| makeExample | Make an example NBAMSeqDataSet | 
| makeplot | Making plots to visualize nonlinear associations | 
| NBAMSeq | Differential expression analysis based on negative binomial... | 
| NBAMSeqDataSet | NBAMSeqDataSet constructor | 
| NBAMSeqDataSet-class | NBAMSeqDataSet class | 
| NBAMSeq-methods | Accessor functions and replace methods for NBAMSeqDataSet... | 
| results | Pulling out result | 
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