decode | En-/decodes values to/from ranges of -1 to 1. |
| findIsotopes.CAMERA | Identification of Isotopes using the package CAMERA. |
| findIsotopes.IPO | Identification of 13C isotopes |
| getBbdParameter | Creates a Box-Behnken Design of experiment |
| getCcdParameter | Creates a Central-Composite Design of experiment |
| getDefaultRetCorCenterSample | Gets the index of the sample with most peaks in it. |
| getDefaultRetGroupStartingParams | Gives a List of parameters for xcms-methods retcor.obiwarp or... |
| getDefaultXcmsSetStartingParams | Creates a List of parameters for xcms-methods... |
| getNormalizedResponse | It combines Retention time Correction Scores (RCS) and... |
| getRGTVValues | Calculation of values used for a Retention time correction... |
| IPO-package | Automated Optimization of Untargeted Metabolomics LC-MS Data... |
| optimizeRetGroup | Optimization for parameters for retention time correction and... |
| optimizeXcmsSet | Optimisation of peak picking parameters by using natural,... |
| toMatrix | Converts an array into a matrix |
| typeCastParams | Splits parameters into those which should be optimized and... |
| writeParamsTable | Writes XCMS settings to a file. |
| writeRScript | Prints an R-script to the screen which can be used for xcms... |
